smg6 (LOC107728864,LOC107589291,LOC107686181,LOC107578000,LOC107697428,LOC107743389)


Basic Information

Item Value
gene id smg6
gene name LOC107728864,LOC107589291,LOC107686181,LOC107578000,LOC107697428,LOC107743389
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 13773844 ~ 13786662 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250168.1
ATGACTTTTTTGGCCCTACCAAGTCgccgtgtgtttgtgtttggttCAGACGAAAATGGCGGACGAGCTGGAAAGAGTACGAATTTCAGCCGCGGAGCTACGAGCAGAAGCGTCGAATTTCACCACACACAGCGGCAGTATTAAAGAATTGAGAGAGGAGGGTAAGAAGCACCGCCAACGAGACTGCAAACGACCAGACTTGCAGTGGTACAAACCTGGTGCTGCCCATCCACGCAGACGTAAAGACAGCGCAGAAGGAGCCGGCTCAGACCCTATGCATCCACCAGACGATTGTGTATTTGGTAATGACACCAAAATGCCTGACGGCTCACCTGCCAGTCCTGGGTGCTCTCATGTAAGCACTGGAGAGTTTCCAAATGATCACAGCCAGCCTGAAGCAAATCATAACACTAAAGGACATGTAGGCAATAATAACGTTCTGCTTGTTGATGGAAATGCTGTTAAAAGCATTGAAGGTGCCGGTACACCCAGATCACCAAAGCAGTCGCGAAAGATGCGTAAACCTGACCGTGAGATATATCAGCCAGGGGGGCGAAGGTCTCATGTACACAAAGAGACAGGGGCGAACAAAGAATTAGATGGGGATCGaagaagagaggaggaggaagaagtgAGTGGAAAACCTGCTGAATCAACTATTAAGTGTGAGAAAGAGGAAAAGCGTAGAAACAGGCGAGGGAAAGATGGTAGGAAAAAGCAAGAGTCAAAGGGAACTGCAGACTCCCCTTcggcaaataaaaatgagaataatGTTGAGAGTATCACGGGTAAAGTTAGCAATCTCCATTTAGGGTCTGAAGAAAGCAAAGATGGAGCTGGTCAGGATGGTACAAAAAGGAGAAAACCTAGTGGGGAAGGGCGAAGGAGCCAAGCAGGTGGAGGGAATGAAGTGactggagaagacaaaaaaaaggagagGGGTAATGGAAAATCCAGAGCAGGAAGGGAGAAAAGTAACAACCAGGGCTTTGCCAAGAATGAAGAAGGggaaggaggaggaaaaggCTCAGAAGCAGATCAGCCTGAAGGAAAAAAGCAGAGAAATGTTGGCGGAAAAGAGGTGAGCCGTGACCAGAACATGAACCATGAAAATAAGCAAGGGAACAGGCCAAAAGACAAAGGCAGACCATCTGAGAGAACCGATTCAAACCGAGTCAACTCTGCCTCTAAGCGCTACTCTCAGTCAGACATCCGGCGTCCTCGAATCCGCACCTACAGCACGAGTTCGGCCAGTAGCGGGACCAGTATGGACGGTCTGGCTGAGGCTGAGAGACTTCGAGGGGAGGGCCAGCAGCTGGCCGCACGGCCTGGGCAGAGGACCGCTGGACAGAAGGAGTTCGTTCGAGGGAGCCAGGGGCGCCCGAGGAGACGGACGGCACGGACACTGTCCTCCACCGATTCGCTGGAGGAAAACGAGGTGTGGGAGAGAGAAGATAGAAGAGGCAGAGCTGCTGACGAAGCCAAGAGCTCCCACAAAGGTCCTGAAGGGGGCGGAAGAGGGCAAAGAGTGCCTGCGTCTAGCACTCGAGGAGGAATTTTGAGAGTTTCTTTGGACAAGCATTCAAACGAGGAGCAAGCGAGTCGAAAAAACCCTAGAGGTCGTGGGAGGGGCATCCTAGTGCTTCCAGCCCACACTGATCTAACTTTGACCCCTGAGCCAGGGCCTCAGCTTGGAGCAATGAGAGGAGGAATGGGCCTCGGCCGAGGAAGAGGCGGCCGTGGAGGAGGGACAAGGCGCCTTTGGGACCCAAATAACCCGGATAAGAAACCAGCACTTGTGTCAAGCCAAAAATCCCAGCATGCATCTCTTCAGCAGGCTTTGTACTTGCAGCAAGGTGGATGTGGGCCGCTGCACTTTCTGGACACTGATGACGAGACCACAGGAAGTCCTCCTGTCCGACAGGGAGAGTTTTTTCAAAACAAGCAAGCTGCTGCCATGGCTTTCTACAAATTCCAGAATTCTGACAATCCCTACTGCTATCCGCTATCGGCCAATTCCCCAAACACCCCGCCACGCTATCCTTACCCATATCACATTCCCTACCAAATTCCTGGTTCCAATGGGATGTATCCCGCCTCTGTGTCACCTTTTTATGGACCCTACGGGCAAGGTGGGCCAGGTTATCCCTCTCCAGCTGGATCTGGTCTGACTCCAGAAGAGGCAGAGGTGCAGACCAGAGGAGAGTTGGGAAAGTTGCTTCGGCTGGCTGACAGTCAGGAACTCCAGCTCAGTAACCTGCTGTCCCGGGAACGACTAAGCCAGGAGGGACTGGAGAGGATGGCCCAGCTTAGAGCTGAACTCCTGACATTATACGAGCGGGTGATTTTGACAGACATAGAGTTCTCCGACTCTCAAAACCTGGATCAGGCTCTGTGGAAGAATGTGTTTTACCAGGTGATAGAGAGGTTTAGGCAGCTACTGAAGGACCAGGCATCAGACACAGCCCTGCAGATAAAAACCATGCTCATGACGTTACTGGAAGAGGGGGCGGTATTCTTTGATTCGCTGCTACAGAAGTTGCAGACTGTTTTTCAGTTCAAGCTGGAGGACTATATGGACTGTATGGCTATTAGAGCAAGACCTCTACGCAAGACGGTGAAGTATGCTTTGATCAGTGCCCAGCGCTGCATGATCTGTCAGGGGGATATCGCACGATATCGTGAACAGGCTAGCGACTCGGCTAACTACGGAAAGGCACGCAGTTGGTATCTAAAAGCTCAGCAGATTGCTCCAAAAAATGGAAGACCCTACAATCAACTGGCCCTGCTTGCAGTGTATACGAAGCGAAAGCTGGATGCTGTATACTATTACATGCGTAGTCTAGCCGCCAGTAACCCAATCCTCACAGCCAAGGAGAGTCTGATGAGTCTGTTCGAGGAAGCCAAGCGCAAGGCTGACCAGATTGAACGTAGACGGAAGCAGGAAGCAGATGGAGGTACCCGTGGTCCCCGAGGTCATGTAGGTGGGCGGCGTGGTGAGGATGCCACCCGTATGGAGATCTGGATACGTCCCACTGGGCATCCGGGCACTTCTCGTCCGACAGGCAGTGAATCAGGCAAAGACTCTGAGCAGGACGGAGAGCTGGGAACTTTGAGTCCCAGTGATCTCAACAAAAGGTTTATACTGAGCTTCCTGCATGCTCATGGAAAGCTCTTCACTAAAGTAGGGATGGAGAGTTTTCCCGCTGTAGCCAGTCGAGTGTTGCAGGAGTTCCGGGCCCTCCTCCAGCACAGCCCCTCCCCCCTCGGCAGCACACGCATGCTGCAGATCATCACTATTAACATGTTCACCATCCATTACGCACAGATCAGAGCTGAAGGGCAAGGTGAAACTCGGTCTGTGTTAGAGGAGCAGACTATATCTCTTGGTTTAGCTATGTTTGGTCTTCTTGTGCAACGTTGCACTGAACTCCTAAAGGAAACACCTGCTGAGCCTATTCCAGCAGAAGAGCTGGGGGAGTTTGATGAAATGGACGATGAGGAGGGGATGGTGCGTGTGTCTGTCTTCGCTCCTGACCTCAGAGAGCTGCTGCCCGGCATGAAGGTCTGGTCCGATTGGATGCTCGGCCACCCGGAGAAGTGGAACCCTCCTCCCTGCAGTATTCAGGGAGGTCCAGATGTGTGGCAGTCTCTTGCAGATCTGTGCAACTCTTTGGCCCGTGTGTATCACGGGGAGGTTCTGCTGTATAAAGCTGATGTAGATGGAGAAGGAGATGAGGAACTCAGAGTCCTACAGCTGGAGGAGGACAAAATGCTCTCTGGCTTTGTCCCGCTGCTCGCTGCCCCACAGGAAGCTTGCTATATAGACCAAGGAACTGATGCGgcTATAGCAGCAGACTGTAAGAGGGTGACCGTTCTGAAGTACTTCCTGGAAGCTCTTTGCGGTCAGGAAGAGCCGCTGCTGGCTTTTAAGGGAGGAAAGTACATTTCCATGGCAACACCTCCTACACCCAGCGTAAACACGGAGAACAAGGCTCAAACACAAGAACAGGAGGATGATGTGATTGTGGAGGAATCGTCCCTCTCTGCATCGGAAGGAGAGATTGATGGAGAGATGGAAGGAGACGGAAGTGAGGATGATATCAGAGAGCTGAGGGCACGGCGCCACGCTCTCGCACACAAGCTGGCACAGCAGCAGAAACGGAGGGACAAGATACAGGCTGTTCTGCAGACGGGTGGGCAGCTGGAGATTGAGATCAGGCCTTTCTATCTGGTCCCGGACACAAACGGCTTCATAGATCATCTGGACGGCCTCAGGAAGCTTCTAGCCTGTGGGACGTACATCCTAGTTGTGCCTCTTATTGTGATCACGGAGTTGGACGGCCTGGCTAAAGGGCAGGATAGTCGTGAGGGGGTCGGTAATGGTGCCCATGCCCGACAGGTGCAGGAGAGAGCCAGAGCAGCGGTCATGTTTCTGGAGAAAGCGTTTGAGTCTAGAGATCCCTGCATCAGAGCGCTCACCAGCAGAGGAAACACACTGGAGTCCATTGCTTTCCGCAGTGAGGACACTTCTGGCCAAAAGGGCAACAACGATGATGTCATCCTGTCCTGCTGTCTGCACTACTGTCAGGACAAAGCCAAGGACTTCATGCCTGCTGAGAGAAGTGGGCCGGTGAGGTTACGCAGGGAGGTGGTCTTGCTCACGGACGACCGCAATCTCCGAGTCAAAGCTCTCACACGCAACGTACCGGTCCGGGATATCCCAGCATTCCTGATCTGGGCCAAAGTAGGCTGAAGCGCAGACGTGACTTACCGCTGTACAAACCAATCATCCTCCACTGCAGAGGTCGGAGAAGAAGAAATGATGTCACACAGAAAGGATGAATATTAAGGGGAGAAATACTACAAGCTTTTTGTCAAAccgacaaaataaaaaaacaaaaagagcgGAGTGACGCATCATGCCCCTTTACAAGGAAGAAATGAGGATTTTCCCCTTACTACGCAGCGTGCATAGACAACCGCTTACTTCtgagggtgagagagagaaaccagCTTAGCTGATTCGGCCAGGATGAAGAGGAAGCACGCGGGGTGCacgtgtgtgagcgagagagtGTCAGCttgtagtgtttgtgtgaagtcAGACGCGCTGCGGATGAGCTCATTCCAGCGCTCGGGCCGCTCTTAGGGCCTGCGATGAGGCGAGAGCTCCAGTAGGGGGCGGCGTGAGGCGGCCCGCGAGGCCCCGATTACGTTTTCATCGCCTCAGTGCATGCTTGGTTGGCTCTGAGCATGATTGTTTTAaagctctttttattttacctgCTTATTTAAGTTttcatagcttttttttttttttttggcttgagTTTGGACCATCAGGTTCTCGTTTTCATTTAGGTCACGTGGTTTAGTTGTCACACCCTCGTAACCGTTCGATCTTCTGTAGTAGCAGCATCTTTATAAGTGTGTGAATCCAAGTCAGAATGTAAGATCGTAATGTGTGTGTCGGTTAAACGCTGAATGTGTCGTCACTAAAATGAGGCTGTCAACACATTGGCTTATATTTAGCCAaacttttttctcatttatactTCTGCCTTGGAAATGTTTTCAGTTGTTCTGtgcaaattattttcatatctgTATTAAGTGGAGTGGTTTGTCTGTGCTTGCGTTTGTGTTCTTCATTAGCAAAGCTTAAGTATTGTAGTTCTAACGGGACCTGGTATGTCATCTTGTTACAgtcttattgttttattgctaatatatatatatatatatcctcccCTTTCTGTTGTGTGATTAAGAAAAAAGCAGCATTCGAATTATTCACCTCTGGTCACAAGTCTTCCTAATTTGTTTTTAGTGTTGTGGATTTAATTAAAACTCATTTCTGCGTTAA

