hacl1 (hacl1,LOC107743162,LOC107685543,LOC107745383,LOC107684560)


Basic Information

Item Value
gene id hacl1
gene name hacl1,LOC107743162,LOC107685543,LOC107745383,LOC107684560
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 11855021 ~ 11865183 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043260858.1
GAGCGGCAGGAGGACAGAAGAGCACCAGACgatcagttgtgtgtgtgtgaagtgaatGTGTTGTGAAGGTGATTATGGATGAAGTGACTGGAGCTCAGCTGATCGCTGAGGCGCTCAGATCTCAGAATGTGGAGTACATGTTTGGCATTGTTGGTGTGCCTATCATCGAGGTGGCCATGGCCGCCCAAGCAGCAGGCATCAAGTATGTTGGCATGCGCAATGAACAAgcaGCCTGCTATGCTGCATCTGCTATTGGGTATTTGACAGGACGGCCAGCCGTGTGTCTGGTTGTGTCTGGACCTGGGCTGATCCATGCGCTCGGAGGAATGGCCAACGCTAACGTGAACTGCTGGCCTGTCATTGTCGTTGGCGGCTCGTCTGATAGGAACCAAGAAACTACAGGAGCGTTTCAGGAGTTCCCTCAGGTTGAAGCTTGTCGTCTGTATAGCAAGTTTTCTGCTCGACCAAGCAGCCTTCAGATGATACCAGCCGTAGtcgaaaaaGCTGTAAGGAGCAGCATTTATGGCCGTCCAGGAGCGTCCTACATAGACATAGCCGGAGACATGGTGAACGACAAAATAGACCGGGCCAATGTCAGGTTTGTTTCCTGCTGCCCTGCTCCTCCCGTGAGTCAGGCTGACAGCAGAGAGATCACACGGGCCGTCAGTCTGCTCAAAACGGCTCAGAGGCCTCTGATCATCATCGGCAAAGGCGCGGCTTATTCCAGGGCAGAGAAGGAGGTCAGGGAGCTGGTGGAGGCCACTGGGATCCCTTTCCTTCCCACGCCTATGGGGAAGGGAGTACTGCCGGATGACCACCCTAACTGCGTCGCTGCGGCCAGGTCCAGAGCTTTATTGCAGGCTGATGTTATAGTGTTGCTGGGTGCCAGACTCAACTGGATCCTGCATTTTGGTTTTCCACCCAGATTCAGTCCCCATGTGAAGATCATTCAGGTGGATCTGTGTGCTGAAGAGTTGAGTAATAATGTGAGAGCTGCATCTGCTCTACTTGGAGACATAGGAGCCGTGGTCAGGCAGCTGTTGGAAAGCGTCAGATCTTGGAGATTTCCTTCAGATTCACAATGGTGGTCGACACTGAAGGAGAAAATGACTGCCAATGCTCAGATATCAAAGGCTCTTGCTCTCCAGTCCACTCTTCCCATGAACTACTACACAGCGTTCCACCACATTTCTGAGCTGCTGCCCAAAGACTGCATCATAGTTAGTGAGGGAGCGAATACTATGGACATAGGCCGCACCATGCTGCTCAATCATCTCCCACGACACAGGTTAGATGCTGGTACTTTTGGCACTATGGGAGTGGGTCCGGGATTTGCCATCGCAGCAGCGTTGTTGGAGCAGACACAGAAGAGTGCTCAGAGAGTGGTGTGTATCGAAGGAGACAGCGCCTTCGGTTTCTCTGGCATGGAGGTGGAGACCATGTGCAGGTATAAACTGCCAGTCATCATCATAGTAATCAACAACAATGGCATTTACAGTGGAGTGGATCCAAAGACATGGAAAGAGATGGAAAAGATGGGAGACATGACCACCATtgctcCTCCGGTGACGCTGCTGCCAGAGGCACGGTACGAGCAGGTGATGAGTGCGTTTGGGGGTCGTGGGTATCTGGTCCGAACGGTGGAGGAACTCCGCAGTGCACTACAGGAAAGTCTGAACAACACGCAGATTCCCAGCCTCCTCAATGTACTCATAGACCCGGCTTCAGACCGCAAACAACAGGAGTTTCCCTGGCTGACACGTTCAAATCTGTAGAGCCGAGAGAGATATCAGATGAGATCGGATCATGTCATGATGACCAACTCTTGTTTCTTTCAATACACTTGGTTAGCTTACTGTAGGTGGCACCATTTCCTATAAAAAGAAAGGCTGTGCCATTGTACACTTAGATCTTAAATCTCTACTGACTGAAGTTAATTTCTATAGAAAGAACTGGAATCTATAAGTACCTAAAAGGAAACATcccttaaaaataatatgtctGGAATCAATATTTCTTTGTTTCAAACCTTTTGAAGTAGATTTTCATGTGCATTTTAACAACAGTTCATAGGATGCCTCAGGAATACTtggtatatttaaatacatttatttcatacgcATAGGCATACTTCAACTTGTATACAATGccctttttttataataagtttaaatgtgttttaatgtcactaatGATGAGGATTGTATGATCTTTGATTAATATCGGTCTTTAAATCCAAGATAAAGTATACTTGCTAGTTTCACTTTAGAATAGTAAAATACTTTAGTATATCTTTACCTGGACCTTAGCACTACAtctgcacaattaaagtgcattaagcacaaaattagtTGTTCCAGTTCAGCAGACTTTAATTATACCAGTTTAGTATATTAACACCTTtttttcacagacagggcttaaaGCCTAATGCCAGACTAAATTATAAGCTTGAGCTGTTTCAACTCAAAGAAACTCTCTTtgactgatataaaaatatatcagtgcaTTTCTCAAAATGCACACCTGGCTTAGTCTAAGCTTGTTTGTGAAGCCAGGCCTAAAAGTACAAATTTGTAGtatacttagcatgaaataaatatttcagataaatgtatttttcactgtgggAACGCATGTGGCCATGTCTCTCAAACTCCGCAAAAAAGTATTAAAGAAGCACCATGAAAATTACTTTAGTAACTGTTAGCAGAATATGGGGCACAAATCATAGAAcgtaattattcatatatatatatatatatatatatatatatatatatataatataaacaatttatcATTACTGTGCTGCTTTAGCACAGAGCAAGAGAGCGTCTTTTCCTTGGCTTTGACAGATCACAGCGTCTTTACATTTCCAGGTGTGGAAATGTTCCCAACAACTTTACATCTTTCAAAAGACTTATTAAAagagcctcttttttttttttatggccaAAAGCAAAAAGCAGCCAAAAGTTGTTTaagtttgttttgtaattaaagtttttttaatcattgtacacaaacaaaaatggccTTACTTGCTGTGTGTTATTGTATaaagaattgtaatttttaatagcgctttaacaaatatttttctaataactTCACAATTAATGTAATTTGATGTCCTTTGAAAGATTATGTTTCAAGGGGAAGTGATGGACAATTAAAATGCGCTTCATAAGA

