LOC122352587 (cntfr,LOC107554853,LOC107756542)


Basic Information

Item Value
gene id LOC122352587
gene name cntfr,LOC107554853,LOC107756542
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 2717097 ~ 2767195 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU110123
TGACCAATGAGCAATGTAAGAGcatcatttataaatcataataagCATACAACATTACTCATGCGGCTGAACTACACTTTTTCTAATTATGTGCAAGCTCACAATACACTTGAGACACCAATAACTAACTAATAGTCAGAACTTATGCACAGTTTATTAAAGAGATACTGTAACACAGTGAGTAACCAAAGCTGTGTCATGTTTGTTCCCCTCATTATCAGAGTTAGAGTCTTGATTTCGT
>XM_043250042.1
TCGGTGCCACCCAGTTTCTCTTAGGCAGGCCAGAAGCCTCACGATCtacctctgtgtgtgtttctgcagatgGCCAACATTGTGACGTCCTTCTGCTGTGTGGTGCTTGCAGCCGTGGTGGTGGTTTATGCCCAAAGGCGCAGCCAGCAAGGTGCCAGGATTCAGTATGAAAGAATAGGAAGTGATGTCACTATGCAGTGCGGTTCGCTGGACAACGACGCCTCTGTAACATGGAAGGTGAACGGTACCGACGTGAAGGCCCGTAGGCGGGAAGAAGGGCCGCGGCTCATCCTGATGGAAGTAAACATGAGTAGCAACGGCCTCTACAGCTGCTTCCAGAACCCCGACGGCCAGCGCCGCGACCAGATCAATCTCCGCGTTGGACTTCCTCCGAAGGAACCGCAGGTGGCGTGTCGATCAAACACCTATCCCAAAGGCTTCTACTGCAGTTGGCACCTTCAGCATCCCACCTACATCCCTACGGACTTCGAAGTCGATGTCCAacacAACCAAAGGCCCCTGGAGGTGACGAGGGATGAAGTTCATAAAAACAGATGCCATGTGAAGTTTCCGGAGCTTTTCTCCAGCTTTCCTTACCGGGTCAACGTCACGGCGGTGAACTCGCTGGGTCGAGCGTCCAACGCCATCAGCTTCGAGGAGTCTTCGATAGTGAAACCCGACCCCCCTGAGAAGGTGGTGGCCAAACCCGTAGCCAACAATGCACGAAGACTAGAGGTGACCTGGAACAGTCCCAGCACGTGGCCCGATGTGGAGACCTTCCCGCTGAAGTACTTCCTGCGCTACCGGCCGCTCATCCGAGACCAGTGGCAGCACGTGGAGCTCTCTGACAGCACCTCCCATATCATCACCGATGCCTACGCGGGGAAGGAGTACATCATCCAACTGGCGGCCAAGGACATGGAGATCGGCACTTGGAGCGACTGGAGCGTGGCGGTCCACGCCACCCCCTGGATGGAGGAACCCAAGCCCATCACCTCCACCACTGAGAGCGACATTATCCCAGAAACCACCCCTGGACCGCCTTCGGCCGCACCACGAGTGGGTGAACCCACAGCAGCCTGCTCCACCCTTCTCTGGTCTACCCACCTGCTCCTGGCCTGCGTCCTGCTGTCCATCATGTGGTGCGTGACCTCACTACAATGCTATTTCCATGCATCTCAATCACTGTCCTTATATATCATGAGCTTTCAATGCCACAATTCGAACAATGCATCAGGTATGACCAATGAGCAATGTAAGAGcatcatttataaatcataataagCATACAACATT

Function

symbol description
cntfr Predicted to enable cytokine binding activity and cytokine receptor activity. Acts upstream of or within positive regulation of axon regeneration. Predicted to be located in membrane. Predicted to be part of receptor complex. Predicted to be active in external side of plasma membrane. Is expressed in several structures, including central nervous system; cranial ganglion; hindbrain neural plate; immature eye; and pectoral fin musculature. Orthologous to human CNTFR (ciliary neurotrophic factor receptor).

NR:

description
PREDICTED: ciliary neurotrophic factor receptor subunit alpha-like

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0004896 cytokine receptor activity molecular_function

KEGG:

id description
K05059 CNTFR; ciliary neurotrophic factor receptor

RNA

RNA id representative length rna type GC content exon number start site end site
TU110123 False 241 lncRNA 0.35 1 2717097 2717337
XM_043250042.1 True 1296 mRNA 0.55 7 2717282 2767195

Neighbor

gene id symbol gene type direction distance location
sigmar1 sigmar1,LOC107653128,LOC107573076 coding downstream 353533 2360768 ~ 2363564 (-)
katnal2 katnal2,LOC102797751,LOC104955398,LOC107573073 coding downstream 356964 2351663 ~ 2360133 (-)
si:dkey-88l16.3 LOC107667258,LOC107738845,LOC107743196,LOC107548646 coding downstream 488107 2198983 ~ 2228990 (-)
parm1 NA coding downstream 531054 2181795 ~ 2186043 (-)
sh3bp2 sh3bp2,LOC107667261,LOC107705055,LOC107558670,LOC107743173,LOC106568140 coding downstream 592365 2107110 ~ 2124732 (-)
tmem267 si:busm1-79m10.4,LOC107653487,LOC107702605,LOC107756535,LOC107750222,LOC107554236,LOC107554852 coding upstream 14956 2782151 ~ 2787777 (-)
rassf6 LOC107750196,LOC107554850,LOC107554244,LOC107756540,LOC107653501 coding upstream 22358 2789553 ~ 2796224 (-)
musk musk,LOC107653500 coding upstream 29650 2796845 ~ 2808986 (-)
lpar1 lpar1,LOC107554848,LOC107723319,LOC107756539,LOC107554242 coding upstream 62782 2829977 ~ 2850728 (-)
LOC122352946 epha5,LOC107702602,LOC108428864,LOC107709147 coding upstream 131156 2898351 ~ 2964433 (-)
G74367 NA non-coding downstream 256945 2459812 ~ 2460152 (-)
G74364 NA non-coding downstream 262235 2453158 ~ 2454862 (-)
G74345 NA non-coding downstream 366431 2350461 ~ 2350666 (-)
G74346 NA non-coding downstream 367406 2349335 ~ 2349691 (-)
G74324 NA non-coding downstream 466216 2248148 ~ 2250881 (-)
G74436 NA non-coding upstream 13447 2780642 ~ 2781516 (-)
G74455 NA non-coding upstream 122250 2889445 ~ 2889948 (-)
G74459 NA non-coding upstream 282037 3049232 ~ 3049518 (-)
G74533 NA non-coding upstream 542592 3309787 ~ 3533716 (-)
G74537 plppr1,LOC107750956,LOC107702599,LOC107710008,LOC107653496 non-coding upstream 683342 3450537 ~ 3454994 (-)
LOC122352692 NA other downstream 519668 2194085 ~ 2197429 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 870195 1774223 ~ 1846902 (-)
nrarpa nrarpa,nrarp other downstream 1229089 1483399 ~ 1488008 (-)
G74031 NA other downstream 1243219 1466751 ~ 1473878 (-)
G74058 NA other downstream 1268211 1445323 ~ 1448886 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other upstream 570144 3337339 ~ 3377784 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other upstream 834417 3601612 ~ 3607788 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 1138419 3905614 ~ 3912742 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 2252112 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 3770927 6538122 ~ 6540973 (-)

Expression


Co-expression Network