Function

NR:

description
telomerase-binding protein EST1A

GO: NA

KEGG:

id description
K11124 SMG6, EST1A; protein SMG6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250168.1 True 5869 mRNA 0.51 19 13773844 13786662

Neighbor

gene id symbol gene type direction distance location
si:ch211-244c8.4 si:ch211-244c8.4,LOC107728884,LOC107686180,LOC107743390,LOC107697427,LOC107577989 coding downstream 15585 13754169 ~ 13758259 (-)
gabrr3a gabrr3a,gabrr3,LOC107589257,LOC107697425,LOC107686176,LOC106563567,LOC106603079 coding downstream 63396 13699234 ~ 13710448 (-)
rhbdd2 rhbdd2,LOC107728880,LOC107686174,LOC107577912,LOC107697423,LOC107743386 coding downstream 89707 13681141 ~ 13684137 (-)
prr11 LOC107728831,LOC107686171,LOC107589205,LOC107579091,LOC107743468,LOC107697420 coding downstream 111705 13659137 ~ 13662139 (-)
smg8 LOC107686170,LOC107589184,LOC107577889,LOC107743383,LOC107697419,LOC107728850 coding downstream 115157 13654755 ~ 13658687 (-)
LOC122352428 LOC107686199 coding upstream 224882 14011544 ~ 14014981 (-)
LOC122352429 LOC107578824,LOC107743443,LOC107697381,LOC107686201,LOC107743445,LOC107697382 coding upstream 229975 14016637 ~ 14017638 (-)
LOC122352430 LOC107743476,LOC107578847,LOC107743445,LOC107589561,LOC107583406,LOC107697382 coding upstream 236173 14022835 ~ 14023833 (-)
LOC122353045 LOC107697402,LOC107743478,LOC107589583,LOC107583407,LOC107579166,LOC107686204,LOC107741179,LOC107743480 coding upstream 240023 14026685 ~ 14027683 (-)
LOC122352431 LOC107589561,LOC107583406,LOC107741179,LOC107589922,LOC107579158,LOC107686204,LOC107589583 coding upstream 243489 14030151 ~ 14031155 (-)
G77315 NA non-coding downstream 103398 13669972 ~ 13670446 (-)
LOC122352841 NA non-coding downstream 217187 13548254 ~ 13556657 (-)
G77294 NA non-coding downstream 217652 13555556 ~ 13556192 (-)
G77284 NA non-coding downstream 285011 13486267 ~ 13488833 (-)
G77245 NA non-coding downstream 444951 13328642 ~ 13328893 (-)
G77349 NA non-coding upstream 4659 13791321 ~ 13791934 (-)
G77347 NA non-coding upstream 13351 13800013 ~ 13800912 (-)
G77351 NA non-coding upstream 17821 13804483 ~ 13804892 (-)
G77352 NA non-coding upstream 18427 13805089 ~ 13805329 (-)
G77378 NA non-coding upstream 200273 13986935 ~ 13987166 (-)
ypel2a LOC106603438,LOC106931471,LOC106940241,LOC101067200,LOC107659943 other downstream 119431 13643184 ~ 13654413 (-)
sparta spg20,LOC107728829,LOC107589828,LOC107577790,LOC107697408 other downstream 230229 13538156 ~ 13543615 (-)
dclk1a dclk1a,dclk1,LOC107588999,LOC107728871,LOC107577778 other downstream 240780 13492273 ~ 13533064 (-)
mogat2 mogat2,LOC107751377,LOC107691703,LOC107747029,LOC107686211,LOC107589716,LOC107579037 other downstream 984749 12782353 ~ 12789095 (-)
uvrag uvrag,LOC107691651,LOC107577365,LOC107686127,LOC107751378,LOC107589407 other downstream 1004427 12678990 ~ 12769417 (-)
ovca2 ovca2,LOC107697430,LOC107743470,LOC107728834 other upstream 19442 13806104 ~ 13807819 (-)
G77440 dlg1,LOC107738847,LOC107659037 other upstream 415600 14202262 ~ 14204127 (-)
G77441 dlg1l,LOC107653521,LOC107705307,LOC107660320 other upstream 417754 14204416 ~ 14208006 (-)
G77443 NA other upstream 447844 14234506 ~ 14264322 (-)
G77465 hyou1,LOC107691632,LOC107588517,LOC107747001,LOC107693979,LOC107577052 other upstream 553384 14340046 ~ 14343012 (-)

Expression


Co-expression Network