zgc:92606 (zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344)


Basic Information

Item Value
gene id zgc:92606
gene name zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 13654060 ~ 13683909 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU165859
GGGCGATTGGTTGGTGAAGACTTGGAGTTCTGACTTTTACTGATGGAGGCTAGAGCCTGTCTGGCTTTTTCCCATTCTGGGTTCTCATGGACTTGGCTGTCTCCGCTTGAATTACTACCATACGGCCTGTGGACGACAAGtggGAGAAGTGGGCCAGTCGACATCTTCAACATAGAAGGCGTTTTATAATAAGTAAGTAATTGAATTTTGTAGATCATCTCCATTACTGCGCTGATCCGGCCATCTGATATTCGTCCAAGTGAGGAAGACGGGTGTTGTGTTTCACTTCTCGAATCCATCAGCAGCCAACCGAGATGTCTAGCCAGTATCAGCGAAGTGTTCCACTGGAGGTCAGGAGAGCGGAAGGGGAGAGGGTCCGTGCCAAACATCCGGATAAAATCCCGATAATAGTGGAGAGAGCTGCGAGGTCTCGAGCTCCTGAGCTTGATAAAAAGAAATACCTCGTTCCTTCAGACCTCACAGTCGGTCAGCTCTGCTTCCTGATCAGACAGCGGGTGTCTATGAGACCAGAAGAAGCGCtcttcttttttgttaaaaattccCTCCCTCCATCCAGTTCCCCCCTGTCTGCAGTGTATGAGGAACACCACGAGGAAGACCTGTTCCTGTACATGACATACAGTAATGAGAGTGTTTACGGTGCTTGAGGCGGAGGACTAAAGGActgggcagagagagagagagagagagaaagatgacaCATTATTTTACCAATATTATCCCATATTCAATACATTGTACCTAGAGAGGACATTGTTTATAATAGGGACTAATGGGTGCTGTTTGTATTTATCAGTATTTGGGGGAAACTACAGTGAAATTCATTGAACAGATTGCTGGCAGTAAATGGAACGAGAAAATGGAaggtcaaaaacaaaaatagagataaataaaaaaatattagcaaagTAAGCAAGTATTAATCTCATCTTTCTCTCCCAGGAGCGcatcatttgtatttaatgcaaatagttttttttcttgtttttctttcttttttgtaaagtaTTATCAATTTGTGCATATAATAAACACCTTTAAAAACTaaaaaaaaaaaaaa
>XM_043260978.1
GGtactttatttgttgttgttttagtggGAGAAGTGGGCCAGTCGACATCTTCAACATAGAAGGCGTTTTATAATAAGTAAGTAATTGAATTTTGTAGATCATCTCCATTACTGCGCTGATCCGGCCATCTGATATTCGTCCAAGTGAGGAAGACGGGTGTTGTGTTTCACTTCTCGAATCCATCAGCAGCCAACCGAGATGTCTAGCCAGTATCAGCGAAGTGTTCCACTGGAGGTCAGGAGAGCGGAAGGGGAGAGGGTCCGTGCCAAACATCCGGATAAAATCCCGATAATAGTGGAGAGAGCTGCGAGGTCTCGAGCTCCTGAGCTTGATAAAAAGAAATACCTCGTTCCTTCAGACCTCACAGTCGGTCAGCTCTGCTTCCTGATCAGACAGCGGGTGTCTATGAGACCAGAAGAAGCGCtcttcttttttgttaaaaattccCTCCCTCCATCCAGTTCCCCCCTGTCTGCAGTGTATGAGGAACACCACGAGGAAGACCTGTTCCTGTACATGACATACAGTAATGAGAGTGTTTACGGTGCTTGAGGCGGAGGACTAAAGGActgggcagagagagagagagagagagaaagatgacaCATTATTTTACCAATATTATCCCATATTCAATACATTGTACCTAGAGAGGACATTGTTTATAATAGGGACTAATGGGTGCTGTTTGTATTTATCAGTATTTGGGGGAAACTACAGTGAAATTCATTGAACAGATTGCTGGCAGTAAATGGAACGAGAAAATGGAaggtcaaaaacaaaaatagagataaataaaaaaatattagcaaagTAAGCAAGTATTAATCTCATCTTTCTCTCCCAGGAGCGcatcatttgtatttaatgcaaatagttttttttcttgtttttctttcttttttgtaaagtaTTATCAATTTGTGCATATAATAAACACCTTTAAAAACTTTA

