LOC122359961 (riiad1)


Basic Information

Item Value
gene id LOC122359961
gene name riiad1
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 14582479 ~ 14587869 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU166339
TGACGCCGGCGCAGAGACGCAGAGATGGCGGAGAGAAACACTCTGGAAAAAGTCGATTTGGGCGCTTTAAGTCCAGAGCAGCAGGAGAAGCTGCATCAGTTTAAGGTCAAGACACGGATagctaatgaaaaatatttaacgaCTCATCCGGAGGTGGAAATGTTACTGAGCGGCTTCTTAAGGGGTGTGTTTCTAAACAGGCCTACAGATATTCGTGAATTTGCCGCAGATCACTTCTGCGACCCAGGATTGCCAAGGAAAATTCAGGAGCAAATGAATATgcagaaaaagtgaaaaaagtggatagtgttttgtaataaaagagagaaaaaaattgaa
>TU166340
TGACGCCGGCGCAGAGACGCAGAGATGGCGGAGAGAAACACTCTGGAAAAAGTCGATTTGGGCGCTTTAAGTCCAGAGCAGCAGGAGAAGCTGCATCAGTTTAAGGTCAAGACACGGATagctaatgaaaaatatttaacgaCTCATCCGGAGGTGGAAATGTTACTGAGCGGCTTCTTAAGGGGTGTGTTTCTAAACAGGCCTACAGATATTCGTGAATTTGCCGCAGGTAAATAGATCACTTCTGCGACCCAGGATTGCCAAGGAAAATTCAGGAGCAAATGAATATgcagaaaaagtgaaaaaagtggatagtgttttgtaataaaagagagaaaaaaattgaa
>TU166341
CTCGAACGTCGTGCGGACGGGAGGCGTGCACTCCAGCTGGGGACTTAGCTGGGCACGCGCTTGGCGATACACTTTCATTCAGCCAAAGCCGCTAATGCAGCAACATCATGCGTTCCGCGATATCATTTCTTGCCTTTTTTTCGTGCGTTTCACTCGTCGAGATAAAGTCACTCCAAGCAGGTGAAACGTGTGTCGGTATCCGGAGAGAAGACTCATCCTATGACTTCGAGCTTCCTGACGCTGTAGCCGTGAACGCGCAGGACCCCGCGTGCGACGCGGAGTGGACCCTTGATGTAAATATCTCTAAAAAGGCCACGATTAACttgaactttttaaatatgagaaTGTTATGTATTTCCCTGTGcgataaattacttttatttaatgtaatttaatgttattttatgtgttatttAACCACAAGAGGTCACTATCGTCGTAGTTTTGTGAtgtgttctttttaaaatggcCACTATAACACCAAGTGGCCATTAGGTTTCATGTTCTATGCATTACATCAAAATGTTCCATAATATGCGATAACTGCCATCTagatttgatttagattataCCACTAGTTTAATATGAgccattttctgtgttttgtgttaccATTTGtcactgttaaaaatgttttgttttgtcttgtacTAGACATTAgtgaaaacaagcaaaatgtaAAGTTGTGAAAGTTTTACCATGATTACTAAATGTCTCACATTTCTCTACTAGCAATTCACTGCAATCCTAGATAGAAGGATTGCTCACTTTTCTCATCCCTTCAAAAACGTAACTAATCGAGGAATAAGTGTGACTTACTGTGCAGCTTTAGTCAAATGCCACATCTCTTGTCCAACGTATACCAATCACCTCACATGTTCTTgcacaAATTTCACCAGCAATCCAGTTCTTAACACAAAGCTGCCAGATATGTCTTCTGATGCCAACAATAGTGATTCATCAGTGAGGCAACACTATTGTGCCGTTGCTGTTGCTGCCACTTTTGCTCTAAGCCTAGTCATTTTGGCTGTCCTTATCTGCAGGACACAACAgCAATGCAAAATATGATCCTACAAGAGACTGAggtttcaagatgtgctgttcaagctcttttgaaaAAGAAGGCTGGAGAGCAGTACCataatgagtgtctgcaggcaacagtgaagcatggtggaggttccttAAACGTTTCGGActctcaatgctgagaaatacaggcagacACTTATCCATCGTGCAGTACCTTCAGGGAGGCGGGACAACTaccccaaacatacagccataatcattaagaactatcttcagtttaaagaagaagaagaagtactggaagtgatggcatggcgACCACAGAGCCCTGATTTCAACATCATTGAGTGTGTCTGGGActacatgaagagacagaaggatgtgagaaagcctacatTCACAGAGGATCTGTGGTTAGTCctccaagatgtttggaacaacctgcCAGtcgagttccttcaaaaactgccAAGTGCacctagaagaattgctgctgttttgaaggcaagGGTGGTCACTAGatttgattttagatttttgattagttttaattaaatcattatttatatttctggaagcatttgtttacagcattttgtcacacctgcctaaaacttttgcacagtactgtatatgttcaaaaaatgtttatattaataatgataatatatacataaataaaaatctaaacataacCGTACATATTCTATaggttaaatataataataaaatgtataaattatgatGAAGGCAGTGACGTATGAGCACACAGGCTGAATACAAATGATCAGAATTGATAGACAACTTGGCTATATCAGGGAAAATACATCTACATAGTCCTTCGCAGAgaaagggaaaataaaaaaacatcactttcAGGCAATAAGTTCATAATCCTGTGAAACTTTTTAATGTTGGTATTAATTTCACCATCGCCAACAACGCAACTGACTCAGTATAGTTTCCATGACctgaaatgtattatataaaaacatcgAGGCAATATATGGAATATGGTTTAAATATGGTTTCATTGAATGCGACCGTTAATATACATAATGTAggataatacaaaataaacaatttactTTGTATTTTCTCCCAGAATGTATAATAGCTCCCTGGCTGTCACATGTTACTGTTTTTCACATAGTTACGACATGATGTTACTGTGTCTACAAAGTGTAATGGTAAAGCTCATGTTGCAAGTTGTTTAAATCTTGCTTATCTTAATCTTAATCTTGTTTTATAGAGactttcttgtttatttttacggTTTTCCATCCTTGTAGCTCTTATTTAATCCTTGTGTTATAGGATGTAAGTTACtttgaaacatttctttgaATTGACGATAACgactctttcttctttctgtatAGATATATAGCTAAGTAATATCGTTAAAATGAATCTCACTTACCGGTGAGCACCAGCTTCGCGCGctatctgtgtctgtttgtaGTTTAGATTCTCAACGGCTCCGTGCTGTCATCTGTTCCCATGGGTTATATGaggaaataaacatttcatcatAAATTATAGGCTATAATCCATCGTAGCTCACTGAGACGTGAGCCCATAAACGCAGATATTTATGACTGATGTATTCATGTTTGCATAAAACTCCTGTATAACGTTAAACACAATCTAGTTTGAACATCGCGTTAGCAAAAATTCTAGTAATGTGAAAGCtgatacaataataattaaaaaaaaattgtgaatttgaTGTTATGAACATAAATGTACCCGAGCgacttttttataaaatgtgtgcatACGGAAGCGTACGTTTGTTGCTTAGCAACTGAATGCGTGACGCACGTCAACATCAGGTGCTTAGTGACGCCGGCGCAGAGACGCAGAGATGGCGGAGAGAAACACTCTGGAAAAAGTCGATTTGGGCGCTTTAAGTCCAGAGCAGCAGGAGAAGCTGCATCAGTTTAAGGTCAAGACACGGATagctaatgaaaaatatttaacgaCTCATCCGGAGGTGGAAATGTTACTGAGCGGCTTCTTAAGGGGTGTGTTTCTAAACAGGCCTACAGATATTCGTGAATTTGCCGCAGATCACTTCTGCGACCCAGGATTGCCAAGGAAAATTCAGGAGCAAATGAATATgcagaaaaagtgaaaaaagtggatagtgttttgtaataaaagagagaaaaaaattgaa
>XM_043260209.1
ACTGAATGCGTGACGCACGTCAACATCAGGTGCTTAGTGACGCCGGCGCAGAGACGCAGAGATGGCGGAGAGAAACACTCTGGAAAAAGTCGATTTGGGCGCTTTAAGTCCAGAGCAGCAGGAGAAGCTGCATCAGTTTAAGGTCAAGACACGGATagctaatgaaaaatatttaacgaCTCATCCGGAGGTGGAAATGTTACTGAGCGGCTTCTTAAGGGGTGTGTTTCTAAACAGGCCTACAGATATTCGTGAATTTGCCGCAGATCACTTCTGCGACCCAGGATTGCCAAGGAAAATTCAGGAGCAAATGAATATgcagaaaaagtgaaaaaagtggatagtgttttgtaataaaagagagaaaaaaattgaa
>XM_043260210.1
ACTGAATGCGTGACGCACGTCAACATCAGGTGCTTAGTGACGCCGGCGCAGAGACGCAGAGATGGCGGAGAGAAACACTCTGGAAAAAGTCGATTTGGGCGCTTTAAGTCCAGAGCAGCAGGAGAAGCTGCATCAGTTTAAGGTCAAGACACGGATagctaatgaaaaatatttaacgaCTCATCCGGAGGTGGAAATGTTACTGAGCGGCTTCTTAAGGCCTACAGATATTCGTGAATTTGCCGCAGATCACTTCTGCGACCCAGGATTGCCAAGGAAAATTCAGGAGCAAATGAATATgcagaaaaagtgaaaaaagtggatagtgttttgtaataaaagagagaaaaaaattgaa

