G12190


Basic Information

Item Value
gene id G12190
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 18018668 ~ 18278524 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU13493
TAAAGGCTACAGGTCTTCAGTGCGATCAGCGCACGTGTTCCCAACAGCAGCAGCAGACGCTAATGAAAACTAATGGCACCTCTGCAGCGTCGGCCGACACGCCACACCAGCGGCTACAACGAGCCGCTTTCAATTAACCGCGTGTCACCGCCGCTGTCTTCAACACAGCTCTTATTCAGGGAAACCTGATGACTGTGTTGCTTAAGGGAACCAATCACAACAAATGATTTAAAAACTGTTCATACATGTATGAAACTTAGGAAAAGTGACATTTTAAATCAATCGAGTTTCAAATTTAACTTTCAAAAGGTAACGACAGTTTGAGAAGGCTAAACGACGCACGCCCCAAAATTTGATAGCTTGTTATCTTGTACAGACAGATGTTGTTATCTCAGTTTTCCTTATCTGGTACCGTGGAGCGGATCGTTTTAGGTTAAGTTTGGGTTTTATCACCTCCAAGACTAATCATTTTGGAAACGGTTGGTCGGCTACTCGTAATTCAAAGCAGGAAGAGAAGGAGAAATGTCTGCATGTGGTACAGCAGCGAGTCTGGGTTGATTGGCACTCTGCAGTGGAATTTATCTCGGCACCACTGATCCATGCTGAAGGAGAGTTCAAGGCATCAGCATGTGCATTGATGAATCACCTGAGACAGACTCATTAATGGAAGAAATGAAAATCAATTTTAACGCAGCCATTCCTCCTATAGATCTGTGCCCATCGGTTGTGAGAGCAGTTTATTGTTTTCTGCTAGATGAATGTGTTGCGTATGTCATACATCAGCCTGTACGTGTGTGACTCAGTGTTTGCTCTTCCGTCTCCTGCTGTGATAAACTTCATTAATATGCTTTCCTAGAGTTTCGTGCGGGGCGTCCCAAAATCAGCTCACTGCATTTAAAAGCAGGCCTTTTACTTCACAGTAGTGTGATAAAAGACGCAAATGTTCAGTAAATAATCATGAATTATTAATAGTTAAATGATTATTTATTTTAATTTGAGTAATTAATAAATATTTTAGTGATTACAAGAATCAAATGCAATGATTCTTTCAACAAAGTAATGAAAAAGCGGTGGCCAAAAGGAAAACTGACATCTTCGCCCGTTATTCAAATATTATTTAAGGTTTTGTGAGTATATTGTGTAGTTGAGTTTGGAGTCGATTGTTTTATTAGTGATGATAATGCAATAAAACATGACAAATTGTGCAGACATAATTTTTGGCCATGGTCGTTAAACATATTCATTGTAAAACAGCCGTCAAATATTAAATGTTTAGCTACTTATATCTTACCACGCATGCACTCTTTCACTGTAAAAACTGAAAGTGTCGTGTTGGATTTCACAATCGTCTTCAGTGAAGTAAGCCCCGCCTTCTTTGATCTGATTGGCCATCATTTTGACTTTGACGAGCGCTGTTAGAGCACTGAGGCAGACCAGCTTAAAAAATGTAACTTTTTAAACTTTCTGTCATCCTAACAAGAAACAGAGTGGTGTGTAATGCAGAGCAGCATTAAGAAATATCAAATATTAAGGGGGGCAATTTGGCCATTTCCAATTATTGAGGGGGACTTGTCTATGGTGGTTACGGCCCTTCCGTAGCTAAGTTTAGCGTTGTGTTCTTCCCTCATATTTAAAATATATTAAAAAATATATAATATTTTTCCTTGTAATTTGATGGTTTTCTTTTAGGTTCATCAAAAACAAAAATCATCACTTTTGGCCACTGCTGTAGATCCTTAGCCTATCTTTTTTATTTTAATATAGAATTATATGAATATAGATGTGATGTGCAGTCACAGGTGTATATCACTCTAAATAAATGCTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU13493 True 1826 lncRNA 0.44 2 18018668 18278524

Neighbor

gene id symbol gene type direction distance location
CI01000000_17943046_17977294 NA coding downstream 41374 17942947 ~ 17977294 (-)
CI01000000_17908883_17915640 MED12 coding downstream 103028 17908883 ~ 17915640 (-)
CI01000000_17884239_17897080 HSPA4B, HSPA4 coding downstream 121588 17884239 ~ 17897080 (-)
CI01000000_17875886_17878748 GNPI1, GNPDA1, GNPI coding downstream 139920 17875708 ~ 17878748 (-)
CI01000000_17867711_17872984 NDFIP1 coding downstream 145684 17867583 ~ 17872984 (-)
CI01000000_18409095_18422809 NA coding upstream 129110 18407634 ~ 18422852 (-)
CI01000000_18470390_18486185 NA coding upstream 190947 18469471 ~ 18486185 (-)
CI01000000_18574740_18584010 SMYD5 coding upstream 295307 18573831 ~ 18584066 (-)
CI01000000_18599527_18602359 NUDT22 coding upstream 320578 18599102 ~ 18602467 (-)
CI01000000_18605257_18608772 GDF9 coding upstream 326011 18604535 ~ 18609087 (-)
G12235 NA non-coding downstream 159271 17859160 ~ 17859397 (-)
G12234 NA non-coding downstream 159735 17858312 ~ 17858933 (-)
G12197 NA non-coding downstream 222212 17796205 ~ 17796456 (-)
G12199 NA non-coding downstream 243894 17774536 ~ 17774774 (-)
G12169 NA non-coding downstream 262348 17755545 ~ 17756320 (-)
G12329 NA non-coding upstream 161973 18440497 ~ 18447573 (-)
G12378 NA non-coding upstream 281298 18559822 ~ 18560075 (-)
CI01000000_18779242_18784513 GABRA6A, GABRA6 non-coding upstream 504731 18778960 ~ 18784513 (-)
G12397 NA non-coding upstream 529300 18807824 ~ 18811485 (-)
G12406 NA non-coding upstream 564298 18842822 ~ 18843057 (-)
G11107 NA other downstream 1350721 16667118 ~ 16667947 (-)
CI01000000_16354158_16360016 NA other downstream 1654121 16353959 ~ 16360213 (-)
G10672 NA other downstream 1787542 16226287 ~ 16231126 (-)
CI01000000_14200000_14436182 TENM2 other downstream 3520074 14200000 ~ 14436253 (-)
G9602 NA other downstream 3672134 14341002 ~ 14346534 (-)

Expression


Co-expression Network