LOC122347488


Basic Information

Item Value
gene id LOC122347488
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1256189 ~ 1263203 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251226.1
TGACGTTTATATGACAAACACCATCATCACAAAGTAGAAGACCATCAATGTACAACAGCAATGCAATAACATCATTACATGGAACatgttttgcatatttgtttgtttagggCCATTTTTGACTATAGTGGTGCCCTAGGCTGTTTGCACTCTGGAGCCAaacaataaattgaatttacattaaattcaatatctacatttaattaatgcattctCAGAATatgaacccatgaccttggcattgTTAGTGCCATTCTGTTGAAAagcaacataaaacatacagtgtaTTAAACcactttaattttattagttAAACAGGTTTAGGCTAAGCCTGGTGCTTAATAAACGCCCTTTAATAATGGAAAAGCATTTCAGCATATGCTTTTTAATCTCAATGCTATTCTGTAAAATAGCAACAAGTTATGTGTGTTACGAAaagtaatacattaaaattaaatgttttgaaaaactcCCTATAATGAAAGCTGATTATAGTgttttttacaatgttaaaatacatcttattttcatattataattatattttatattgttttgtattataatcTATTATACTAATGTCTGAATTAATTATAACCATATTTGAATCACACTTgccatttatttagatttttattatataatatctataaaataactttcatttaagttttttaatgagatttttttttttttttagtttttttatctgtagttttttgtgtgtgcttgtttatttcttttagtttacAGTATAGCTAACACAGGGTCCAATGCTGCTTTTTCTAAAGGTCTTTTACGTTCAGTGGAAGAAAGGTATACAGGTATAGGATATGTTGGCTTTTTCACAGTGGCTTTGACTTTGGCTCAttgtttactgtatatttctcctttttttcgTCTGCTTTTTAGAGTTTACTGTGCATTTTATTCAGCAGAATGAGTGGCAGCTATTGATGGGTCCTTCTTAAACGATTCGTTCGTTTTGAGCGATTCTTTAATGTGACTCTGGAAGAACTAGTCATCTCGGAGAGTAATTCGTTCATTTGCGCATGCGCAATATACTATAGGTTTTGTGCTGGATTTAGTTCGAAAAACTCTGTAGATTAACTAATCAATTCTCTTTACAGATCATACTGCATTGGTTAAAGTTTATGGGGCTGTCACGTGATGAACGAACGACTCAGACACAAAGACTCGTCAGATAAGAAGCTAATCATAGACTCAGCTGCTTTCTCCATCCTGTTGCCTCCTCGACTCTAACCATAGAAAGAGgACAACTTTGGCAATGTGTGACGGAGTTTATGGTTCATCAGTAGGTCAACAGGAGATAACCCACAATGATAACTCAAAAATGTCAGATATTAATTTGCAAAACTTTCTGCTTTTCCACTTGTCTAGGGGTTTCACTATTTCACTATTACTATACTGAGGATTATTATCATTTTGCACAATGAACACAAGTTGCCTTTCATGTATACGATGAAGCACATATCGACGCATTGATGCTGcaaagataattaaaaatgtcttcaacaACAAGCTATTATGCACACTCAGTTATGCCCTCATTGGAATCTAATCTAAGGTTTAATCCATCCTTGGTGAAGAAGAAGAATCACTGTCAGCAATTCGTCATTTCCTCCCAATACGTCAAACCCAGGTTCcaataaacgaataaataactgagcagcacaactgtttaaaTCAGCATATCGATTTCTGATTTCTGGGCTTCAGACAcactttttctgtttaaatacagaTCTATTTAGCCAAGCGTTCACGTGATGTTTCTCATAAGCTTGTACTGCACTTATATCTgatcacattatttttttttttgcttggttgGAAAAGCAAgtctctgtttgtttctgtcatgGGATCGACATCCATGGTAACTAAGAATTGCACAAGTTTACGTCTTTCACCATACTGTTGCTTCACACAGAGCTGTTGAGTCGTTCTATACAGTATTGTGGCATCTTTTGAATATTCAGCGACCTTTACAATATGGTGGACGGCATCTGCATATACATTTCTATGGGTGCTGATGCCTTTATTCCACTTTGAACCTTCATCATATACATCATACTCTTGACTTTTTACAATTCATTACTGCCACCTCGTGGACTAAACGTCCAACTCATTAAATCCTACAGtccctgttgaaaaaacagcacacgctggttaggtatgttctgtagctgggatgctggtttaagttTTTTGACCAAAATGAACCAGcgacatacctaaccagcatgtgatgtttttttcttttttatgtatttgttccCTCTCCGTTCAGCATTAAACCTCCCTCGGATCAATGAAATGTTTTCCTTCTGTGCTGGATGTTGGCGTTCATGATCAATAAATGGTTTGCATTTGCCCAaatttatttagtcaaaaagCAGACGGTGAACGTTAATCTTGTGCTAGCTCCTGTTTAGTTGGGTTCATTTACACGTGGGTTAATTCATCTCTACCGGATATCTGGTTTATGCTAATACAGTGGTATAATGATGAGAGGAAATGAAGAGATCAAAACAGTTGCCCATTGCTGTTGACTTTGAGTCTGAAGTCAGtcgtttaaaaatgtttggagTGATTTTGtggttataataaaaatgtagattcACCTTTTGGAGATGAAGTCAGGAATGttattgaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251226.1 True 2681 lncRNA 0.35 3 1256189 1263203

