hnrnpdl (hnrnpdl,hnrpdl,LOC107715891,LOC107702595,LOC107731491,LOC107653490)


Basic Information

Item Value
gene id hnrnpdl
gene name hnrnpdl,hnrpdl,LOC107715891,LOC107702595,LOC107731491,LOC107653490
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056708.1
NCBI id CM032077.1
chromosome length 16503406
location 3607967 ~ 3612283 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043250475.1
ATTTCGTCACTGATCTCCGTCCGCCATTTTAATCAACGCGGCACTTTATTCGTGTTGAAGTCTTTGACCTTTTAAATCCACTGTAATATAATCAGTTACGTAGCAAGCGTCGGATCAAACTAAACATACTCCAAAATGCAGGCAGAAGAGCAAGGTGACTTCAGCACCGACGAGTTTCCAGAAGGCTCCAAAATAAACGCGAGTAAAAATCAGCAGGATGACGGgAAAATGTTCATTGGTGGACTCAGTTGGGACACAAGCAAGAAAGACCTTTCTGACTACCTTTCCAAGTTTGGAGAGGTCCTCGACTGCACCATCAAAACAGACCCCATGACCGGACGCTCCAGGGGCTTCGGCTTTGTGCTCTTCAGAGATGCTGAGAGCGTTGATAAGGTGTTAGAGCTGAAGGAGCACAAGCTGGATGGGAAGTTGATTGATCCCAAAAGAGCCAAAGCCATGAAGGGCAAGGAGCCCCCCAAGAAGGTGTTTGTCGGCGGTCTGAGTCCAGACACATCTGAGGAACAAATCCGGGAGTACTTTGGAGCTTATGGAGAAATTGAAAACATTGAGCTCCCCATGGACACCAAAACAAACGAAAGGCGGGGATTTTGCTTTGTGACATACGTTTCAGAGGATCCCGTTCAACAGCTCCTGGAGAACAGATACCATCAAATTGGATCAGGAAAGTGTGAAATCAAAGTAGCCCAGCCTAAAGAAGTTTACAGACAGCAGCAGGGCAGAGCGGACCGAGGATttggaggaggacgaggaggctTCCGAGGCCGTGGAAGAGGACAGGGCCAGGGCTATAATCAAGGATACAACAACTACTACGGCCAGAACTATGGAGGCTACGGCAATGGATACAACCAGGGCTATAACGGCTATTCTGGCTATGACTATTCAGGATACAACTATCAGAATTATGGCTATGGACAAGGCTATGATGATTACAGTGGTCAACAGAGCAGCTATGGCAAGGCTTCACGGGAAAGTGGAAACCATCAGAACAGCTACCAGCCGTATTGATAAAGTGGCTAAACACATTGACGTTCATGGTAAGGTCACATCTTTGCTGCGTTCTGGGCTCGACCTCAATGTTAAAGATCAATAGACACTATCTGACAGCCTAAGGCCTACGCATATCAATGCACCCGAGTTGAAAAACACATGTCTATAGATCTTTAATCACTCACGTTTGTCTAGCCATTTTGCCTTTTTAGCGTGCCAGAAAAACGTAAGCGTTTTTCTGTAGGttttccttttcctcctcctGCTTTAACAGGTGATCATAATGGAATAACATAGAGACTTGATAGCAATGCTAACAGGTAAAGTACAGCTAAGGGGTACAGAGTAAGGGCGCCTCTCCtgatttttcctttctttccctAATTCTGATTATTGTACCTTGTTTGTACCTGCCAGCGGGGACTTCATTGCAGGCCGTGTGTCACCTGACCACGACATTCTCTGGGCGTCGCACATAGCGGGCAGAGAGCACGGCATGCACGAGAAAGCGCTGTCCTGTGGTATGGTCTCTTCAAACTTCCTGTACCAgcgtaaaacaaacaaaaagacaaaggaGATTCCCCCATTTTCCTTAAGTTGTTGGTTTTCGTTAACAGttccaaatgtgttttttccagGAATTTATTAACTTAACCTAAAAGTGATTCATAACTGCTTCATTGTTGTATTCTCTTTTTCAATTGTAGTGCTCTTGTATTTCAGTTGTGGAGCTTCAgtgaattattctttttatttctttggtttCAGTCACACCTCCCttgtataaataattgcataaacTCTCATAATGCTTGCTTTTTCTTTAGAGGCCATAGAGAACTTCAAATGGGTACACCTCAAGGCTTTTTCTTAAGCGTAGCCTTTTTAAAGATCATATGTAAAGTGGGTTTGCCAAGCCATTGAAAGCTGACAAATCTGTGGTAGACAGATGAAACCAACTCACGTATTGGCTAAATGCAAATGACAATTTTCGGTTTAAAGGGGAAGACGTTTGGGCTCGCTCCTTGATTGGTCGACCAACCGCCTGGAGCTGAAGCTTTTGCTGTTTTGTCAATCTAAGACGTCGAACATATGATCTTTAATCTTTAATGATGGTTTTCCTAGTTTAAAATCGACAGCTCAAGAAGTTAAACACTGAAACATGGacgtgctgttttttttccttttctttaacCTGTCCAAATCTGAGTCATTCATCTTGCATATCTTCTCTTGTAGGTCGGCAGGCTGACTTCGACATTGCTCCTCGGAGGCAGCTTGTGGATTCCTGTCCttaaacaactatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagttattcggTCCTGTGGGGACGAATTCAGTGTCTAACCTTGTAAATAGCGAGGCGTTTTGTTTCCAAGTTTGTCTTATTCCGTGCTTTGTTCAGATTGAACCTGTAGGTTTTGTGCTGATGTGTTCTTAAGTCTTGAATAGAAAAAGTGtcctttattttgtattttagttctTTTCCTGAAGGTTTTTGGATAAAGGGATTAAAAATTGAGAAGAAA
>XM_043250476.1
ATTTCGTCACTGATCTCCGTCCGCCATTTTAATCAACGCGGCACTTTATTCGTGTTGAAGTCTTTGACCTTTTAAATCCACTGTAATATAATCAGTTACGTAGCAAGCGTCGGATCAAACTAAACATACTCCAAAATGCAGGCAGAAGAGCAAGGTGACTTCAGCACCGACGAGTTTCCAGAAGGCTCCAAAATAAACGCGAGTAAAAATCAGCAGGATGACGGgAAAATGTTCATTGGTGGACTCAGTTGGGACACAAGCAAGAAAGACCTTTCTGACTACCTTTCCAAGTTTGGAGAGGTCCTCGACTGCACCATCAAAACAGACCCCATGACCGGACGCTCCAGGGGCTTCGGCTTTGTGCTCTTCAGAGATGCTGAGAGCGTTGATAAGGTGTTAGAGCTGAAGGAGCACAAGCTGGATGGGAAGTTGATTGATCCCAAAAGAGCCAAAGCCATGAAGGGCAAGGAGCCCCCCAAGAAGGTGTTTGTCGGCGGTCTGAGTCCAGACACATCTGAGGAACAAATCCGGGAGTACTTTGGAGCTTATGGAGAAATTGAAAACATTGAGCTCCCCATGGACACCAAAACAAACGAAAGGCGGGGATTTTGCTTTGTGACATACGTTTCAGAGGATCCCGTTCAACAGCTCCTGGAGAACAGATACCATCAAATTGGATCAGGAAAGTGTGAAATCAAAGTAGCCCAGCCTAAAGAAGTTTACAGACAGCAGCAGGGCAGAGCGGACCGAGGATttggaggaggacgaggaggctTCCGAGGCCGTGGAAGAGGACAGGGCCAGGGCTATAATCAAGGATACAACAACTACTACGGCCAGAACTATGGAGGCTACGGCAATGGATACAACCAGGGCTATAACGGCTATTCTGGCTATGACTATTCAGGATACAACTATCAGAATTATGGCTATGGACAAGGCTATGATGATTACAGTGGTCAACAGAGCAGCTATGGCAAGGCTTCACGGGAAAGTGGAAACCATCAGAACAGCTACCAGCCGTATTGATAAAGTGGCTAAACACATTGACGTTCATGGTCGGCAGGCTGACTTCGACATTGCTCCTCGGAGGCAGCTTGTGGATTCCTGTCCttaaacaactatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagttattcggTCCTGTGGGGACGAATTCAGTGTCTAACCTTGTAAATAGCGAGGCGTTTTGTTTCCAAGTTTGTCTTATTCCGTGCTTTGTTCAGATTGAACCTGTAGGTTTTGTGCTGATGTGTTCTTAAGTCTTGAATAGAAAAAGTGtcctttattttgtattttagttctTTTCCTGAAGGTTTTTGGATAAAGGGATTAAAAATTGAGAAGAAA
>XM_043250477.1
