lars2 (lars2,LOC107598928)


Basic Information

Item Value
gene id lars2
gene name lars2,LOC107598928
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056714.1
NCBI id CM032083.1
chromosome length 28146790
location 4929158 ~ 4972573 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043261291.1
tttgaGTTATTTGAACAACATGGCGGCGCCCTTGTAGCGGTGTGAATCTGTCAGATGAGCGTATTAATGCGGCACCAAAATTAAGccgtgaatgaataaataatatcgATGACAGTGAACGGATCGCAGCACGTCTGCACAGGTCCCGTTGTTTGTCGTAGTCATGCCTCTGGCTGTGTGTCTGCGGAGGCCGCTGCTCGGCGGCCGTCTGCTCCGGCTCGGCGTCCGGAGTCTGTTCAGTGAGTCGGGGATCTGGGAGCGTGATTATAAGGCAGAGACGCGGAGGCGGGTGGAGCAGTGGTGGCACGGACGCATCCAGGAGCAGTGCCAGAGAGACGCGGAGGATCAGGGCTCCAGGAAGAAGTTCTACGTCCTCTCCATGTTCCCGTACCCGTCAGGTCGGCTGCACATGGGACATGTGAGGGTCTACACCATTAGCGACACCATCAGCCACTTCCAGAGGATGAGGGGCCATCGGGTGTTGAACCCGATGGGCTGGGATGCGTTTGGTCTCCCGGCGGAGAACGCCGCCATCGAACGCGGCCTGGACCCCGAGGACTGGACCAAAAGTAACATCGAGTCCATGCGGAAGCAGCTAGACGCTCTGGGGCTCTGCTTTAACTGGGATCGGGAGGTCACTACGTGTCTGCCCGATTATTATAAGTGGACTCAGTATCTGTTCGTCAAGCTGTTCGAGGCGGGACTGGCCTATCAGAAAGAGGCGCTGGTGAACTGGGACCCGGTGGATCAGACGGTGCTGGCGGACGAGCAGGTGGATGAGAGCGGCCGCTCGTGGAGGTCTGGAGCTGCTGTGGAGCAGAAGATGCTGAAACAGTGGTTCATCAGAACCACCAGCTATGCCAAGCCTCTTCTAGATGCTTTGGCAGATCTCCCCGAGTGGTATGGAGTCAAAAGCATGCAGGCCAACTGGATCGGCGACTGCTCAGGCTGCTTTTTCAACCACGTATTGAAGGTGGATGGCCGCGACTCGGGGGAGGTGTTGTCTGCGTACACTAGATCTCCGGAGGCCGTGTTCGGGGCGGCGTATGTCTCCGTCCTGCCCTCTCACCGGCTGCTGAGCGGCTCCGGTGCCCTTAAAACAGCCCTCCTCAGAGCCCTGAGACCCGGCACggACAGCCTGACCGAGGTCACGGCCCTCAACGTGTTCACCGGCCGCGAGGTTCCAGTGCTGATCTCCGGCAAGAATGAGTTCGATGGACATCTGGACACTGtgatagGCATTCCAGAAAGCAGCGAGGAGGACGCAGAGCTGGCTCGGTCTCTGGGTTTGAGCTGGACCTCTGTTCTGAAGACAGAAGAAGACGGGACGCAGACTCTGATAAACTCAGCTGAGTTCACAGGTCAAAGCCGGGCGGAAGCTTTCGACTCTGTTACCCAGAAAGCCCGGGAGAAGAACGCCGGTGGATACCTCACTAGTGCCAAGTTACGCGATTGGCTGATCTCGAGGCAGCGCTACTGGGGCACACCCATTCCCATAGTGCACTGCGGCGCCTGCGGGCCGGTGCCAGTCCCGGAGGAGGAGCTGCCAGTCACGCTACCTAAAGTACCGCCCCTCACAGGGAAAGGGGCGACGCCCTTAAAGACAGCACAGGATTGGCTGAAATGCCAGTGTCCGAgGTGTAAAGGGCCGGCGGAGAGAGAAACGGACACCATGGACACCTTTGTGGATTCCTCCTGGTACTATTTCAGATACACCGACCCTCAGAACCCGCTGAGGCCCTTCGAGCGCTCTCAGGCGGACCACTGGATGCCTGTGGATGTTTATATCGGAGGGAAGGAGCACGCCGTCATGCACCTGTACTACGCGCGCTTCTTCAGCCACTTCTGCAGAGACCAGGGCATGGTTTCTCACAGGGAGCCCTTCAGAAAGCTGCTGGTCCAGGGTCTGATAAAGGGACAGACGTTCAGGGTGGCAGAGACCGGCCATTACCTCAAGAAAGAGGACGTCGACTTcacggGTCCGGAGCCCGTCCAGAGGGACAGCGGCAGCCGACTGCAGGTCACGTGGGAGAAGATGAGCAAATCCAAACACAACGGGCTGGACCCGCAGGAGGTGCTGCAGCAGTACGGAGTGGACACCACCCGCCTCTACCTCCTGTACACCGCTCCACCCGAACAGGACATCTTATGGGACGTCAAGActgatGCCATCCCAGGCGTGTTGCGATGGCAGACCCGTCTCTGGGGTTTGGTCAGCAGACTGAGAGCCGCGCGTGAGGGTCCAGAGACGCCCAACCCATCCATCCTCAACAAGAGAGAGCGATCAGAGGCCAGGAAGATCTGGGAGAACAAGAACCACACCGTCACACAGGTCACAGGTCACTTCACAGAGGACTTCCTgtttaatgcagccatctcttGGCTCATGGGCCTGACCAACACACTCTCACAAGCCTCGTCTCGGGTGGTTCTGCACAGCGAGGAGTTTGAGGAGGCTCTGGCTTCGCTCTGTGTGATGGCGGCACCCATGTGTCCGCACTTAGCTTCTGAACTCTGGGCAGGTTTGTCTCAGGTGAGGAATCCTCTAGGAAGTGTGCTGTCTGGGAAGGGAAGTGTCCTTCAGCAGCCGTGGCCTAGCGTGGATCCAGAGTACCTACAAACACCCGACACGCTTCAGCTGTCCGTACGgATCAATAATAAGCCGTGAGGGCGTATAACCGTACCTCGAGAAGTGGCTCAGGACGCGCAGAAGGTTGAGGAACTGGTGCTGAACAGCCCTCTGGGGGCCCGTCTGCTCTCCGAGCGTGTCATTAAGAAGGCCATCCTCTCGCCCAGAACGGCCCTCATCAACTTCCTGGTGGACGAATGAGCAAACACACAAGAGTCAAATGGACAAACTCTCTAGGGGTTCTGATTTCAGAAAGGACCGCGCGTGAAAGAGCCCGATGTCCACAGAGCTGCGATTTTTGAAAAGGGAGGAAATCAGAACTTGGCGTACGGagatattattttacaaataataaataaataaagatttccCGAttctaatatgca