Neighbor

gene id symbol gene type direction distance location
rap2ab rap2ab,rap2a,LOC105911819,LOC106582448,LOC106512668,LOC101166017,LOC105933629,LOC103391592,LOC105907999 coding downstream 91254 1148672 ~ 1164935 (-)
kpnb3 kpnb3,ipo5,LOC107677849,LOC107653674 coding downstream 119124 1117841 ~ 1137065 (-)
LOC122353706 NA coding downstream 126552 1129499 ~ 1129637 (-)
farp1 farp1,LOC107730395,LOC107677850,LOC107653673,LOC107560794,LOC107744955,LOC107559785 coding downstream 139754 1050746 ~ 1116435 (-)
LOC122342059 ncam2,LOC107748174,LOC107756756,LOC107673712,LOC108426076,LOC107721821 coding downstream 429963 766226 ~ 826226 (-)
slc5a3a slc5a3a,LOC107730390,LOC107677845,LOC107555245,LOC107559792,LOC107746980,LOC107653669 coding upstream 1568 1264771 ~ 1269925 (-)
ptgfrnb LOC107730397,LOC107555256,LOC107653676,LOC107559799,LOC107677843,LOC107746979,LOC107717917 coding upstream 14297 1277500 ~ 1315538 (-)
si:ch211-132g1.1 NA coding upstream 55587 1318790 ~ 1324793 (-)
si:ch211-132g1.6 NA coding upstream 68480 1331683 ~ 1333824 (-)
LOC122350472 atp1a1a.3,atp1a1a.4,LOC107718012,LOC107698905,LOC107555258,LOC107717913,LOC107653679 coding upstream 84291 1347494 ~ 1353796 (-)
G231 NA non-coding downstream 282220 973746 ~ 973969 (-)
G125 NA non-coding downstream 365602 890244 ~ 890587 (-)
G99 NA non-coding downstream 532153 723745 ~ 724036 (-)
G73 NA non-coding downstream 807549 448328 ~ 448640 (-)
G72 NA non-coding downstream 808307 447508 ~ 447882 (-)
G244 NA non-coding upstream 19635 1282838 ~ 1284809 (-)
G247 NA non-coding upstream 81095 1344298 ~ 1346789 (-)
G260 NA non-coding upstream 177885 1441088 ~ 1441512 (-)
G297 NA non-coding upstream 303835 1567038 ~ 1567532 (-)
G303 LOC107698893,LOC107555241,LOC107751081,LOC107653672,LOC107571885 non-coding upstream 317540 1580743 ~ 1582087 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 24542 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 507825 738137 ~ 748364 (-)
G67 NA other downstream 820064 435808 ~ 436125 (-)
G20 NA other downstream 1069104 186420 ~ 187085 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other upstream 328866 1592069 ~ 1604984 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 1425562 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 1873305 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 2744637 4007840 ~ 4014287 (-)
G820 NA other upstream 3035107 4298310 ~ 4299193 (-)

Expression


Co-expression Network