G116212 (LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252)


Basic Information

Item Value
gene id G116212
gene name LOC107588526,LOC107755659,LOC107700712,LOC107704880,LOC107705924,LOC108433590,LOC103032252
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 25079267 ~ 25082596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU171572
CTCCCCCTTGGTGTGAGGCTTATATGCTTGAATCGGAAACGTTGCATACGAGAGTAGCAAGCgcggtgtgttggtgtgtgtcaCTACTTCCTTTTCAGCTGCAAGCCCCAGATCAAGAGGCTCAGGAGAGCACGAGATAGGAAACCTCTAGGCATTTTCTCATCTTTGCTGGACTGCTCATTTTGACTGACATGTCGAACCCAGTCATCACTCAGCCTGGGGCTGGATCTTACGGTACAAATGTGCAGACTGGAGAGTGGAGCACTGGTCTTTGTTCTTGCTGCAGTGACCTACTTGTCTGTGGTCTTGGCTTCATCTGTCCGATAGCTCTCAGCTGTTACACAGCGAACAAGTACGGTGAAAATTTATGTCTAGCTTGTGTACCAGGAGGAATGGCTGCAATGAGGACACACATGCGACTGACCTATGGAATACAGGGCACAATATGCAATGATGCTTTGATGACCTGTTGCTGTGGAATATTTGAAACCTGTAGAATGGCCAGAGAAATTCGTATCAGGAATGGAGAGGCCTAATTACTGCCTTCACTAATAACTGTTTCAGtcttaaaattgaaaaaatatatatttttataaaataaatatattttttattgaaataaaggCAGGAGGTATTGTTAAAAGCAGGATAATTACAACCAAGTTACAATTAATAAACGTACATTCTTTGGAAATAAAAAGCTTGACCCATACTGTTTAGTCAACAGTGTTACGTTATTGTAAAAGTTTTGAGTTTGCGTAAATTCTTATGTTCAATAATGCATTGTTTGTGGTGACATTTTTGCTGTAATGCTCAAAATGTGCTGCTAACCTGCAGCATTAATATGTAACTGTACAGAAGGTGTgtgtcatatatttaataatagccGCCAAACACAGTACAGTGTAAATCGTAGCCTACctaatcatattaaaataacgCAATTGTTTACGCCATTtgctgattaaataaatggtttgcattgtttttgtattgtttcaCAAACAACCATACTTTCACGTCAACACATGAAATATAGCCGAGACGTATTACGTCATCGGCGCGCAGCAGTACGAGcccctctgattggctgttgttGGCGGTGACCTGGCAACCGTGCGAGGGTTTACAGACGCTTATTTATTCTGCAGGATCTTCGGAAAGCGCAGGTCGCGTCTTTTTACTGACAACCTGTAATTGCTTCCCGATACTAGCTGCTCTTCATCCGTCTCCAGAGAGGATGTCGACGCGAACGCTGCCTCTGCTCTTCATTAATTTGGGCGGAGAAATGCTCTACATCCTGGATCAGCGCCTGCGGGCTCAGAATATCCCGGCAGATAAAGCTAAGAAAGGTAGATGGCAGCTAATATGCATCGGAGTTGATGAAGCAAGTCGTTTAAGCGTTGTCTTTAGGATCATAGTTTATGATCTTTCTAAAGAAGCCGTTGGGTTATCTGCTATTGCTGTCCATTATTAGCCAGTTAGCCTGTGTTTGAATACAGTGATCCAGTGGCCCAGTTCAGTTACAGCAGGaaacatgtcatttttgtaACGTTATGTCGTTCTTTGTAGGCAACATTATTTAAGGCCAGACACTACaaacattgttgttgttttgttgttttttcacgCCCTGTCCAGGTTTTAGATTTTTGTCTATTTGCCTTTCGTAATGTCTCGTTTCAGACTGGTGGAAGGAAAAAATTCAAATCcaaatttaatacatattttaaaacctgaaaCGAAAATCTTTTAGTTATATAGGCCTACTTAAGAGGGTATAAAGTGCTCAGATTTCTGTCctgtacatttatgtaaatcAGTGCATctttaataaatgttcattttcacattcaaaCGTAAACTTTCAGAAAATTTGGGAAAGTATGGTGATATTTTTCACCAGTGTTTACCTTAAACGAGCAATAGTATTTTATTCATGCAGTAGATTGTccattaaaacatatatttgaaatgtaaaaatatgagtCATTGCATTAGAATCAGATGTAGTCATTAAAATTATAGCACAAGCACACTTTTCTAacaaaaaatgctacaaaaatgtggctttaaataaaaaaaatgttattcaaaatgtactgagaaaaaaattaagtttctGTAATTTTCTGCCAGGATATTATGCAGTAATTTTACTTTAACTCTAAAACACA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171572 True 2177 lncRNA 0.38 4 25079267 25082596

