G111508


Basic Information

Item Value
gene id G111508
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11487682 ~ 11488827 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU164633
TGAATTcatgacaatttaaaatactttggTAATTCCATCCAAAGAAACAATGGAGCAAAGCTAATTGTCGGACCTGAAAACCCCTTATGtaaatctagaacactgtctaacacttgatgctataaaaaatatgtgggtaatacattatatatttatcttttgtttaaattaatgtgTATTTTCTATGTatgatgtatatttaaattaacttGCAGGTTCACCACCTAATCGAGAAAGGCGTTGTGGGATCCTTAGGCATGTATCCAGGCCAGGGTCTCAGAATAACATGAGAGTTAGCCGGCCTGAACACAAGGTACTCTTTGCTTCACTGCAAATGCTTGCTGGTCCCTAACCCTGCCTAGCAGACAGAAACTTAACTTTACTGACTCCAGCGGTTCAAAAGGACCGCTCTGAAGCCCAGCCAGGACAACAGAGAGGTCCCATGAGAGCACTACGGGTGACCTAGAAGGATTTAACTTTCTGGCGCCCCCTCAGGAACCTCACAAGGAGATTGTGCTTTCCCAAACACTGGGCATCTACTGCATCGTAATGAGCTGCAATAGCAGCCACATACACTACATGCTCCAACCTCTCTGTTCTATACATCTTATATCTAATGGggatttttttctatttcaatttgCATTGCTGAGATGTTTTAATTGCTCCTGTAATACATCTTAGTGCTCGTGCGTGAATAACATCTACTAGCTGACGCAgatctatatataatacatcCATAATCTAGAACAGTTCATAGAAGTGCACAGTATAACATTTGTCATGGTGTGGTTGTAGAGAAGGAGCGCTAGACGAGAATATAACGTAAATAGTCTTTTAATTTTCTATgattgaaataaacaatatagttgcaggcaggcaggcagaacaaaaaccacatgtataaacacacaggaaataaatacacaaagtaattgactaaattaacaagacatacctaaagacaatgatacaattaacagatgaatggaaggtagggcacacagagcacatgggacaaacaaaacaacaacaaagagtccaaagaTGTGACAACATGATAATTGATTGTTTATTTGCCCCCCATTATTGGCCTACTATATACAGTATCTCATTAGATTGAGTACTttattacacttattttaa

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU164633 True 1146 lncRNA 0.38 1 11487682 11488827

Neighbor

gene id symbol gene type direction distance location
LOC122360214 LOC107752837,LOC107662667,LOC107581612 coding downstream 34173 11437373 ~ 11453509 (-)
LOC122361032 LOC107746978,LOC107684223,LOC107551206,LOC107704083,LOC107751909,LOC107601659 coding downstream 664493 10817891 ~ 10823189 (-)
LOC122361028 cabz01093075.1,LOC107601667,LOC107751875,LOC107746976,LOC107704092,LOC107684228,LOC107551204 coding downstream 676665 10808337 ~ 10811017 (-)
colec10 LOC107738939,LOC107574455,LOC107677951 coding downstream 899964 10571751 ~ 10587718 (-)
mal2 mal2,LOC107757438,LOC107571097,LOC107738940,LOC107677950,LOC107683116 coding downstream 917885 10553160 ~ 10569797 (-)
LOC122360822 LOC107596715 coding upstream 4272 11493099 ~ 11501213 (-)
skap2 skap2,LOC107743153,LOC107684555,LOC107685583 coding upstream 109504 11598331 ~ 11614258 (-)
hoxa2b hoxa2b,LOC107685611,LOC107684556,LOC107550809,LOC107743221,LOC107744722,LOC107596758 coding upstream 130686 11619513 ~ 11630905 (-)
hoxa9b hoxa9b,LOC107743222,LOC107684557,LOC107744723,LOC107685612,LOC107550810,LOC107596757 coding upstream 140272 11629099 ~ 11633344 (-)
hoxa10b hoxa10b,LOC107685613,LOC107743223,LOC107550811,LOC107744724,LOC107684558 coding upstream 144663 11633490 ~ 11636603 (-)
LOC122360676 NA non-coding downstream 6455 11480106 ~ 11481227 (-)
G111453 NA non-coding downstream 220857 11266596 ~ 11266825 (-)
G111452 NA non-coding downstream 221468 11266003 ~ 11266214 (-)
LOC122360619 NA non-coding downstream 223444 11261627 ~ 11264238 (-)
G111437 NA non-coding downstream 226634 11260745 ~ 11261048 (-)
G111516 NA non-coding upstream 55089 11543916 ~ 11544332 (-)
LOC122361126 NA non-coding upstream 74051 11562878 ~ 11569737 (-)
G111559 NA non-coding upstream 174091 11662918 ~ 11666274 (-)
G111623 NA non-coding upstream 285092 11773919 ~ 11774181 (-)
G111625 NA non-coding upstream 291960 11780787 ~ 11781172 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 75905 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 100689 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 201250 11269620 ~ 11286432 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other downstream 604258 10857520 ~ 10883424 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other downstream 723377 10745576 ~ 10764305 (-)
LOC122361049 c16h2orf66,LOC107743229 other upstream 376853 11865680 ~ 11867315 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other upstream 874958 12363785 ~ 12378449 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 2165233 13654060 ~ 13683909 (-)
G112478 NA other upstream 2745727 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 3009436 14498263 ~ 14503136 (-)

Expression


Co-expression Network