CI01000000_18665046_18710097 (ATP10B)


Basic Information

Item Value
gene id CI01000000_18665046_18710097
gene name ATP10B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 18664585 ~ 18710111 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_18665046_18710097.mRNA
AGGGCTGAGACATCATGACCTGGACAAACCCTCTGACCCTTCTTCGGCAGGGCTGGGCGAGGCACAGGGACCGGGACAAACCCGTCAGGACGGTGGTCTCCAACCTGCCCTTTGAAGATCTAAAGAAACGTGACCAGCCGAACCGCCAGTATGAGGGCAACGCGATTAAAACCAACAAATACAGACTTTGGTCTTTCATCCCCATGAACTTATTTGAGCAGTTCCACCGTTTGGCCAACATTTATTTTGTGGGCCTGGCCATCTTGAATTTCGTCCCAGTGGTCAACGCGTTCCAACCGGAGGTGGCTCTCATTCCCATTTGTGTCATCCTGGCACTGACCGCTGTCAAGGATGGCTGGGAGGATTTCCGGAGGTACCAGAGTGACCAGCAGCTCAACAATATGCCTTGCTTCATATTCAGCAGAACTGAAGCCTTTCGGTCTTTGATACCTCAAAACTTTTTGAGCTGTCGTGGGAAGAAGAGCCTTTGGCTCCTGGACATATGTGTGGAGAGGAGAGGGGCAGTTGGTGTGGAGGAGGGATGCAGGAAGAATTGTCAGGAGTGTGGCAGGAAACAGATGTGCTTCGTGGAGAGGAGGTGGAAGGATGTACGGGTGGGGGATTTTGTGAGAGTGCTCTCTAACGAGATCATCCCAGCTGACATCCTGCTCCTGCACACGTCCGACCCTAATGGAGTGTGCCACATGGAAACAGCCAATCTGGATGGAGAGACCAACCTCAAACAGAGGAGGGTGGTGCCAGGCTTTTCTACTCTCGGTGAACCATTTCAACCTCAAACATTTGACAGTACTGTAGTGTGTGAAAACCCCAACAACAACCTCAACCTGTTCAAAGGTTATGTGGAGAGGCCTGATAAGAGGAGAACAGGCTTCGGCATCGATAGTCTTCTGCTGCGCGGGTGCACAGTGAGAAATACTGATGACGCGGCTGGAATAGTGGTGTACGCAGGACAGGAGACCAAATCCATGTTAAACAACAGCGGGCCCAGGTACAAACGCAGCAAGATTGAGAGGAAGATGAATACGGATGTTCTCTTCTGCGTGGTTCTTCTATTTTTCATGTGTCTCATCGGAGCCCTGGGCCATTCTATCTGGTTGGAAACTTTTACCACTATGCCCTCATACATCGTCCCTGACAGTAATGGAAATTACACCCCTTCAGTGTTAGCAGGATTTTACATGTTCTTCACAATGATCATCTTACTACAGGTGATGATTCCTGTGTCACTGTATGTGTCCATTGAGCTGGTGAAGATGGGGCAGATCTACTTCATCACTCAGGACGTGGAGCTTTACGATGAGGAGCTGGACAGTCGGGTCCAGTGTCGTGCTCTGAACATCACAGAGGACTTGGGACAAATCCAGTACGTCTTCTCAGATAAGACAGGGACGCTTACAGAAAACAAGATGGTATTCAAGCGCTGCACCATCATGGGGACTGAATACTGTCATGATGAGAACGCTGCTCGCTTGGCGGTTGTCAATGGAGCAAATGAGGAGGAGGTCACTATCTTCCAACAGACAAAGCTTCCTCCTCTCTTCCCTCTGGAAGAAATACAGGACTGCCACACGGGAGACAGAAATCACGCCAACACTCAAGTCACAGCTGCCAATCGACGCAGATCAAAAGTGGCGGCGGGAGCCCAAAGTGACATGGCCTTCAGCAGTCCTCTGATGGCCGAGCAGTTTGGTGTCAGTTATGAGCACAGCAATGCTGGCTCTGATCCGCTATGTTTCGATCCGTTGACATATGGGGCTGCTGGGGAAACAGTGGTGGTTCCAGACAAGAAGCTGATGCTGGAGGTGGACCGTGAGATGGCGAGCATCCAGAAGGGGCCCTACCTGGACTTCTTCCTGGCTTTGGCCATCTGCAACACAGTGGTGGTTTCTACAGTGACGGCCCAGAGACAGAGGGTCAAAGGACACCGTACCTCTGCATACTCAGGTGGTTCATTTCATAACATGGGACAGTGGTTCAGAAAGGGTTCCCTGCGGAAAGTCTTCAGCTCCATGAGATTCTTCAGGAGAGGCGAGGACACACTCGCAGATCCTTTCGCCAAAGATGAAGACGAGTCTGACATGTTTCACAGCTCAGACATCTCCGACTCAACTACAGGGCAGAAGGTCATTTCAAGTGAAAGCGAGTTTAAACGCAGGTCGGAGGAGGTGTGTTTTGAAGCCCACAGCCCAGATGAGGCCGCTCTGATACATGCAGCAAAGGCTTATGGGTTCACCATGGTGGAACGCACTCCTCATTACGTCACTGTCAAGCTGCCTGATGATTCGCTGCTGAAGTTTGAGGTGCTGGACGTCCTGACCTTCGACTCGACACGGAGGAGGATGTCCATAATAGTACGACACCCACACACCAATCAAATCATCATGTATACTAAAGGAGCTGATTCAGCCATCATGGAGAGACTGGGGAATGTGTTTTCAGATATGTCACAGGTGGGTAGTGTGGAGAAGCAAATTGCTGTAAGAACTCAAAAAGACCTCGACATGTACGCCAGGGATGGATTACGAACTCTGTGCTTTGCCAAAAAGGTTATCAGTGAAAAGGATTTCAAGGCCTGGTTTGCTATCAGACAGGAGGCGCTGGCAGCCATCGATGAGAAAGAAGAGCGTCTTATGGACACTGCAACCTACATCGAGAACAACTTCACTCTGCTGGGGGCCACTGGCATTGAGGACCGTCTCCAAGAAAATGTCCCAGAAACCATCCAGGCTCTGAGACGGGCTGGCATGCAGGTGTGGGTGCTGACAGGGGACAAACCCGAGACGGCCATCAACATCGCATACTCCTGCAAGCTGCTAGACCATGAAGACCTGGTGTTCATCTTCAGCACAAACAAGAAGTCTGTGTGTAAAATGAGGATAGAAGACACACTGGGAGAGGTGCGACGGAGTTCCCACTCACTTCAGCTGGTGATCGATGGGCCGACTCTGAGCATGGCCATGTCAGACGACCTGGTGGAGCAGTTTGTGGAGCTTTGCAAACACTGTTGTGCAGTGCTTTGCTGTAGAGTGACGCCGCTGCAGAAGAGCAGTGTGGTTAAACTCATACGGCAGAAACTGAGGGTCATGACCCTCGCTGTAGGTGACGGCGCCAATGATGTGAACATGATTCAAGCTGCAGACGTTGGCATTGGCGTTTCTGGACAGGAGGGAATGCAGGCCGTCATGGCCAGTGATTTTGCCATCACACGCTTTAAACACCTGCAAAGACTGTTGCTGGTTCACGGACACTGGTGCTACTCAAGACTGGCCAACATGGTCATCTATTTCTTCTACAAGAATGTGGCGTATGTGAATCTGCTGTTCTGGTATCAGTTCTTCTGTGGCTTCTCTGCCACCGCCATGATCGACTACTGGCTCATGATATTTTTCAACCTGTTCTTCACCTCGGCTCCTCCCATCATGTTTGGGATAATGGACAAAGAGGTGTCAGACTCCACTTTACTGAGCCTGCCTGAGCTCTATAAGAGAGGACAGCACTCGGAGGGCTACAGACGTTCAACGTTTTGGATTGCAGTTCTAGATGCTTTCTATCAGAGTCTAGTGTGCTTCTTTATTCCATACTGGAGTAATGTGTTATCTAATCACTGCTTGTACTTTCTCAAGACATACAACGGTTCAGACATCGGCATATTCTCGTTCGGCACTCCCATGAACACGGTCTCTCTGTTCACCATCATCCTGCATCTGGCCATTGAGATCAAGAGCTGGACGCCGGTGCATTGGGTGATCATGGTCGGCAGTGTGCTGGTGTACTTCATCGTGACTCTGGCCTACAGCGCCATCTGTATCAGCTGCAACCATCCCTCCGACCCCTACTGGATCATGCACAAACAAATGGCCGATCCCATGTTTTACCTCGTCTGCATTTTAACAACTGTTGTTGCTTTATTGCCAAGGTACACCTTGCATGTCCTAAGGGGAACGCTGGCACCCTCCCCTCACCTCCGCGCGCGGCAGCTAGAGCGGCTCCCCCCCTCCCATCGGGAGCAGCGGATCAGAGAGTGGCGTGGTCTCCGAGACACGTGTATTCCTCCTTCTCTCAGATCCCAGGAACACAGCTCCTCTGCCTGCCCGAGTGCATAAAGTACACACCACAGTCCGGCACATGTACAGAGAACGACAATGCCGCAAAGCTTGAATTTTTCAAACCCGTTATTTATATTTTGCACACACGGATGCGCATGCACTCCAAGGAATGAAGCTGTGCTTTTCTATTTTGAATGTGCTCTTTTGCTCCCACAAACCATTTGCATGAACTTCACATGTTTCTGCGCGGCTCAGTTCACACTTGATCAATACATGCGTGGCGTGAATGAATGTAATCTGTTGGGTGGATGATGCAGCTGAGCCTTTTCTCTTCCTGTTGTCATGTGGACCACATTTGTATGCATTTGCGCTTTGAGCTGCTCATGCAATAATTGAGGTTTGCAGATGTTACATAATATCTTGGTTCATATATTCAGAGCTTGTTGTGCATGCTGAGAGAAATACAAGCACCACAGTGCGATTGAGGAGGCTGGATCTTCTTCTTAATTCCTAATAAA