Function

symbol description
riiad1 Orthologous to human RIIAD1 (regulatory subunit of type II PKA R-subunit domain containing 1).

NR:

description
PREDICTED: RIIa domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU166339 False 339 lncRNA 0.43 4 14582479 14583312
TU166340 False 347 lncRNA 0.43 4 14582479 14583312
TU166341 True 3217 lncRNA 0.38 10 14582479 14587869
XM_043260209.1 False 376 mRNA 0.44 4 14582479 14583349
XM_043260210.1 False 358 mRNA 0.44 4 14582479 14583349

Neighbor

gene id symbol gene type direction distance location
otoa otoa,LOC107700136,LOC107717411,LOC107671168 coding downstream 1237 14568314 ~ 14581242 (-)
setdb1b LOC107573682,LOC107717459,LOC107582057,LOC107671207,LOC107723461,LOC107700161 coding downstream 25414 14544847 ~ 14557065 (-)
LOC122360165 NA coding downstream 37737 14540215 ~ 14544742 (-)
LOC122360164 NA coding downstream 49404 14526845 ~ 14533075 (-)
LOC122360169 NA coding downstream 58363 14518061 ~ 14524116 (-)
il6r LOC107667704 coding upstream 56019 14643888 ~ 14650892 (-)
atp8b2 atp8b2,LOC107677029,LOC107714674,LOC107667702 coding upstream 63704 14651573 ~ 14677758 (-)
aqp10a aqp10a,LOC107673770,LOC107714675,LOC107596410 coding upstream 94959 14682828 ~ 14688168 (-)
si:dkey-92i15.4 LOC107714676,LOC107673754,LOC107594846,LOC107577098 coding upstream 99862 14687731 ~ 14697088 (-)
tuft1a LOC107582063,LOC107723549,LOC107714678,LOC107673742,LOC107594884 coding upstream 114029 14701898 ~ 14714966 (-)
G112612 NA non-coding downstream 254276 14327952 ~ 14328203 (-)
G112483 NA non-coding downstream 278944 14303124 ~ 14303535 (-)
G112479 NA non-coding downstream 285907 14292739 ~ 14296572 (-)
G112474 NA non-coding downstream 371540 14210693 ~ 14210939 (-)
G112473 NA non-coding downstream 371946 14208396 ~ 14210533 (-)
G112659 NA non-coding upstream 3493 14591362 ~ 14654150 (-)
LOC122359963 NA non-coding upstream 45345 14633214 ~ 14638332 (-)
G112686 NA non-coding upstream 127347 14715216 ~ 14715491 (-)
G113034 NA non-coding upstream 304171 14892040 ~ 14892395 (-)
G113039 NA non-coding upstream 358726 14946595 ~ 14947384 (-)
dicp3.3 NA other downstream 79343 14498263 ~ 14503136 (-)
G112478 NA other downstream 280860 14234554 ~ 14301619 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other downstream 898570 13654060 ~ 13683909 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other downstream 2204030 12363785 ~ 12378449 (-)
LOC122361049 c16h2orf66,LOC107743229 other downstream 2715164 11865680 ~ 11867315 (-)
si:ch211-105c13.3 si:ch211-105c13.3,LOC107673711,LOC107594941,LOC107582067,LOC107677027,LOC107735771 other upstream 311313 14899182 ~ 14904907 (-)
LOC122359907 LOC107594909 other upstream 320751 14908620 ~ 14913646 (-)
si:dkey-246i14.3 si:dkey-246i14.3,efna4,LOC107595001,LOC107714708,LOC107723547,LOC107677033,LOC107582070,LOC108269281 other upstream 382672 14970541 ~ 15015462 (-)
rps27.2 rps27.2,LOC107699547,LOC107582081,LOC106605923,LOC108429942,LOC107589412,LOC106598061 other upstream 714005 15301874 ~ 15306611 (-)
LOC122360651 LOC107596174,LOC107714662,LOC107714661 other upstream 777319 15365188 ~ 15375304 (-)

Expression


Co-expression Network