Function

symbol description
hacl1 Predicted to enable thiamine pyrophosphate binding activity. Predicted to be involved in fatty acid alpha-oxidation. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be active in peroxisome. Orthologous to human HACL1 (2-hydroxyacyl-CoA lyase 1).

NR:

description
PREDICTED: 2-hydroxyacyl-CoA lyase 1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K12261 HACL1; 2-hydroxyacyl-CoA lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043260858.1 True 3195 mRNA 0.43 17 11855021 11865183

Neighbor

gene id symbol gene type direction distance location
colq colq,LOC107743227,LOC107745382,LOC107684559,LOC107685587 coding downstream 27 11839901 ~ 11854994 (-)
fkbp14 fkbp14,LOC107596753,LOC107743226,LOC107685615,LOC107550815,LOC107745381 coding downstream 31470 11820787 ~ 11823551 (-)
cpvl cpvl,LOC107743225,LOC107684544,LOC107745375,LOC107550833,LOC107685540,LOC107596754 coding downstream 75041 11774974 ~ 11779980 (-)
jazf1b jazf1,LOC572950,LOC107743157,LOC108441515,LOC107684540,LOC107550831,LOC107685586 coding downstream 150193 11687295 ~ 11704828 (-)
hibadhb hibadhb,hibadh,LOC107685537,LOC107550829,LOC107744697,LOC107743154,LOC107684541,LOC108441516 coding downstream 192789 11653213 ~ 11662232 (-)
ankrd28b ankrd44,ankrd28b,LOC107685545,LOC107745379,LOC107550837,LOC107596646,LOC107684548 coding upstream 4015 11869198 ~ 11885649 (-)
twist1b twist1b,twist1,LOC107684561,LOC107596643,LOC107728521,LOC107550839 coding upstream 120451 11985634 ~ 11987450 (-)
tmem196b tmem196b,LOC107596721,LOC107685588,LOC107728522,LOC107684562,LOC107550817 coding upstream 134387 11999570 ~ 12000907 (-)
macc1 LOC107743168,LOC107685548,LOC107596642,LOC107728525,LOC107684550,LOC107550840 coding upstream 142274 12007457 ~ 12012944 (-)
sp8b sp8b,LOC107685617,LOC107596752,LOC107728520,LOC107743231,LOC107684564,LOC101158882 coding upstream 170724 12035907 ~ 12040947 (-)
G111639 NA non-coding downstream 35243 11818459 ~ 11819778 (-)
LOC122360397 NA non-coding downstream 70687 11783695 ~ 11784334 (-)
G111625 NA non-coding downstream 73849 11780787 ~ 11781172 (-)
G111623 NA non-coding downstream 80840 11773919 ~ 11774181 (-)
G111559 NA non-coding downstream 188747 11662918 ~ 11666274 (-)
G111661 NA non-coding upstream 77181 11942364 ~ 11943955 (-)
G111668 NA non-coding upstream 118196 11983379 ~ 11983646 (-)
G111680 NA non-coding upstream 167410 12032593 ~ 12035126 (-)
G111688 NA non-coding upstream 210414 12075597 ~ 12076159 (-)
G111689 NA non-coding upstream 211270 12076453 ~ 12077007 (-)
G111490 si:dkey-12j5.1,LOC107738871,LOC107549224,LOC107689883,LOC107717803,LOC108256403,LOC108426361,LOC107593733 other downstream 443244 11410678 ~ 11411777 (-)
LOC122360600 enpp2,LOC107757440,LOC107745056,LOC107697648,LOC107574906,LOC107681346 other downstream 468028 11333175 ~ 11386993 (-)
G111450 mal2,LOC107757438,LOC107571097,LOC107677950,LOC107738940 other downstream 568589 11269620 ~ 11286432 (-)
LOC122360812 cobl,LOC107746964,LOC107684220,LOC107551210 other downstream 971597 10857520 ~ 10883424 (-)
LOC122361037 cables1,LOC107708521,LOC107747516,LOC107681774,LOC107691165 other downstream 1090716 10745576 ~ 10764305 (-)
LOC122361049 c16h2orf66,LOC107743229 other upstream 497 11865680 ~ 11867315 (-)
rxrbb rxrbb,rxrba,LOC107596638,LOC107581542,LOC107752838,LOC107743171,LOC107566635 other upstream 498602 12363785 ~ 12378449 (-)
zgc:92606 zgc:92606,LOC107724707,LOC107549485,LOC107598403,LOC107672985,LOC107744286,LOC108432344 other upstream 1788877 13654060 ~ 13683909 (-)
G112478 NA other upstream 2369371 14234554 ~ 14301619 (-)
dicp3.3 NA other upstream 2633080 14498263 ~ 14503136 (-)

Expression


Co-expression Network