Function

symbol description
lars2 Predicted to enable leucine-tRNA ligase activity. Predicted to be involved in leucyl-tRNA aminoacylation and mitochondrial translation. Predicted to act upstream of or within tRNA aminoacylation for protein translation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in Perrault syndrome. Orthologous to human LARS2 (leucyl-tRNA synthetase 2, mitochondrial).

NR:

description
probable leucine--tRNA ligase, mitochondrial

GO:

id name namespace
GO:0006429 leucyl-tRNA aminoacylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004823 leucine-tRNA ligase activity molecular_function
GO:0002161 aminoacyl-tRNA editing activity molecular_function

KEGG:

id description
K01869 LARS, leuS; leucyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043261291.1 True 3015 mRNA 0.57 21 4929158 4972573

Neighbor

gene id symbol gene type direction distance location
limd1a LOC107703922,LOC107744601,LOC107598949,LOC106579350,LOC107732724,LOC107688969,LOC107756905,LOC106605519,LOC107562399 coding downstream 147 4905857 ~ 4929011 (-)
smpdl3b smpdl3b,LOC107744599,LOC107703919,LOC107732739,LOC107688972 coding downstream 35051 4889483 ~ 4894107 (-)
LOC122360926 LOC107598923,LOC107756920,LOC107732735,LOC107660307,LOC107565651 coding downstream 129333 4795810 ~ 4799825 (-)
LOC122360932 grik3,LOC100334689,LOC105019312,LOC106605119,LOC102778608 coding downstream 315141 4511974 ~ 4614017 (-)
LOC122360353 LOC107713904,LOC107689171,LOC107559021,LOC107688989 coding downstream 685816 4203681 ~ 4243342 (-)
clec3ba LOC107562407,LOC107732738,LOC107756909,LOC107689022,LOC107703910,LOC107576254 coding upstream 18405 4990978 ~ 4995038 (-)
fez2a fez2,LOC107756910,LOC107703924 coding upstream 22600 4995173 ~ 5004441 (-)
wdr26a LOC107598934,LOC107756916,LOC107562420,LOC107688974,LOC107732721,LOC108270098 coding upstream 40004 5012577 ~ 5025324 (-)
adcy3a adcy3,adcy3a,LOC107688975,LOC107703925 coding upstream 54597 5027170 ~ 5046883 (-)
lyplal1 lyplal1,LOC797125 coding upstream 117938 5090511 ~ 5095595 (-)
G109836 NA non-coding downstream 64479 4864417 ~ 4864679 (-)
G109825 NA non-coding downstream 68127 4860248 ~ 4861031 (-)
G109824 NA non-coding downstream 70760 4855654 ~ 4858398 (-)
G109820 NA non-coding downstream 106472 4821555 ~ 4822686 (-)
G109819 NA non-coding downstream 109422 4818807 ~ 4819736 (-)
G109887 NA non-coding upstream 116328 5088901 ~ 5089304 (-)
G109891 NA non-coding upstream 204758 5177331 ~ 5177535 (-)
G109906 NA non-coding upstream 217777 5190350 ~ 5190705 (-)
G109907 NA non-coding upstream 218208 5190781 ~ 5191350 (-)
LOC122359853 NA non-coding upstream 226218 5198791 ~ 5207419 (-)
G109724 LOC107084717,LOC106511825 other downstream 833654 4094757 ~ 4095504 (-)
G109600 NA other downstream 1799179 3113842 ~ 3129979 (-)
prdm1a prdm1,prdm1a,LOC107714407,LOC107697283,LOC107551748,LOC107661008,LOC107581686 other downstream 2964997 1741120 ~ 1964161 (-)
G109287 NA other downstream 4046406 882459 ~ 882752 (-)
G109275 NA other downstream 4296261 632465 ~ 632897 (-)
vegfaa vegfa,vegfaa,LOC107703930,LOC107559057,LOC107725277,LOC107688978,LOC106605015 other upstream 259638 5232211 ~ 5245558 (-)
si:dkey-283b15.2 si:dkey-283b15.2,si:dkey-14o18.2,LOC107688992,LOC107559040,LOC107558638,LOC108410647 other upstream 810094 5782667 ~ 5790534 (-)
ndufa3 ndufa3,LOC107558639,LOC107713918,LOC107559056,LOC107726249 other upstream 844467 5817040 ~ 5818618 (-)
LOC122359839 LOC107689176,LOC107726242,LOC107689019,LOC107559018,LOC107559017,LOC107558630,LOC107713911 other upstream 930004 5902577 ~ 6184133 (-)
G110208 adamts16,LOC107757336,LOC107558631,LOC107689003,LOC107726256,LOC107657842,LOC568792 other upstream 1056635 6029208 ~ 6034777 (-)

Expression


Co-expression Network