LOC122351936


Basic Information

Item Value
gene id LOC122351936
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1991877 ~ 1997037 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251817.1
AACCTTGAATGTGCTTGTGAACCACCAACCAGGATCCACGTAAAACCAGGGGCAGTTTCAGGACTTTTTCTAAAGTAAATGTGCTCACTTCCAAAGAAAAGAGACATGTGGTCAGGTCACCCATATTTTTAGGATTCTGGCATCACCTTAGTTTGATTTTACTCACTTTTTATGTTCCAAAAACCGATGTGTCAAAGCCTGCTCTGTTGAGCCTGCGGCTTTATATGAGGCTGATTCAAACCAGAAAATGCTTTGGTGCATCATAATAACGACTTAAAAAGTTATAATTGTGACAGAAAATTCTAAATTGACATATATCTTAATTAGgacaaaaagtcaaatttatgagattttaaaaaagtcatacTAAATTATAATTCTGAGATTGACCCTTCAGAGCAGTTCTTTCGGATGGAACGCAGGGTGTCACGCCAAAAAACGTCCTTCTGCAAAGGATCATGGATCCCTTTTGAAGAGCTCTTTCATCTTACACCAGTCCCAAACAATAAGACAAATTTGAGAGCATTCCCAACCTTGTGGTCCAATTTTAGGCCTTTTGTTAGAGCTGTCCGCAAGAACGCTGTACGAATGAGTCCACCTAGCAGTAATGCTGACTCACTGGGGCGGTGTTGCCTTCCTGGCTGTCTATGATGTACTTCCTCAGAGCAAAGCGTTCCTGCTTCCCAAGGTTGCCTTTCCTGGTTGACCTTCGGCTCAGCTTCCACGATGGGGTTCGTCACACCCTTCCAGGAACCAAACGGCTACCAAGGGTCTGTGGAAGATATAACTCTTCTGAAGGGATATGATGACGTCTGCTCGACGACCACGCCTCGAAACCCTGACAGCTAGCGTTAGCATTGGCTAAAGCACCGAGCTCTGGCGGTCCTCCAATGAATGATGTTGAAGGTGGACAGAAGGTGGCCTCCTCCTACGGCTGGGTCTGGATGAGAGGAGCAGCTGTGACCGGCCTcctcactcttaaccctgtgaAGCCCGGCATatgaaacatataaaaatatggaGCTGTTTATGGAAGATTTGGACAATGCATTACTATCGATTTTGACAGTCCACTTAAGACATTCTACAAAGCAAGTAACTAAATGtcttacttactgttagtagaatatctatcaaaataaagtttgcGTATGTGTTTCTATCAGGCTTTCAGGgtcatgaagaaaaaaacagctcacTTTTATCCAGAGGCAacaattctgatgtttttaatgtaaaaacgaAAGGATGAAACATATAAAGCAGTGCTGACGGAGAGCTGAGGAAATaaaggctcctcagaagatgtgagatgttttggagaTCATTGCTCCGCTGAGGAACAGCGAAAGTAAAGATGTGATGATCAGACTCTTCTAGAAAGTGACTGATGGAGAATCGAGTGAAGCTGTTCATCTGGAGATATGACCGCAGTTATTCTGACCTTTACTTGATCAGAATCAGTCCAGATGCGGCAGAAAACTACTCTACGGCTTTAACTAGTCCACAGAAGGGACACAGAAACAGCAAAACTGATCAGATATGATGCAGCAGGCTTTATAAGGTTAAAGCGTGTCCCTCTCCTTCTCGTGCACAGGATGGCTTTATTGCAGGACACCTGGGAATCTCGTTGGATCGCGATCACTCGTTTCACTCGTTTCACTTTTATTGTATCCTGCTTTTTGAATGGGATATATTCTGACTGGACGCTTTCAGGCCCACCTGCCATCTCCCGCTCATTGGTCAGAGGACAGGGAGGTGAGGAACAGGGATATTCTGGAGTCGGAGCCCGGGGCTTTTCCTTCCTGTGGTTTAATGGCTCACTGACGGTGACCGGCTTTCATCTGAGCGGGTGAATATCTCACACAGATCCGCCTGAGATGATGCACAACCCCCGGGGAAGTCCAGGGAAATCAGGCCGGATGACAGGATATGCTCAGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251817.1 True 1942 lncRNA 0.45 3 1991877 1997037