ATTTCGTCACTGATCTCCGTCCGCCATTTTAATCAACGCGGCACTTTATTCGTGTTGAAGTCTTTGACCTTTTAAATCCACTGTAATATAATCAGTTACGTAGCAAGCGTCGGATCAAACTAAACATACTCCAAAATGCAGGCAGAAGAGCAAGGTGACTTCAGCACCGACGAGTTTCCAGAAGGCTCCAAAATAAACGCGAGTAAAAATCAGCAGGATGACGGgAAAATGTTCATTGGTGGACTCAGTTGGGACACAAGCAAGAAAGACCTTTCTGACTACCTTTCCAAGTTTGGAGAGGTCCTCGACTGCACCATCAAAACAGACCCCATGACCGGACGCTCCAGGGGCTTCGGCTTTGTGCTCTTCAGAGATGCTGAGAGCGTTGATAAGGTGTTAGAGCTGAAGGAGCACAAGCTGGATGGGAAGTTGATTGATCCCAAAAGAGCCAAAGCCATGAAGGGCAAGGAGCCCCCCAAGAAGGTGTTTGTCGGCGGTCTGAGTCCAGACACATCTGAGGAACAAATCCGGGAGTACTTTGGAGCTTATGGAGAAATTGAAAACATTGAGCTCCCCATGGACACCAAAACAAACGAAAGGCGGGGATTTTGCTTTGTGACATACGTTTCAGAGGATCCCGTTCAACAGCTCCTGGAGAACAGATACCATCAAATTGGATCAGGAAAGTGTGAAATCAAAGTAGCCCAGCCTAAAGAAGTTTACAGACAGCAGCAGGGCAGAGCGGACCGAGGATttggaggaggacgaggaggctTCCGAGGCCGTGGAAGAGGACAGGGCCAGGGCTATAATCAAGGATACAACAACTACTACGGCCAGAACTATGGAGGCTACGGCAATGGATACAACCAGGGCTATAACGGCTATTCTGGCTATGACTATTCAGGATACAACTATCAGAATTATGGCTATGGACAAGGCTATGATGATTACAGTGGTCAACAGAGCAGCTATGGCAAGGCTTCACGGGAAAGTGGAAACCATCAGAACAGCTACCAGCCGTATTGATAAAGTGGCTAAACACATTGACGTTCATGCGGGGACTTCATTGCAGGCCGTGTGTCACCTGACCACGACATTCTCTGGGCGTCGCACATAGCGGGCAGAGAGCACGGCATGCACGAGAAAGCGCTGTCCTGTGGTATGGTCTCTTCAAACTTCCTGTACCAgcgtaaaacaaacaaaaagacaaaggaGATTCCCCCATTTTCCTTAAGTTGTTGGTTTTCGTTAACAGttccaaatgtgttttttccagGAATTTATTAACTTAACCTAAAAGTGATTCATAACTGCTTCATTGTTGTATTCTCTTTTTCAATTGTAGTGCTCTTGTATTTCAGTTGTGGAGCTTCAgtgaattattctttttatttctttggtttCAGTCACACCTCCCttgtataaataattgcataaacTCTCATAATGCTTGCTTTTTCTTTAGAGGCCATAGAGAACTTCAAATGGGTACACCTCAAGGCTTTTTCTTAAGCGTAGCCTTTTTAAAGATCATATGTAAAGTGGGTTTGCCAAGCCATTGAAAGCTGACAAATCTGTGGTAGACAGATGAAACCAACTCACGTATTGGCTAAATGCAAATGACAATTTTCGGTTTAAAGGGGAAGACGTTTGGGCTCGCTCCTTGATTGGTCGACCAACCGCCTGGAGCTGAAGCTTTTGCTGTTTTGTCAATCTAAGACGTCGAACATATGATCTTTAATCTTTAATGATGGTTTTCCTAGTTTAAAATCGACAGCTCAAGAAGTTAAACACTGAAACATGGacgtgctgttttttttccttttctttaacCTGTCCAAATCTGAGTCATTCATCTTGCATATCTTCTCTTGTAGGTCGGCAGGCTGACTTCGACATTGCTCCTCGGAGGCAGCTTGTGGATTCCTGTCCttaaacaactatttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagttattcggTCCTGTGGGGACGAATTCAGTGTCTAACCTTGTAAATAGCGAGGCGTTTTGTTTCCAAGTTTGTCTTATTCCGTGCTTTGTTCAGATTGAACCTGTAGGTTTTGTGCTGATGTGTTCTTAAGTCTTGAATAGAAAAAGTGtcctttattttgtattttagttctTTTCCTGAAGGTTTTTGGATAAAGGGATTAAAAATTGAGAAGAAA

