CI01000000_18721338_18772372 (GABRB2, GABRB2L)


Basic Information

Item Value
gene id CI01000000_18721338_18772372
gene name GABRB2, GABRB2L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 18721275 ~ 18772672 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_18721338_18772372.mRNA
AAAACAATATTTTAACTGATCTTAAATGATCGATCATTCGTCCTGCACTCGGGGGCGTTTCCAACCTTTTGTCCAATCAAATGCTCTCTAGAGTAAGAACGTCCCTCCCCCATAACACCACCTGTTTCTGACTAACGGTCGCAAGCGGTTATTCACGTTTGTGACTTAAACTAAAGACTCCTGTTTGAATTGGAAATACACCGATTTCATTTGGTCTTTAACTGTAATATGTCATTCTCCGTTTCTCTCACAATAAATAAATCGCGAAGTAACTCTCAGGGCTCTTTATTTCGAGAGGTAATGACGAAGTTCGCTATGACTGAAACCCCTTCACCTCATTGCCTTCGCTGCACTGGCTTCAGTAAGTTGGATGTGCGCTGTCTTCATCATCACATCCAAAACCCCATCAAAACTGTTGCAATGGAGAGTATCGGAAAAACCCCACATATCATCTTGTTATGTCCGCTGATCGTGGCTGTGGCGTGCGGGCAGAGTAGCAGAGACCCGAGCAATATGCCAGTGGTCAAAGACACCGTGGACAGACTCATGAAAGGATACGACATTCGGCTGAGGCCAGATTTCGGAGGCGCTCCGGTGGCGGTAGGGATGAATATAGACATAGCCAGCATAGACATGGTATCCGAAGTAAACATGGACTACACCCTGACCATGTATTTCCAGCAAGCTTGGCGAGACAAGCGCTTGTCTTACTCTGAGATCCCTCTGAATCTAACCTTGGATAACCGCGTCGCTGACCAGCTGTGGGTGCCCGACACCTACTTCCTCAACGATAAGAAATCCTTCGTTCACGGAGTGACAGTCAAGAACCGAATGATACGCCTGCATCCCGATGGCACCGTGCTGTACGGATTAAGGATCACCACCACCGCTGCCTGTATGATGGACCTGAGGCGATACCCGCTGGATGAGCAGAACTGCACGCTGGAGATCGAGAGCTATGGCTACACTACAGATGACATCGAGTTTTACTGGCGAGGGGGAAATGGAGCCGTTACCGGGGTGGAGAGGATAGAACTGCCTCAGTTCTCCATCGTGGACTACAAACTCATCTCGAAGAACGTGGTTTTCTCCACAGGTTCGTATCCACGCCTGTCTCTGAGTTTTAAACTCAAGAGGAACATTGGTTACTTCATCCTGCAGACCTACATGCCCTCAATCCTAATCACCATCCTGTCCTGGGTATCCTTCTGGATCAACTATGATGCTTCTGCTGCCCGTGTGGCTTTAGGTATCACCACCGTGCTGACCATGACCACCATTAATACTCACTTGCGAGAGACCCTTCCCAAGATTCCCTATGTGAAAGCCATAGACATGTACCTGATGGGCTGCTTTGTCTTTGTGTTCCTGGCACTGCTGGAGTACGCCTTCGTCAATTATATCTTCTTCGGGAGAGGCCCTCAGCGGCAGAAGAAGGCGGCGGAAAAAGCCGCCACGGCCAACAATGAGAAACTCAGGCACGACCCCAACAAGGGTCAGTGGTCTTTGGAGATGTATAGCTGTATTATTTTTTCCACTGGCATAAGCTTGTTCACCAACCACAAGCTAATGGGCTTTTACCCTCAGAAACATGTGATGAAATATCCGGGAGATCGGCGCAGACTTTTGTTAGCTGTAAACAACAGACTCGAGCTCGTGGCTGGCGGAGCCTCTAGGGCTTTCCTTCTAATCTCATTGAAAGAGTTGTGTCTCTCTCTCCTGAGTGCGGCCGACCTCTGTAACAGTGCTGATTTTGTATGCTTGCAGTGGTTGGTGGGAAGTGTAGTTCAGAGAGACGATGCTCTCTATGCCAGAATGAAACAGAGGGAAATTGACGGGTATGACTCGATGTGGGATCCGATCTTTGCGGAGGATGCAGCATTAGGACTAGGCGATCAAAGACTTAAGATGACCGCCGACGATATCCGGCTGACCACAGTGGAAATGAAGAACGAAATGGGGCCGTCCGATCTGTCCAGGGGTCTGGGTGACCCACGCAGCACCATGCTAGCCTACGACAGCTCTACCCTGCAGTACCGCCGGGCGGCCATGGCTCGGCAAAACTACGGCCACAGCGCCCTGGAGCGCCACGCCACCCAGAAGAAGAGCAGGCTCAGGAGACGGGCTTCCCAGCTCAAGGTCAACATCCCAGACCTGTCCGATGTCAACTCCATCGACAAGTGGTCGAGAATGATCTTCCCCACCGTGTTTTCCTTCTTCAACGTAGTTTACTGGCTTTACTACGTTCATTAAAAAGATCCGATGAGCTAAACGGACCAAAAAAGAAAACAAAGAAGAGTAAAAAAAGAGAATAAA