Function

symbol description
zgc:92606 Predicted to enable GABA receptor binding activity and ubiquitin protein ligase binding activity. Predicted to be involved in autophagosome assembly; autophagy of mitochondrion; and cellular response to nitrogen starvation. Predicted to act upstream of or within autophagy. Predicted to be located in membrane. Predicted to be active in autophagosome membrane and cytosol. Orthologous to several human genes including GABARAP (GABA type A receptor-associated protein).

NR:

description
PREDICTED: gamma-aminobutyric acid receptor-associated protein-like 1-like isoform X2

GO:

id name namespace
GO:0006914 autophagy biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU165859 True 1081 TUCP 0.42 7 13654060 13683909
XM_043260978.1 False 955 mRNA 0.41 5 13678540 13681984

Neighbor

gene id symbol gene type direction distance location
rasip1 rasip1,LOC107549479,LOC107724795,LOC107744292,LOC107598383 coding downstream 49319 13592032 ~ 13604741 (-)
il11a NA coding downstream 80465 13565402 ~ 13573595 (-)
znf628 LOC107724809,LOC107549478,LOC107744293,LOC107598382,LOC107672962,LOC107692578 coding downstream 89833 13556250 ~ 13564227 (-)
nat14 nat14,LOC107724968,LOC107549449,LOC107744294,LOC107692586,LOC107672977,LOC107598397 coding downstream 98097 13552540 ~ 13555963 (-)
aicda aicda,LOC107549448,LOC107692585,LOC107724977,LOC107744312,LOC107598400,LOC107672983 coding downstream 105748 13546280 ~ 13548312 (-)
tpi1b tpi1,tpi1b,LOC107672981,LOC107724698,LOC107700200,LOC107744284 coding upstream 10850 13694759 ~ 13701743 (-)
gnb3a gnb3a,LOC107549492,LOC107672997,LOC108432288,LOC103042898,LOC102782474 coding upstream 69505 13753414 ~ 13760343 (-)
p3h3 p3h3,LOC107700158,LOC107724912 coding upstream 80095 13764004 ~ 13770786 (-)
cxcr3.3 NA coding upstream 151611 13835520 ~ 13838704 (-)
cxcr3.2 LOC107700152,LOC107551671,LOC107717417,LOC107598452,LOC107671173,LOC107755594 coding upstream 157399 13841308 ~ 13844368 (-)
G112377 NA non-coding downstream 34724 13618687 ~ 13619336 (-)
G112361 NA non-coding downstream 44726 13606631 ~ 13609334 (-)
G112350 NA non-coding downstream 110749 13534721 ~ 13543311 (-)
G112327 NA non-coding downstream 182374 13449507 ~ 13471686 (-)
G112339 NA non-coding downstream 192335 13455557 ~ 13461725 (-)
G112363 leng8,LOC107724921,LOC107700201,LOC107744285,LOC107672965,LOC107549486,LOC107598384 non-coding upstream 4597 13688506 ~ 13693963 (-)
LOC122360145 NA non-coding upstream 29951 13713860 ~ 13789086 (-)
G112410 clstn3,LOC107744281,LOC107724674,LOC107700197,LOC102784285 non-coding upstream 49279 13733188 ~ 13734148 (-)
G112369 NA non-coding upstream 93360 13777269 ~ 13778805 (-)
G112426 NA non-coding upstream 101106 13785015 ~ 13786453 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 1275611 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 1786745 11865680 ~ 11867315 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 2242283 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 2267067 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 2367628 11269620 ~ 11286432 (-)
G112478 NA other upstream 550645 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 814354 14498263 ~ 14503136 (-)
LOC122359961 riiad1 other upstream 898570 14582479 ~ 14587869 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 1215273 14899182 ~ 14904907 (-)
LOC122359907 LOC107594909 other upstream 1224711 14908620 ~ 14913646 (-)

Expression


Co-expression Network