LOC122346147


Basic Information

Item Value
gene id LOC122346147
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4619246 ~ 4623921 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251101.1
CGCCTGCGGTGTTTGTGTAAATGCTTGTTTGCTTCTGATTCAGAGGGTCCCTCGCAACACTGCTGTACTGTAACTGGATATGGGGTGTGAGACGACTTCATACAGAGGAGTGCTTatgtgaaaaagaaagagttggatgaaaaaactaagcaaactgACATTTGTGGGCAATGAGGTTTTGTTCTGAGTCACCAGGAACGGTTTCCCTTTCTACTCAGTGACTTCCAGAATCACCCAGGCTAGACAAAATGTGCATCAGAAACACTGCATATTTTCCACTCGTGAAAAGAACACAAGGCATGATGGGTAAGCAGCATGCCCAGAATCGCTCCGCTCTCTTTCCACTTTATTCAACGTGGAGAATAAATCTTAAgctaagcaaataaaaaaacatcacagcacATGTGTTACGTGTGAGTTTTGAGAAGACAAaccttatcaaataaaaattactatCCATTAAGCaatatttaagttttacttTCTAAATTCTTCCTGATTTTGTCATGTCAGTTATTTTGATTAAAGGCcttgattttaaaattgtaaattatgtattaaaGCACACAGCACTGCACATGACCgtaaataaattgattattcatttaaaataatattatttttagatgcttcatatataaattctttaataacaattcaaaaaaacctttttatatat

Function

GO:

id name namespace
GO:0009063 cellular amino acid catabolic process biological_process
GO:0009078 pyruvate family amino acid metabolic process biological_process
GO:0009080 pyruvate family amino acid catabolic process biological_process
GO:1901605 alpha-amino acid metabolic process biological_process
GO:1901606 alpha-amino acid catabolic process biological_process
GO:0046395 carboxylic acid catabolic process biological_process
GO:0042851 L-alanine metabolic process biological_process
GO:0042853 L-alanine catabolic process biological_process
GO:0044282 small molecule catabolic process biological_process
GO:0042594 response to starvation biological_process
GO:0031667 response to nutrient levels biological_process
GO:0006522 alanine metabolic process biological_process
GO:0006524 alanine catabolic process biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0016054 organic acid catabolic process biological_process
GO:0005811 lipid droplet cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251101.1 True 679 lncRNA 0.35 3 4619246 4623921

Neighbor

gene id symbol gene type direction distance location
fn1b fn1b,LOC107749885,LOC107556289,LOC107674002,LOC107750053,LOC107676051,LOC107549419 coding downstream 619 4597080 ~ 4618627 (-)
mnx2b mnx2b,LOC107750883,LOC107674001,LOC107556279,LOC107676047 coding downstream 44826 4569834 ~ 4574420 (-)
ndfip2 ndfip2,LOC107676059,LOC107549434,LOC107750462,LOC107674006,LOC108411896 coding downstream 72780 4531789 ~ 4546466 (-)
LOC122353624 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 coding downstream 918001 3695165 ~ 3701245 (-)
cep97 NA coding downstream 1879657 2732846 ~ 2739589 (-)
nrp2a nrp2a,nrp2,LOC107556288,LOC107749808,LOC107750056,LOC107673990,LOC107676043 coding upstream 49768 4673689 ~ 4739460 (-)
pard3ba pard3ba,LOC107673991,LOC107750057,LOC107676058,LOC107749732,LOC107549438,LOC107556285 coding upstream 141378 4765299 ~ 4896900 (-)
klf7a klf7a,LOC107725403,LOC107752450,LOC107676060,LOC107674020,LOC107556267 coding upstream 414803 5038724 ~ 5075611 (-)
mxa mxa,LOC107725377,LOC107565622,LOC107702551 coding upstream 987987 5611908 ~ 5616115 (-)
LOC122342384 NA coding upstream 1001789 5625710 ~ 5629067 (-)
G889 LOC107750071,LOC107750290,LOC107674016,LOC107676064 non-coding downstream 61748 4556369 ~ 4557498 (-)
G888 tuba8l2,LOC107750365,LOC107556293 non-coding downstream 65974 4551569 ~ 4553272 (-)
G885 NA non-coding downstream 107861 4510794 ~ 4511385 (-)
G883 NA non-coding downstream 112687 4506278 ~ 4506559 (-)
G880 NA non-coding downstream 118458 4500557 ~ 4500788 (-)
G959 NA non-coding upstream 123569 4747490 ~ 4748885 (-)
LOC122346181 NA non-coding upstream 237080 4861001 ~ 4862965 (-)
G973 abcb6a,abcb6,LOC107750068,LOC107556273 non-coding upstream 305443 4929364 ~ 4930701 (-)
G978 NA non-coding upstream 311799 4935720 ~ 4937688 (-)
LOC122346132 NA non-coding upstream 521421 5145342 ~ 5146126 (-)
G820 NA other downstream 320053 4298310 ~ 4299193 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other downstream 604959 4007840 ~ 4014287 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other downstream 1334460 3136508 ~ 3284786 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other downstream 1929782 2688765 ~ 2689464 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 3014262 1592069 ~ 1604984 (-)
mdh1b mdh1b other upstream 332198 4956119 ~ 4960210 (-)
LOC122346875 LOC107725387,LOC107564644,LOC107701784,LOC107722954,LOC107702543,LOC101882918 other upstream 1220223 5844144 ~ 5853249 (-)
G1270 zgc:77849,LOC107722949,LOC107692663,LOC107564565,LOC107702534,LOC107590708 other upstream 1487542 6111463 ~ 6113523 (-)
socs1b socs1b,LOC107725357,LOC107692730,LOC107577529,LOC107590765,LOC107725364,LOC107565573,LOC107692731 other upstream 1596683 6220604 ~ 6226114 (-)
si:ch211-14k19.8 LOC107725402,LOC107692660,LOC107564509,LOC107722969,LOC107702529,LOC107590712 other upstream 1643742 6267663 ~ 6274751 (-)

Expression


Co-expression Network