Neighbor

gene id symbol gene type direction distance location
n6amt1 n6amt1,LOC107563652,LOC107727005,LOC107698915,LOC107689945,LOC107751077 coding downstream 23015 1962314 ~ 1968862 (-)
wu:fa56d06 LOC107555251,LOC107751082 coding downstream 379795 1605876 ~ 1612082 (-)
urp2 LOC107698908 coding downstream 522776 1465437 ~ 1469101 (-)
rcan1b rcan1b,LOC107555267,LOC107698909,LOC107568778,LOC107653682,LOC107718018,LOC107709340 coding downstream 536806 1442791 ~ 1455071 (-)
LOC122350642 atp1a1a.4,LOC107717913,LOC107653679,LOC107555265,LOC108429865 coding downstream 578931 1404578 ~ 1412946 (-)
LOC122342174 adamts5,LOC107751075,LOC107593743 coding upstream 154614 2151651 ~ 2155943 (-)
jam2a LOC107751072,LOC107593737 coding upstream 227052 2224089 ~ 2235491 (-)
mrpl39 mrpl39 coding upstream 242101 2239138 ~ 2244571 (-)
LOC122351091 cenpq,LOC107748325,LOC107665818 coding upstream 263680 2260717 ~ 2267466 (-)
mrpl16 mrpl16 coding upstream 271225 2268262 ~ 2271714 (-)
G380 NA non-coding downstream 44457 1947033 ~ 1947420 (-)
G378 NA non-coding downstream 48944 1941951 ~ 1942933 (-)
G372 NA non-coding downstream 98687 1889976 ~ 1893190 (-)
G358 NA non-coding downstream 124512 1866640 ~ 1867365 (-)
G347 NA non-coding downstream 207365 1783195 ~ 1784512 (-)
LOC122350950 NA non-coding upstream 16042 2013079 ~ 2017454 (-)
G402 NA non-coding upstream 69500 2066537 ~ 2066858 (-)
G584 adamts5,LOC107751075,LOC107593743,LOC107698897 non-coding upstream 172918 2169955 ~ 2173665 (-)
G554 NA non-coding upstream 191464 2188501 ~ 2219729 (-)
G567 app,LOC107698920,LOC107593741 non-coding upstream 194796 2191833 ~ 2203918 (-)
LOC122343438 son,LOC107698912,LOC107555269,LOC107698212,LOC107571887,LOC107709257,LOC565999,LOC107751080 other downstream 386893 1592069 ~ 1604984 (-)
mbnl2 mbnl2,LOC107677847,LOC107653675,LOC107559795,LOC107555253 other downstream 760230 1076188 ~ 1231647 (-)
LOC122342053 trim25l,LOC107582366,LOC107746627,LOC107557130,LOC107686775,LOC108430858,LOC107723752 other downstream 1243513 738137 ~ 748364 (-)
G67 NA other downstream 1555752 435808 ~ 436125 (-)
G20 NA other downstream 1804792 186420 ~ 187085 (-)
G654 LOC107751054,LOC107570078,LOC107662112 other upstream 691728 2688765 ~ 2689464 (-)
gpc5a LOC107677851,LOC107658649,LOC107730387,LOC107553999,LOC107560792,LOC107739379 other upstream 1139471 3136508 ~ 3284786 (-)
G782 slitrk1,LOC107756981,LOC107570247,LOC107744763,LOC107556534 other upstream 2010803 4007840 ~ 4014287 (-)
G820 NA other upstream 2301273 4298310 ~ 4299193 (-)
mdh1b mdh1b other upstream 2959082 4956119 ~ 4960210 (-)

Expression


Co-expression Network