CI01000001_00872245_00878013 (ZFP64)


Basic Information

Item Value
gene id CI01000001_00872245_00878013
gene name ZFP64
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 870806 ~ 878013 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_00872245_00878013.mRNA
GAGTAAACCACCTCTTAGTAGAAGTGAGTCCCGACATCCACATCTGCGGCTTCTGCAAACAGCAGTACAACAACGTTGAGGTCTTTTTTGCACACAAGCAAAACTGCTGCCAAATCCCCTCGACTCATATATCAGCCCGAAACAACAGTGGACCCAGTGAGACATTTCAGACATGTGTACCAAAAGTCAAAAAGACCCTCACCAAAGCCCAGAAAACCCCCTCCAAAAAGCTAAAGCCTGCACTAACTCAGAAAAGACACATATGCACATTCTCAGGTTGTACATTCAAAACTCAGTATGGCCAAAAAGACATGGAGAGACATATGTTAACACATACTGGTGAGAGGCCTTTCGAGTGTGAACTGTGTCATAAACGCTTCAGTCGTCGTGATAAGCTGAATCTCCACAGCCGTTTGCACACAGGAGAGAAACCACACAAGTGTAAGTACTGTCCATACGCGGCGGCTGACAGCAGTAGCCTGAAGAAGCATCTTCGTATCCACTATGACGAGAGACCCTTTAAGTGTCAGATATGCCCCTACGCCAGCCGCAACTCCAGCCAGCTAACCGTTCACCTCCGATCTCACACAGGTGACGCCCCGTTCCAGTGCAATCAATGCGACGCCAAATTCAAGATCAACTCTGACCTGAAGCGTCACAGTCGGGTTCACTCCGGCGAGAAGCCTTATAAATGTGAACTCTGTGAGTATCGCTGTGCCATGAAGGCCAATTTAAAATCGCATGTGCAGCTGAAGCACAGTGCCTCAGACTCCTTCCGTTGCTCAAAGTGCGACTTCCAGTGCTCCACCAAAGCCGCCCTGCGACACCATTCCCGCCAGCACCAGCCGGCCCAGCCTTTGCAGTGCAGCGAGTGCACTTACTCCTGCTCCAGCAAGGGGGCTCTCAAGATCCACGAGCGCGTGCACTCAGACGAACGGCCCTTTAAATGCGAGCACTGTTCATTTGCTAGTAAGCAGCGCAGTAATTTGTTAATTCACAGGAGGAAGTGTCATGCGGATAAACCGGACCGGCAGTGTAAAGGCGGGACAGGGGAGGAGCCACCCAAACCTCTTAGCTCACGCTACCGGGCGAGACTGGAGGCAACGCGGGCGTTTCGTTGTGACTTGTGCGAGGCTTCGTTCGTCAGGGAGGATTCTCTTCGCAGCCACAAGAGGCAGCATAACAGTAACGCACAACAACAAACTCATAATCAAGAGTCACAAACTGTTACCAAACAACCTGTACAAAATGCAGGATTTGCCTCTATTGCAACCGATGTGCCGTCTTCCTACAGTGCAACGCATCTTAAGATCATTGTGGCGCCCTCTTTAGTACCGGAGGCTACTTTTGTTCAGGCTTCCACTGCAAAGACGCTGCTCGGTCCAGATGATCACGATGTGCTTTTGAACCCTGTTATACAACACGTCAACATGCTAGCACCAGAAGGTGGCCTCGAGCACCAGACGGTTTTACTCACTCAAATCAGTCCCGGTGAAACCGTCCCTCAGACCAGTACTCAAAACTTCATCGCATCAGCTTCCGACGGTACACACACCTTTATCACATCCTGTTCTGACCTGGAAAGCCTCCACAAGCTCATCCAGGAGGGCGGGACTGAGGTTACGGTGGTAACGGAGGCGAATCCGACGATCGGCACCACAAAGGAACCACTGAACATTGATGGCGTTTCGTCTCAGGACATGTCCAAACACTCAGAGGTCGCTATGCCTGAAGACAGTTTAGATATTGGTCCACCGGGGACCATTCTTGTTCAAAGTCTCCCTCTGTCCATTTCAACACAAGACCAGCAGGCTAACAAATATCATCTGTCTCCACACCATATATTTTCAGACTCAAACACAGTGGACATCGGTGATTCGTAGTTATGCAAATCATGAGATTTCACTGTGATATCATGGTTAAAACTAACCATGTTTATTTTGTTAATTTCCTGTTTCTTTTTCCAACTAATGCTTCATTCACGTTGTGTTGGAATTACTGTAATAAGATTGGCAATCAGACGTTCAGCTCTGAGGTGTTCACGTCCTCTAACTCAGAAATTATTCACTTTCTACAGCAACATTCATGCAAAATGGATTAAAGGGTTAGTTCATCCAAAAATGAAATTTGTCATTAATTACTCACCCTCATGTCGTTCCAAAACTGTAAGACCTTCGTTCATCTTCAGAACACAAATTAAGATATTTTTGATGAAAATACATCACTATACCTTTTTGAGGTCCAGAAAGGTAGTGAAGACATCGTTAAAATAGTCCATGTGACTACAGTGGTTCAACTTAATGTTACGAGGCGACGAGAATACTTTTTGTGCGCAAAAACAAAACAAAAATAACGACTTTATTCAATATTTTCTTCTCTTCCCTGTCAGTCTCCTGCACTATTGATGTTGTAAACACAGGGTTCCTGGTTCTATGTCCGAACGCCGACTCTGGTCGGCTCCTGTGTCAGCATCTCATGCATGCGTTGTGCTGCTCACGTGAACAGAGTCGTCCAATACTGAGCCAGCGTTCGGACGTAGAACCAGGAACCCTGTGTTTACAACATCAATAGTGCAGGAGACTGACAGGGAAGAGAAGAAAATATTGAATAAAGTCGTTATTTTTGTTTTGTTTTTGCGCACAAAAAGTATTCTTGTCGCCTCATAACATTAAGTTGAACCACTGTAGTCACATGGACTATTTTATTTTATTGATGTCTTTAGTACTTTTCTGGACCTTGAAAGTGGTAATTACATTGCTGCCTATTTCATCAAAAATATCTTTTAATTTGTTTTTCTGAAGATGAACGAAGGTCTTACAGATTTGGAACGACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAATCCTTAAATGTGCAAGTTTGTTGGTAACGACAGCAAAATACTTCATCACTACTTTAATTAACATTGAAATACAAAGAAAGTATATCAGGTAACACCAGTAAATATGCTGTAGAGATTAATAGTTAACTTTAAATGTTCAAACCACTGCCATTTTGGTGGCAGAAATCAGCGCTGTCATAAAATTAAGAGTTCGACAAAGACAAATTTTACAAGTTGAAAATGTGTTATGGATATTCCAATAATTTTGACATGACATAATATATAGGGGTTGCCATGTTGGATCAGGGAGTCATAGTTTCATATTCAAGTTATGTATCGAATCAAATGTGGACAAATTATGTTTTTCCCCTGTTCTACAGTAAAATAAA
>TU14731
CGAAGGTCTTACAGATTTGGAACGACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAATCCTTAAATGTGCAAGTTTGTTGGTAACGACAGCAAAATACTTCATCACTACTTTAATTAACATTGAAATACAAAGAAAGTATATCAGGTAACACCAGTAAATATGCTGTAGAGATTAATAGTTAACTTTAAATGTTCAAACCACTGCCATTTTGGTGGCAGAAATCAGCGCTGTCATAAAATTAAGAGTTCGACAAAGACAAATTTTACAAGTTGAAAATGTGTTATGGATATTCCAATAATTTTGACATGACATAATATATAGGGGTTGCCATGTTGGATCAGGGAGTCATAGTTTCATATTCAAGTTATGTATCGAATCAAATGTGGACAAATTATGTTTTTCCCCTGTTCTACAGTAAAATAAACATTCTACTTTTTCAGTCATTGACTTGCTTTTACCTTTTAAATTGTGTTGTAACTGTAAGGTGTGTGTGTGTGT
>TU14729
CGAAGGTCTTACAGATTTGGAACGACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAATCCTTAAATGTGCAAGTTTGTTGGTAACGACAGCAAAATACTTCATCACTACTTTAATTAACATTGAAATACAAAGAAAGTATATCAGGTAACACCAGTAAATATGCTGTAGAGATTAATAGTTAACTTTAAATGTTCAAACCACTGCCATTTTGGTGGCAGAAATCAGCGCTGTCATAAAATTAAGAGTTCGACAAAGACAAATTTTACAAGTTGAAAATGTGTTATGGATATTCCAATAATTTTGACATGACATAATATATAGGGGTTGCCATGTTGGATCAGGGAGTCATAGTTTCATATTCAAGTTATGTATCGAATCAAATGTGGACAAATTATGTTTTTCCCCTGTTCTACAGTAAAATAAACATTCTACTTTTTCAGTC
>TU14730
GTTGAACCACTGTAGTCACATGGACTATTTTATTTTATTGATGTCTTTAGTACTTTTCTGGACCTTGAAAGTGGTAATTACATTGCTGCCTATTTCATCAAAAATATCTTTTAATTTGTTTTTCTGAAGATGAACGAAGGTCTTACAGATTTGGAACGACATGAGGGTGAGTAATTAATGACAGAATTTTCATTTTTGGGTGAACTAATCCTTAAATGTGCAAGTTTGTTGGTAACGACAGCAAAATACTTCATCACTACTTTAATTAACATTGAAATACAAAGAAAGTATATCAGGTAACACCAGTAAATATGCTGTAGAGATTAATAGTTAACTTTAAATGTTCAAACCACTGCCATTTTGGTGGCAGAAATCAGCGCTGTCATAAAATTAAGAGTTCGACAAAGACAAATTTTACAAGTTGAAAATGTGTTATGGATATTCCAATAATTTTGACATGACATAATATATAGGGGTTGCCATGTTGGATCAGGGAGTCATAGTTTCATATTCAAGTTATGTATCGAATCAAATGTGGACAAATTATGTTTTTCCCCTGTTCTACAGTAAAATAAACATTCTACTTTTTCAGTC