Neighbor

gene id symbol gene type direction distance location
stk40 stk40,LOC107704982,LOC107755633,LOC107588492,LOC107705547 coding downstream 8042 25053698 ~ 25071225 (-)
eva1ba eva1ba,LOC107700680,LOC107556086,LOC107734091 coding downstream 45926 25020716 ~ 25033341 (-)
LOC122360137 LOC107755513,LOC107705663,LOC107556091,LOC107704976,LOC107588498 coding downstream 172746 24892846 ~ 24906521 (-)
ctps1b ctps1,ctps1b,LOC107704971,LOC108433599,LOC108415321 coding downstream 233114 24839929 ~ 24846153 (-)
taf12 taf12,LOC107566933,LOC107588503,LOC107755488,LOC107700725,LOC107705731 coding downstream 239480 24836086 ~ 24839787 (-)
mrps15 LOC107705916,LOC107704881,LOC107700664,LOC107756143,LOC107556076,LOC107588515 coding upstream 317 25082913 ~ 25089706 (-)
capn7 capn7,LOC107705521,LOC107755679 coding upstream 24802 25107398 ~ 25118453 (-)
pik3r4 pik3r4,LOC107556101,LOC107755706,LOC107588487,LOC107705468 coding upstream 79167 25161763 ~ 25172461 (-)
calb1 calb1,LOC107704882,LOC107588486,LOC107700706 coding upstream 97234 25179830 ~ 25190749 (-)
pnp4b pnp4b,LOC107704990,LOC107700705,LOC107705461,LOC107755717,LOC107588484,LOC108437351 coding upstream 111805 25194401 ~ 25200900 (-)
G116164 LOC107588518,LOC107755478,LOC107700723,LOC107588502,LOC107705715,LOC107704972,LOC107566931 non-coding downstream 243903 24835099 ~ 24835364 (-)
G116179 rab42 non-coding downstream 245309 24833536 ~ 24833958 (-)
G116174 NA non-coding downstream 255857 24821501 ~ 24823410 (-)
G115954 NA non-coding downstream 890673 24187937 ~ 24188594 (-)
G115939 NA non-coding downstream 1001400 24077631 ~ 24077867 (-)
G116242 NA non-coding upstream 94856 25177452 ~ 25178607 (-)
G116237 NA non-coding upstream 128797 25211393 ~ 25558018 (-)
G116264 NA non-coding upstream 611513 25694109 ~ 25695357 (-)
G116247 LOC107568872,LOC107688200,LOC107728981,LOC107592106,LOC107707640,LOC107671434 non-coding upstream 622104 25704700 ~ 25706796 (-)
G116282 NA non-coding upstream 694140 25776736 ~ 25778404 (-)
serinc2l serinc2l,LOC107587884,LOC107704843,LOC107732828,LOC107755451,LOC107597105 other downstream 605902 24414226 ~ 24473365 (-)
LOC122359997 LOC107732827,LOC107704842,LOC107587847,LOC107700682,LOC107756122,LOC107597135 other downstream 709701 24364640 ~ 24369566 (-)
phactr4b phactr4b,LOC107587745,LOC107597106,LOC107700669 other downstream 739479 24317482 ~ 24339788 (-)
mchr2a mchr2,si:dkey-165n16.5,LOC107587893,LOC107597140,LOC107700674,LOC107716821,LOC107711724 other downstream 1403922 23668065 ~ 23675345 (-)
usp45 usp45,LOC107716853,LOC107587766,LOC107711747,LOC107552817,LOC107704836 other downstream 1469426 23582993 ~ 23609841 (-)
LOC122361130 LOC107568872,LOC107728981,LOC107671434,LOC107592106,LOC107707640,LOC107688200 other upstream 582123 25664719 ~ 25710686 (-)
G116604 slc9a1,LOC107688187,LOC107564092 other upstream 1297076 26379672 ~ 26384187 (-)
LOC122360302 man1c1,LOC107713850,LOC107564091,LOC107665908,LOC107729795,LOC108426368,LOC101882461,LOC107601975 other upstream 1339122 26421718 ~ 26507052 (-)
G116654 myom3,LOC107659064,LOC107729819 other upstream 1724524 26807120 ~ 26809146 (-)
G116632 fabp10a,LOC107677662,LOC103026354 other upstream 1727721 26810317 ~ 26812974 (-)

Expression


Co-expression Network