LOC122346159 (LOC107557315,LOC107705456,LOC107725343,LOC107707608,LOC107674013,LOC107667809,LOC107556266)


Basic Information

Item Value
gene id LOC122346159
gene name LOC107557315,LOC107705456,LOC107725343,LOC107707608,LOC107674013,LOC107667809,LOC107556266
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4219242 ~ 4221288 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251103.1
CAACCTTCCAGCTCGAGCACAATCCCAACGCCAAATACACCTATGGAGCGTTCTGTGTCAAGAAATGCCCACATAACTTTGTGGTGGATCACAGCTCTTGTGTCAGAGCCTGTCCGAGCAACAAGATGGAGGTGGAGGAAAATCACATCAAGATGTGCATCCCATGCACTGACATCTGTCCGAAAGTGTGTGACGGTATAGGTACCGGCAGTCTTCAG

Function

NR:

description
PREDICTED: receptor tyrosine-protein kinase erbB-4-like, partial

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251103.1 True 218 lncRNA 0.50 3 4219242 4221288

Neighbor

gene id symbol gene type direction distance location
LOC122352357 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 coding upstream 207872 4007775 ~ 4011370 (+)
slitrk6 slitrk6,LOC107674010,LOC107558904,LOC107730399,LOC107574216,LOC107737039,LOC107698122 coding upstream 401246 3804599 ~ 3817996 (+)
LOC122350229 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC108414264,LOC100710496 coding upstream 1098422 2941770 ~ 3120820 (+)
LOC122328837 gpc6a,LOC107730398,LOC107744956,LOC107553997,LOC105911916,LOC103365236 coding upstream 1437058 2758083 ~ 2782184 (+)
LOC122353699 NA coding upstream 1477030 2742079 ~ 2742212 (+)
spry2 spry2,LOC107549433,LOC107750630,LOC107674014,LOC107676062,LOC107750049,LOC107556294 coding downstream 273906 4495194 ~ 4499239 (+)
tuba8l2 tuba8l2,LOC107750365,LOC107556293,LOC103042625,LOC108411703,LOC107549435 coding downstream 327164 4548452 ~ 4554686 (+)
stk16 stk16,LOC107674016,LOC107750290,LOC107676064 coding downstream 334217 4555505 ~ 4561710 (+)
atic atic,LOC107556291,LOC107750210,LOC107674004,LOC107549437,LOC107750055,LOC107676052 coding downstream 368743 4590031 ~ 4597077 (+)
LOC122346000 cpo,LOC107556274,LOC108440461,LOC108258336 coding downstream 423646 4644934 ~ 4649367 (+)
LOC122346127 erbb4,LOC107741926,LOC107660610,LOC107721020,LOC107662043,LOC107555909 non-coding upstream 642 4209409 ~ 4218600 (+)
LOC122341420 NA non-coding upstream 194904 4020097 ~ 4024338 (+)
G771 NA non-coding upstream 498703 3720264 ~ 3720539 (+)
G719 NA non-coding upstream 933040 3285949 ~ 3286202 (+)
G546 NA non-coding upstream 1488522 2726300 ~ 2730720 (+)
G815 NA non-coding downstream 72765 4294053 ~ 4299198 (+)
G856 NA non-coding downstream 280953 4502241 ~ 4502477 (+)
G857 NA non-coding downstream 282244 4503532 ~ 4503821 (+)
G852 NA non-coding downstream 319702 4540990 ~ 4542948 (+)
G843 NA non-coding downstream 354856 4576144 ~ 4599814 (+)
G749 LOC107730401,LOC107558902,LOC107677853,LOC107698126,LOC107561275,LOC107737038,LOC108411062 other upstream 520149 3636707 ~ 3699093 (+)
G727 NA other upstream 878366 3334658 ~ 3340876 (+)
G482 dusp27 other upstream 1622940 2594931 ~ 2596302 (+)
G474 f10,LOC107654567,LOC107694470,LOC107751061,LOC107747060 other upstream 1691998 2524525 ~ 2527244 (+)
pcid2 pcid2 other upstream 1700857 2511572 ~ 2518385 (+)
G824 NA other downstream 135410 4356698 ~ 4357260 (+)
G826 NA other downstream 136719 4358007 ~ 4358296 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other downstream 716893 4938181 ~ 4944841 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other downstream 745898 4967186 ~ 4977263 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other downstream 757837 4979125 ~ 5025914 (+)

Expression


Co-expression Network