Function

symbol description
zfp64 Predicted to enable metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZFP64 (ZFP64 zinc finger protein).

NR:

description
Wu:fo94f09 protein, partial

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_00872245_00878013.mRNA False 3248 mRNA 0.44 5 870880 878013
TU14731 False 516 lncRNA 0.40 1 870806 871321
TU14729 False 460 lncRNA 0.32 1 870862 871321
TU14730 True 594 lncRNA 0.32 1 870862 871455

Neighbor

gene id symbol gene type direction distance location
CI01000001_00839822_00841040 NA coding downstream 28459 839630 ~ 842421 (-)
CI01000001_00808831_00814314 SALL4 coding downstream 56239 807938 ~ 814641 (-)
CI01000001_00754687_00806154 ATP9A coding downstream 64338 754565 ~ 806542 (-)
CI01000001_00716122_00741331 NA coding downstream 129260 716103 ~ 741620 (-)
CI01000001_00636063_00642086 KCNG1 coding downstream 228501 636042 ~ 642379 (-)
CI01000001_00925612_00928679 NA coding upstream 47427 925440 ~ 928949 (-)
CI01000001_01030701_01030988 NA coding upstream 152241 1030254 ~ 1031164 (-)
CI01000001_01033836_01034518 NA coding upstream 155323 1033336 ~ 1034920 (-)
CI01000001_01056812_01066005 NA coding upstream 178439 1056452 ~ 1066123 (-)
CI01000001_01068423_01079855 NA coding upstream 189627 1067640 ~ 1080617 (-)
G13236 NA non-coding downstream 10352 860239 ~ 860528 (-)
G13009 NA non-coding downstream 41262 829368 ~ 829618 (-)
G12999 NA non-coding downstream 50292 820389 ~ 820588 (-)
G12997 NA non-coding downstream 52753 817787 ~ 818127 (-)
G12907 NA non-coding downstream 159564 614220 ~ 711316 (-)
G13262 NA non-coding upstream 38235 916248 ~ 916447 (-)
G13264 NA non-coding upstream 41226 919239 ~ 919520 (-)
G13265 NA non-coding upstream 42902 920915 ~ 921145 (-)
G13266 NA non-coding upstream 43250 921263 ~ 921485 (-)
G13286 NA non-coding upstream 74732 952745 ~ 952993 (-)
CI01000001_00362143_00378213 NA other downstream 473747 361614 ~ 378213 (-)
CI01000001_00238241_00249437 NA other downstream 613363 238241 ~ 249437 (-)
CI01000001_00124107_00131285 ELOVL4B other downstream 735955 122814 ~ 131380 (-)
G14104 NA other upstream 885656 1763669 ~ 1771468 (-)
G14219 NA other upstream 1116197 1994210 ~ 1994898 (-)
G14228 NA other upstream 1177961 2055974 ~ 2056478 (-)
CI01000001_02258523_02262621 NA other upstream 1381376 2258442 ~ 2263103 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other upstream 3514301 4392314 ~ 4399804 (-)

Expression


Co-expression Network