LOC122344626


Basic Information

Item Value
gene id LOC122344626
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5404612 ~ 5408298 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006250916.1
TACTCTCTGCGTTTACTCAGCAGACTGATCACAGTATTGTGTTCTTAGTCCAAGTTATCCAACTCGGCCTCAGTGTTCTAGAGCTTCATGAATAATGTAGACTTTTTTGCACAAGTTCGTCATAGTCAGTGACATTTTGATATCCTCCAAGAACCTGATAGAGCTTCACCAGCTTGTCACACAGGTCCTCTAATGATCCAGCTTTACCTACAGCTTGAGAAATGCAAGTTCCATCACTCCTTCGTTCAGTTCCTAGCTGTGGTCACCGTATTCTTCAAAACTTCCCCTTGAGTGTTTGAtcagtttggaatgacacaaggGCACCACAGACATCTAACGCCTTCTGAGAAGATCAATGAGAACATTAGAAAGATTCTGTTCAAAAAGATGAGCCTTCAAGAAAGTCACAGGAGTTTCCTCGGTCTGGCTGCAGAAGAATATGGTTTGATTGCTCTTTACATGAGAATTTGTATGTTTAGTGGATTAATGGAGTGATTAAATGCTATGATGTGCATACTGTAGGTTTGTAAATTGTGTACCTACACCGAATGTAtgattatattatgttattttatatgaaacGGTTAGTTCCATTCTTGgaatctgattggtcagcagctgtgttttattcacgaTACAGCACAGCTAGGACTGCTTCACCCAATGGTTTGTGTATCACTGGGCAACACCTTTAGCAACCACCATTAGAAACATAAACAATCAATAATACATCATTTAAATTGTtccatgtattatgtattttggcCCCTGCTGGCGTTATGCTGCATCTTTTATCTTTGATTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006250916.1 True 807 lncRNA 0.39 3 5404612 5408298

Neighbor

gene id symbol gene type direction distance location
erbb4a erbb4a,erbb4,LOC107674013,LOC107707608,LOC107725343,LOC107667809,LOC107557316,LOC108440448,LOC101079286 coding upstream 110172 5157979 ~ 5294440 (+)
ube2f ube2f,LOC107725407,LOC107556276,LOC107674019,LOC107707607,LOC107566887 coding upstream 248256 5149028 ~ 5156356 (+)
si:ch211-93g23.2 si:ch211-93g23.2,LOC107725372,LOC107674017,LOC107556277 coding upstream 255722 5145908 ~ 5148890 (+)
fastkd2 LOC107673994 coding upstream 437692 4960324 ~ 4966920 (+)
retreg2 fam134a,LOC107706836,LOC107676053,LOC107556270,LOC107750069,LOC107673992 coding upstream 449569 4945839 ~ 4955043 (+)
si:ch73-383l1.1 erbb4a,erbb4,LOC107705456,LOC108440448,LOC107674013,LOC107702505,LOC107707608,LOC107667809 coding downstream 31767 5440065 ~ 5562873 (+)
lancl1 lancl1,LOC107564761,LOC107702553,LOC107590692 coding downstream 185344 5593642 ~ 5600055 (+)
mylz3 mylz3,LOC107725378,LOC107564772,LOC107701775,LOC107702554,LOC107705457 coding downstream 195409 5603707 ~ 5607415 (+)
LOC122347193 pcnp,LOC107564735,LOC107590694,LOC107702552 coding downstream 200031 5608329 ~ 5610739 (+)
en1b eng1b,en1,LOC107705463,LOC107702516 coding downstream 260099 5668397 ~ 5672318 (+)
G1036 NA non-coding upstream 247631 5156722 ~ 5156981 (+)
LOC122346173 NA non-coding upstream 265758 5127490 ~ 5138854 (+)
G1016 NA non-coding upstream 303290 5038720 ~ 5101322 (+)
G948 NA non-coding upstream 426698 4977422 ~ 4977914 (+)
LOC122346140 NA non-coding upstream 485817 4896504 ~ 4918795 (+)
G1064 mxa,mx1,LOC107702551 non-coding downstream 184916 5593214 ~ 5626276 (+)
G1061 NA non-coding downstream 206089 5614387 ~ 5622881 (+)
G1060 NA non-coding downstream 207422 5615720 ~ 5623944 (+)
G1086 NA non-coding downstream 266074 5674372 ~ 5674683 (+)
G1091 NA non-coding downstream 329589 5737887 ~ 5789576 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other upstream 378698 4979125 ~ 5025914 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other upstream 427349 4967186 ~ 4977263 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other upstream 459771 4938181 ~ 4944841 (+)
G826 NA other upstream 1046316 4358007 ~ 4358296 (+)
G824 NA other upstream 1047352 4356698 ~ 4357260 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other downstream 471162 5879460 ~ 5881134 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other downstream 649106 6057404 ~ 6087655 (+)
G1318 NA other downstream 877560 6285858 ~ 6287198 (+)
G1414 NA other downstream 1125204 6533502 ~ 6536957 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other downstream 1303337 6711635 ~ 6845548 (+)

Expression


Co-expression Network