Function

symbol description
gabrb2 Contributes to GABA-gated chloride ion channel activity. Involved in gamma-aminobutyric acid signaling pathway and inhibitory synapse assembly. Located in plasma membrane. Implicated in autistic disorder and developmental and epileptic encephalopathy 92.

GO:

id name namespace
GO:1902711 GABA-A receptor complex cellular_component

KEGG:

id description
K05181 GABRB; gamma-aminobutyric acid receptor subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_18721338_18772372.mRNA True 2316 mRNA 0.50 11 18721275 18772672

Neighbor

gene id symbol gene type direction distance location
CI01000000_18665046_18710097 ATP10B coding downstream 11164 18664585 ~ 18710111 (-)
CI01000000_18618397_18645425 ATP7A coding downstream 75850 18617318 ~ 18645425 (-)
CI01000000_18613274_18614596 NA coding downstream 106532 18611820 ~ 18614743 (-)
CI01000000_18605257_18608772 GDF9 coding downstream 112188 18604535 ~ 18609087 (-)
CI01000000_18599527_18602359 NUDT22 coding downstream 118808 18599102 ~ 18602467 (-)
CI01000000_18779242_18784513 GABRA6A, GABRA6 coding upstream 6288 18778960 ~ 18784513 (-)
CI01000000_18789985_18793339 CCNG1 coding upstream 17313 18789985 ~ 18793339 (-)
CI01000000_18815522_18834911 OGT, OGT.1 coding upstream 42801 18815473 ~ 18834911 (-)
CI01000000_18948340_18951635 NKX1.2LB coding upstream 175455 18948127 ~ 18951954 (-)
CI01000000_19057376_19068807 NA coding upstream 284619 19057291 ~ 19068807 (-)
G12378 NA non-coding downstream 161200 18559822 ~ 18560075 (-)
G12329 NA non-coding downstream 273702 18440497 ~ 18447573 (-)
G12190 NA non-coding downstream 442751 18018668 ~ 18278524 (-)
CI01000000_18258072_18259037 NA non-coding downstream 462233 18258013 ~ 18259224 (-)
G12192 NA non-coding downstream 672718 17998935 ~ 18048557 (-)
G12397 NA non-coding upstream 35152 18807824 ~ 18811485 (-)
G12406 NA non-coding upstream 70150 18842822 ~ 18843057 (-)
G12414 NA non-coding upstream 91659 18864331 ~ 18864858 (-)
G12415 NA non-coding upstream 95179 18867851 ~ 18895992 (-)
G11107 NA other downstream 2053328 16667118 ~ 16667947 (-)
CI01000000_16354158_16360016 NA other downstream 2356728 16353959 ~ 16360213 (-)
G10672 NA other downstream 2490149 16226287 ~ 16231126 (-)
CI01000000_14200000_14436182 TENM2 other downstream 4222681 14200000 ~ 14436253 (-)
G9602 NA other downstream 4374741 14341002 ~ 14346534 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014314 gabrb3,LOC107673538 coding CM030128.1 CM030128.1 8795228 ~ 8824532 (+)