Function

symbol description
hnrnpdl Predicted to enable poly(A) binding activity and poly(G) binding activity. Predicted to be involved in regulation of gene expression. Predicted to be located in cytoplasm; nucleus; and viral nucleocapsid. Predicted to be active in nucleoplasm. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 3. Orthologous to human HNRNPDL (heterogeneous nuclear ribonucleoprotein D like).

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein D-like

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13044 HNRNPABD; heterogeneous nuclear ribonucleoprotein A/B/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043250475.1 True 2569 mRNA 0.43 7 3607967 3612283
XM_043250476.1 False 1377 mRNA 0.45 8 3607967 3612283
XM_043250477.1 False 2199 mRNA 0.43 8 3607967 3612283

Neighbor

gene id symbol gene type direction distance location
mat2al mat2al,LOC107732036,LOC107653488,LOC107573852,LOC108440739,LOC100699062,LOC108276530,LOC102202437,LOC101466580 coding downstream 13146 3590267 ~ 3594821 (-)
snx30 snx30,LOC107569385,LOC107570383,LOC107732699,LOC107715846 coding downstream 21461 3574296 ~ 3586506 (-)
LOC122352385 LOC101886557 coding downstream 347352 3259677 ~ 3260615 (-)
plppr1 plppr1,LOC107702599,LOC107750956,LOC107653496,LOC107710008,LOC106568589,LOC102776600 coding downstream 391156 3167723 ~ 3216811 (-)
LOC122352946 epha5,LOC107702602,LOC108428864,LOC107709147 coding downstream 643534 2898351 ~ 2964433 (-)
tmem150c tmem150c,LOC107558260 coding upstream 5232 3617515 ~ 3625783 (-)
sec31a LOC107715884,LOC107702588 coding upstream 31786 3644069 ~ 3663881 (-)
pam pam,LOC107737006,LOC107670040,LOC107560403,LOC107715844,LOC107702561 coding upstream 231409 3843692 ~ 3879520 (-)
pdzph1 LOC107702580,LOC107670049,LOC107560411,LOC107558250,LOC107715841,LOC107706919,LOC107737152,LOC107579090 coding upstream 279359 3891642 ~ 3904123 (-)
ca9 LOC107568649,LOC107715873,LOC107670029,LOC107737123,LOC107572190,LOC107702555 coding upstream 493725 4106008 ~ 4115776 (-)
G74551 NA non-coding downstream 20073 3587435 ~ 3587894 (-)
G74533 NA non-coding downstream 74251 3309787 ~ 3533716 (-)
G74537 plppr1,LOC107750956,LOC107702599,LOC107710008,LOC107653496 non-coding downstream 152973 3450537 ~ 3454994 (-)
G74459 NA non-coding downstream 558449 3049232 ~ 3049518 (-)
G74455 NA non-coding downstream 718019 2889445 ~ 2889948 (-)
G74574 NA non-coding upstream 87322 3699605 ~ 3700769 (-)
G74614 LOC107715880,LOC107702582,LOC107558262,LOC107560412,LOC107670041,LOC107737037 non-coding upstream 167776 3780059 ~ 3834370 (-)
G74609 NA non-coding upstream 209108 3821391 ~ 3824596 (-)
G74624 NA non-coding upstream 214842 3827125 ~ 3828028 (-)
G74615 NA non-coding upstream 219319 3831602 ~ 3832092 (-)
hnrnpd LOC107702593,LOC107715890,LOC107573849 other downstream 179 3601612 ~ 3607788 (-)
LOC122353137 palm2,LOC107702598,LOC107715893,LOC107732273,LOC107653494,LOC107569382 other downstream 230183 3337339 ~ 3377784 (-)
LOC122352587 cntfr,LOC107554853,LOC107756542 other downstream 840772 2717097 ~ 2767195 (-)
LOC122352692 NA other downstream 1410538 2194085 ~ 2197429 (-)
adamts6 adamts6,LOC107744255,LOC107685101,LOC107713302 other downstream 1761065 1774223 ~ 1846902 (-)
LOC122352741 diras2,LOC107560410,LOC107736992,LOC107702570,LOC107558266,LOC107715878,LOC107670053 other upstream 293331 3905614 ~ 3912742 (-)
LOC122352369 colgalt1,LOC107672476,LOC107711180,LOC107757371,LOC107670492,LOC107567242,LOC108429625,LOC107587993 other upstream 1407024 5019307 ~ 5028513 (-)
si:ch211-113d22.2 si:ch211-113d22.2,LOC107677989,LOC107705073,LOC107586211,LOC107688532 other upstream 2925839 6538122 ~ 6540973 (-)
sprn2 LOC107578968,LOC107720715 other upstream 3016142 6628425 ~ 6631188 (-)
G75454 LOC107552069,LOC107678002,LOC107586137,LOC107687386,LOC107742371,LOC108437806 other upstream 3565041 7177324 ~ 7180821 (-)

Expression


Co-expression Network