LOC122346173


Basic Information

Item Value
gene id LOC122346173
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5127490 ~ 5138854 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251106.1
CCAGCCTGGCAGGCTCACGCCTCCCAACACTTCCCCTGAGAGACGGACGCCGCTGAAAGGGTTTGCAATCCAATACGGCAGCTGCACACCAAAGCCAGCGGTTATCATTGAGAGCGCAGGGCCGTCTAAGCCTTCCCCCCTTTCCCCAACCGTTGGGTATACAGGATATTAGCTGGAACCTCTCATATCACCTTTGCCGCAATGGCTAATAATACAGCAGGCTGGAAATCAATGAACCTGCCCTAGATTTCAGCTCGCCGCTCTCCATAAAGGGATCTGGAGGGCAGCGGGGTTTTCGTTTTCTCCccgtttctctcttttctcttatTATAGGGGAAGAAAAATGGGTGACCGGGACTCGGAGATCATTTCTCCCGCTCTGAAAGTGCTAGCCGCTCTCTCCAGGGAGTTGCAGGTTATGTAACGGAGGAGCGGTCGTCATGGCAACCCCTCCACTCCGGTGCCCCGGTGGATGGTTTGATGAGCTGCCAGCAGTAGGGTCACAACTAATGGCATTCCAGCTGTCTGCCATCAGCTATCTGCACCCCACGTCTTCCATCAGCACTGATCCAGGACCAGACTGCAAATTCCAAACCCCTTAACAAGATCATACTCCTAGATGGAACAAAATTCTGCTCTCAGATCAACATGCTCTCCTGATTTGACCAAAATAAGAGGCTGTTAGAGATTCGACTGAAGGAAGCCCCCGCCTCCACCGGGGATTTACCCAGATGCTTATTAAAGAGTTTGAAGAAAGCAAAGGCAGGAAATACCCGTAGGAAATcaaaaagaagGAATTCAACCATGTCACTTAAAGAGGCATGTCAAGGACATCACGTCTGCATCTAATGCGGAGCATGGAGGTGcacGACAACATCAGTGATCAAAGGTTTTCATTAAGGCAGTGATGACAAAGGAGCACAGGCACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251106.1 True 930 lncRNA 0.51 4 5127490 5138854

Neighbor

gene id symbol gene type direction distance location
fastkd2 LOC107673994 coding upstream 160570 4960324 ~ 4966920 (+)
retreg2 fam134a,LOC107706836,LOC107676053,LOC107556270,LOC107750069,LOC107673992 coding upstream 172447 4945839 ~ 4955043 (+)
cnppd1 cnppd1,LOC107706838,LOC107676054,LOC107750058,LOC107549439,LOC107556284 coding upstream 189811 4932455 ~ 4937679 (+)
abcb6a abcb6,abcb6a,LOC107676041,LOC106574324 coding upstream 195512 4922527 ~ 4931978 (+)
LOC122346006 cpo,LOC107556274,LOC108440461 coding upstream 462980 4659870 ~ 4664510 (+)
si:ch211-93g23.2 si:ch211-93g23.2,LOC107725372,LOC107674017,LOC107556277 coding downstream 7054 5145908 ~ 5148890 (+)
ube2f ube2f,LOC107725407,LOC107556276,LOC107674019,LOC107707607,LOC107566887 coding downstream 10174 5149028 ~ 5156356 (+)
erbb4a erbb4a,erbb4,LOC107674013,LOC107707608,LOC107725343,LOC107667809,LOC107557316,LOC108440448,LOC101079286 coding downstream 19125 5157979 ~ 5294440 (+)
si:ch73-383l1.1 erbb4a,erbb4,LOC107705456,LOC108440448,LOC107674013,LOC107702505,LOC107707608,LOC107667809 coding downstream 301211 5440065 ~ 5562873 (+)
lancl1 lancl1,LOC107564761,LOC107702553,LOC107590692 coding downstream 454788 5593642 ~ 5600055 (+)
G1016 NA non-coding upstream 26168 5038720 ~ 5101322 (+)
G948 NA non-coding upstream 149576 4977422 ~ 4977914 (+)
LOC122346140 NA non-coding upstream 208695 4896504 ~ 4918795 (+)
LOC122346166 NA non-coding upstream 499572 4624047 ~ 4627918 (+)
G853 NA non-coding upstream 507761 4619243 ~ 4619729 (+)
G1036 NA non-coding downstream 17868 5156722 ~ 5156981 (+)
LOC122344626 NA non-coding downstream 265758 5404612 ~ 5408298 (+)
G1064 mxa,mx1,LOC107702551 non-coding downstream 454360 5593214 ~ 5626276 (+)
G1061 NA non-coding downstream 475533 5614387 ~ 5622881 (+)
G1060 NA non-coding downstream 476866 5615720 ~ 5623944 (+)
hecw2b hecw2,LOC107674007,LOC107676038,LOC108258347,LOC107706834 other upstream 101576 4979125 ~ 5025914 (+)
gtf3c3 gtf3c3,LOC107706835,LOC107750061 other upstream 150227 4967186 ~ 4977263 (+)
prkag3a prkag3a,LOC107750059,LOC107673997,LOC107676055 other upstream 182649 4938181 ~ 4944841 (+)
G826 NA other upstream 769194 4358007 ~ 4358296 (+)
G824 NA other upstream 770230 4356698 ~ 4357260 (+)
G1168 LOC107725347,LOC107565259,LOC107701771 other downstream 740606 5879460 ~ 5881134 (+)
G1183 actb,actb1,LOC102799139,LOC107581721,LOC103039558 other downstream 918550 6057404 ~ 6087655 (+)
G1318 NA other downstream 1147004 6285858 ~ 6287198 (+)
G1414 NA other downstream 1394648 6533502 ~ 6536957 (+)
G1447 fga,LOC107692636,LOC107565125,LOC107714149,LOC107758872,LOC108439170 other downstream 1572781 6711635 ~ 6845548 (+)

Expression


Co-expression Network