pmvk (pmvk,LOC107551729,LOC107717898,LOC107735019,LOC107661023,LOC107714427,LOC107697277)


Basic Information

Item Value
gene id pmvk
gene name pmvk,LOC107551729,LOC107717898,LOC107735019,LOC107661023,LOC107714427,LOC107697277
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 1545287 ~ 1549931 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260624.1
CCGTTCCTGTTTAAACAGAAGCGTACTAAACGTGTGTCAGTGTCGTATGTGTGCGTCGAAGGCTTCGTAAACATGACATCTACACAACCAAGGATCATTCTTTTATTCAGTGGGAAGCGTAAATCAGGGAAGGACTATGTGACAGATTTGATACAGAAAAGACTGACAGCTGAGATGTGCTGTATACTCAGACTGTCCGCACCTCTCAAACATCAGTTTGCTAAGGATCACAATCTTGACTACGAGGAGCTGTTGGGTTCTGGTCAGTATAAGGAGAGTTATCGCGCAGACATGATCCGCTGGGGTGAGATGAAGAGACAGCAGGACTCCGGCTTCTTCTGTAGACTGGCCATCAAACGTGCCACACAGCCCTTTTGGATGATCAGCGATTGCAGAAGGAAGTCAGACGTGCAGTGGTTCCGTGAAGAGTTTCCTGATAGATGCGTCTGCGTCCGTGTGGAGGCTTCTGAGCAGACGAGATCGCAGAGGGGCTGGAGATTCACCACAGGTGTAGACGATGCCGAGTCCGAGTGCGGTTTGGATGAAGGCGTGAAGTTTGACTATATCGTTAGGAACGATGGAGCCGATGACGTTCTGGAGAAACATCTGGAGGATCTACTGTCTTTGATCAAGTCGCAGGAGAAGGAATCAGACACACGAAATGACATCAAACATCAATAACATTTTTGCCTTCATATCCTGCTCACTGGAGAACACGCAAacggtttttgtaacaaaaaggATCATTCTTTGCCTTGATTTTATACGCATAGAATTATTTATGAacgatgatttaaaaaaaaaagtatgttctattgcaatattaatgtattaattaaacaaattgcattttcattctttaATCACTGAGGGGTGAAAGAACTGTGACCGTTCGGTCCGTCTAGTTCTTTGATGGTTTTAcggaaatgttaaaaaaaaaaaaaatatcgtaATATCGTAACATTTAACATAAACTACACAAGAAATGCAACGAATCAGTTatcaatgcatttatatagGTGACGAAATACATGATTACAGccatatatttaaacacacggTACAatgaaaaatcaataaaaaatacaatatataaagaaTGA
>XM_043260625.1
AGTGGGAAGCGTAAATCAGGGAAGGACTATGTGACAGATTTGATACAGAAAAGACTGACAGCTGAGATGTGCTGTATACTCAGACTGTCCGCACCTCTCAAACATCAGTTTGCTAAGGAACTTTGATGTGGAGGCTGAAGCATGAGAATGAGCGTCATCCCGCGTGAAGAATTTCCCCCTCCCGTGGTTTGGAATGTAATGGACGGCACGAATGTCTTGATACCTCAGGATCACAATCTTGACTACGAGGAGCTGTTGGGTTCTGGTCAGTATAAGGAGAGTTATCGCGCAGACATGATCCGCTGGGGTGAGATGAAGAGACAGCAGGACTCCGGCTTCTTCTGTAGACTGGCCATCAAACGTGCCACACAGCCCTTTTGGATGATCAGCGATTGCAGAAGGAAGTCAGACGTGCAGTGGTTCCGTGAAGAGTTTCCTGATAGATGCGTCTGCGTCCGTGTGGAGGCTTCTGAGCAGACGAGATCGCAGAGGGGCTGGAGATTCACCACAGGTGTAGACGATGCCGAGTCCGAGTGCGGTTTGGATGAAGGCGTGAAGTTTGACTATATCGTTAGGAACGATGGAGCCGATGACGTTCTGGAGAAACATCTGGAGGATCTACTGTCTTTGATCAAGTCGCAGGAGAAGGAATCAGACACACGAAATGACATCAAACATCAATAACATTTTTGCCTTCATATCCTGCTCACTGGAGAACACGCAAacggtttttgtaacaaaaaggATCATTCTTTGCCTTGATTTTATACGCATAGAATTATTTATGAacgatgatttaaaaaaaaaagtatgttctattgcaatattaatgtattaattaaacaaattgcattttcattctttaATCACTGAGGGGTGAAAGAACTGTGACCGTTCGGTCCGTCTAGTTCTTTGATGGTTTTAcggaaatgttaaaaaaaaaaaaaatatcgtaATATCGTAACATTTAACATAAACTACACAAGAAATGCAACGAATCAGTTatcaatgcatttatatagGTGACGAAATACATGATTACAGccatatatttaaacacacggTACAatgaaaaatcaataaaaaatacaatatataaagaaTGA

