LOC122350307


Basic Information

Item Value
gene id LOC122350307
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 23181003 ~ 23182431 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251593.1
CGCGCGCCACATAGGTGCAAGGTTTAATAATAACCAGTCATTGTATAATATAAACGTAACGATGCattagttattaataaataactaacaTTTATGTCACACCTCAGTTTTCAAAGGGAAAAGAGACTGTCTAATCAGCGAATGGAGGATGTGGTGCATGCATACTTCTGGGATTTAAATGACTGTGGTGGCAATACAGCAATATCTCAAGAGGAAGTATGGCTTTCAGTTTGAAGAAAAGAGGAAGTGctaaagcaaacacaaaacaatggaaaaaacaCGGAAACGTGACCTCTCAATGTCATCTCGGGCCGTTCTGCTTACTGTGACCAGGATCTCCTAACCCAGATTTCTGCTTCAATAAACGTTTCTTCAGCCAGCAGTATCTCCGAGACAGTTCAAAGGGTGGTTAATTGCACTGCACTTGAGAACTGACATGgtagaaatttcattttttgttaacTAAAGTTATATAAGAGCTGGAAAGTTCATAAACAAAGAGCTGGAGAGTTTCACCGTTAcaagttaatatataaatgcgaTTAAAAAAGGGCAGGGAGGACAAAAACTCAATTAAACTCATTCTCACTATTGCCTCTCTGATTATGTGGAAAACATTATCCACTAAAATCACGTTAgcaataatatttacttttttgccTTCCCCTTTTTAACAATTGGAATTTTGAAGGGAACCATAACAAACCACAGGCCTTCGCTCCAGAACACCACCACTTTGATCAAAATGAAATCATCGCTTGCTCCGCAACGATGGGCTGATTGGtgctctctcactcacacatgGTGCACACATTTTTGGGAGCCCGTGCCTGAAACTCACAAGCGCTTGTGCTACTTTTGTGTTCAGGAATAGGGGATTGTCATACGACTTTCATTAGCGCCGCTATGAATGATGAATTGATATCCTTTTACAATACACgacaaaatgaaattaaaaggtTTGCAAAAACCTCCTCTGAGAAATATGACGGTGCATGTTTGCCATTTagtgttttttgggggttgtttttattaagatttaataaaagatcacacagttgttgttgtttttttcat

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251593.1 True 1077 lncRNA 0.38 3 23181003 23182431

Neighbor

gene id symbol gene type direction distance location
sh3pxd2aa sh3pxd2a,sh3pxd2aa,LOC107692111,LOC107746291,LOC107746053 coding upstream 33703 23064152 ~ 23147300 (+)
stn1 obfc1,LOC107566536,LOC107746306,LOC107572935,LOC107683323,LOC107746305,LOC107746065 coding upstream 117653 23059632 ~ 23063350 (+)
trnae-cuc_5 NA coding upstream 121900 23059032 ~ 23059103 (+)
lrrc58a lrrc58a,LOC107566535,LOC107746289,LOC107676832,LOC107746054,LOC107692112,LOC107572937 coding upstream 122847 23054530 ~ 23058156 (+)
fstl1a LOC107566530,LOC107746304,LOC107676844,LOC107746068,LOC107692113 coding upstream 127068 23044523 ~ 23053935 (+)
cfap58 cfap58,LOC107746299,LOC107583211,LOC107659560 coding downstream 22958 23205389 ~ 23276768 (+)
sorcs3 LOC107746061,LOC107566138,LOC107684317,LOC108443686,LOC103372478 coding downstream 502364 23684795 ~ 23732246 (+)
caly caly,LOC107583165,LOC107684294,LOC107675961,LOC107729363,LOC105891014 coding downstream 1001650 24184081 ~ 24192107 (+)
msx1b msx1b,LOC107569049,LOC107675944,LOC107706889,LOC107684328,LOC107583240,LOC107729361 coding downstream 1033380 24215811 ~ 24218006 (+)
taf5 taf5,LOC107676012,LOC107574147,LOC107583167,LOC107684290 coding downstream 1060263 24242694 ~ 24250298 (+)
LOC122350314 NA non-coding upstream 26702 23153734 ~ 23154301 (+)
G5522 neurl1,LOC107746293,LOC107746052,LOC107692176,LOC107676877 non-coding upstream 27405 23149192 ~ 23153598 (+)
LOC122351271 NA non-coding upstream 136869 23042249 ~ 23044134 (+)
G5289 NA non-coding upstream 315213 22864834 ~ 22865790 (+)
G5264 NA non-coding upstream 371973 22807650 ~ 22809030 (+)
G5548 NA non-coding downstream 288839 23471270 ~ 23471530 (+)
G5553 NA non-coding downstream 306685 23489116 ~ 23491559 (+)
G5552 NA non-coding downstream 307564 23489995 ~ 23732723 (+)
G5551 NA non-coding downstream 309183 23491614 ~ 23735603 (+)
G5554 NA non-coding downstream 310183 23492614 ~ 23493639 (+)
LOC122348949 LOC107676845,LOC107560973,LOC107718848,LOC107692180,LOC107603005,LOC107746297,LOC107735984 other upstream 329610 22840688 ~ 22851393 (+)
G5037 fbxo41,LOC107567034,LOC107692170,LOC107711519 other upstream 1545951 21632215 ~ 21635052 (+)
rnf24 rnf24,LOC107689472,LOC107551705,LOC107567054 other upstream 1560411 21590877 ~ 21620592 (+)
LOC122348864 ctnna2,LOC107706127 other upstream 1819563 21321462 ~ 21361440 (+)
pold4 si:dkey-28b4.7,pold4,LOC107730517,LOC107746491,LOC107664544,LOC107674245 other upstream 2937654 20241818 ~ 20243349 (+)
G5559 epc1a,LOC107568137,LOC107654560,LOC107753261,LOC107653121,LOC107582192,LOC107706605 other downstream 360633 23543064 ~ 23554625 (+)
G5649 LOC107676039,LOC107729348,LOC107594453,LOC107578077,LOC107729349,LOC107676194,LOC107706808 other downstream 1101051 24283482 ~ 24293329 (+)
hadh hadh,LOC107594428,LOC107729339 other downstream 1374366 24556797 ~ 24558929 (+)
G5817 NA other downstream 1521417 24703848 ~ 24704319 (+)
LOC122329747 ndufaf5,LOC107594415,LOC107583196,LOC107684300,LOC107675590,LOC107756989 other downstream 1801615 24984046 ~ 25398340 (+)

Expression


Co-expression Network