Function

symbol description
atp10b Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ATP10B (ATPase phospholipid transporting 10B (putative)).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_18665046_18710097.mRNA True 4585 mRNA 0.50 24 18664585 18710111

Neighbor

gene id symbol gene type direction distance location
CI01000000_18618397_18645425 ATP7A coding downstream 19160 18617318 ~ 18645425 (-)
CI01000000_18613274_18614596 NA coding downstream 49842 18611820 ~ 18614743 (-)
CI01000000_18605257_18608772 GDF9 coding downstream 55498 18604535 ~ 18609087 (-)
CI01000000_18599527_18602359 NUDT22 coding downstream 62118 18599102 ~ 18602467 (-)
CI01000000_18574740_18584010 SMYD5 coding downstream 80519 18573831 ~ 18584066 (-)
CI01000000_18721338_18772372 GABRB2, GABRB2L coding upstream 11164 18721275 ~ 18772672 (-)
CI01000000_18779242_18784513 GABRA6A, GABRA6 coding upstream 68849 18778960 ~ 18784513 (-)
CI01000000_18789985_18793339 CCNG1 coding upstream 79874 18789985 ~ 18793339 (-)
CI01000000_18815522_18834911 OGT, OGT.1 coding upstream 105362 18815473 ~ 18834911 (-)
CI01000000_18948340_18951635 NKX1.2LB coding upstream 238016 18948127 ~ 18951954 (-)
G12378 NA non-coding downstream 104510 18559822 ~ 18560075 (-)
G12329 NA non-coding downstream 217012 18440497 ~ 18447573 (-)
G12190 NA non-coding downstream 386061 18018668 ~ 18278524 (-)
CI01000000_18258072_18259037 NA non-coding downstream 405543 18258013 ~ 18259224 (-)
G12192 NA non-coding downstream 616028 17998935 ~ 18048557 (-)
G12397 NA non-coding upstream 97713 18807824 ~ 18811485 (-)
G12406 NA non-coding upstream 132711 18842822 ~ 18843057 (-)
G12414 NA non-coding upstream 154220 18864331 ~ 18864858 (-)
G12415 NA non-coding upstream 157740 18867851 ~ 18895992 (-)
G11107 NA other downstream 1996638 16667118 ~ 16667947 (-)
CI01000000_16354158_16360016 NA other downstream 2300038 16353959 ~ 16360213 (-)
G10672 NA other downstream 2433459 16226287 ~ 16231126 (-)
CI01000000_14200000_14436182 TENM2 other downstream 4165991 14200000 ~ 14436253 (-)
G9602 NA other downstream 4318051 14341002 ~ 14346534 (-)

Expression


Co-expression Network