Function

symbol description
pmvk Predicted to enable phosphomevalonate kinase activity. Predicted to be involved in cholesterol biosynthetic process and isopentenyl diphosphate biosynthetic process, mevalonate pathway. Predicted to act upstream of or within cholesterol metabolic process; phosphorylation; and sterol biosynthetic process. Predicted to be located in cytosol. Human ortholog(s) of this gene implicated in porokeratosis. Orthologous to human PMVK (phosphomevalonate kinase).

NR:

description
PREDICTED: phosphomevalonate kinase

GO:

id name namespace
GO:0006695 cholesterol biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004631 phosphomevalonate kinase activity molecular_function

KEGG:

id description
K13273 PMVK; phosphomevalonate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260624.1 False 1103 mRNA 0.41 5 1545287 1549931
XM_043260625.1 True 1106 mRNA 0.42 6 1545287 1549823

Neighbor

gene id symbol gene type direction distance location
LOC122359849 mbp,LOC107661001,LOC107551742,LOC107697274 coding downstream 34853 1496586 ~ 1510434 (-)
LOC122361052 foxo1b,LOC107686122,LOC107746988,LOC107588742,LOC107577289,LOC107691691 coding downstream 252974 1282311 ~ 1292313 (-)
LOC122361256 NA coding downstream 1250302 294867 ~ 294985 (-)
LOC122361163 NA coding downstream 1266813 278356 ~ 278474 (-)
LOC122361151 NA coding downstream 1267208 277961 ~ 278079 (-)
si:ch73-341k19.1 LOC107551746 coding upstream 98436 1648367 ~ 1654527 (-)
nt5c3a LOC107714420,LOC107661006,LOC107551731,LOC107697280,LOC107720166,LOC107581689 coding upstream 106617 1656548 ~ 1662627 (-)
foxo6a LOC107714419,LOC107551733,LOC107661026,LOC107720174,LOC107697267,LOC107581751 coding upstream 134973 1684904 ~ 1704721 (-)
med18 med18,LOC107714426,LOC107661027,LOC107697268,LOC107720175 coding upstream 168104 1718035 ~ 1720115 (-)
LOC122360634 prdm1,prdm1a,LOC107661008,LOC107551748,LOC107697283,LOC107581686 coding upstream 450850 2000781 ~ 2010666 (-)
G109425 LOC107714432,LOC107661002,LOC107551745,LOC107717891,LOC107697276,LOC107581694 non-coding downstream 2991 1528093 ~ 1542296 (-)
G109430 NA non-coding downstream 23802 1521283 ~ 1521485 (-)
G109320 NA non-coding downstream 219353 1325620 ~ 1325934 (-)
G109316 NA non-coding downstream 264032 1280870 ~ 1281255 (-)
G109308 zmp:0000001073,LOC107713869,LOC107692477,LOC107566287,LOC107564399 non-coding downstream 349458 1113743 ~ 1195829 (-)
G109439 NA non-coding upstream 86485 1636416 ~ 1636997 (-)
G109440 NA non-coding upstream 90846 1640777 ~ 1641312 (-)
G109441 bmper,LOC107661004,LOC107697278,LOC107551747,LOC107720165 non-coding upstream 92699 1642630 ~ 1643043 (-)
G109442 bmper,LOC107551747,LOC107697278,LOC107720165,LOC107661004 non-coding upstream 93942 1643873 ~ 1644173 (-)
G109444 bmper,LOC107661004,LOC107551747,LOC107697278,LOC107720165 non-coding upstream 95683 1645614 ~ 1646149 (-)
G109287 NA other downstream 662535 882459 ~ 882752 (-)
G109275 NA other downstream 912390 632465 ~ 632897 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other upstream 191189 1741120 ~ 1964161 (-)
G109600 NA other upstream 1563911 3113842 ~ 3129979 (-)
G109724 LOC107084717,LOC106511825 other upstream 2544826 4094757 ~ 4095504 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 3682280 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 4232736 5782667 ~ 5790534 (-)

Expression


Co-expression Network