G123472 (yap1,LOC107758259,LOC107662128,LOC107746561)


Basic Information

Item Value
gene id G123472
gene name yap1,LOC107758259,LOC107662128,LOC107746561
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 1023105 ~ 1051430 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU182468
CCGATTGtaagtttatacatttttaccaaaaaataaaaaaatcagtacaACACACATTTACGGGCCAGTTACTGAGCCATTATGTAGTGTAAAGGTATCCGTATATTGTAAACAAGAGGAAATATTCATATTACTGAATTCCAAGCGTCTGCAGCGAATCTGTAATGGACAAAGTCCCTGTAGTGTTCTGCTCTAGTGAAAAAACGTAAACCTAGGTAACCTGCCTAATGCGTTTTATTAGAACCAGCATAAGAGGACCTGTCAAATCTCGCTTCATTAGAAATCTCCTCAAAAATCAATTAGACCTTTTCTCATTAGCTTATGTCCTACATAAAAGTACGATAAATTATTTTGTCCGttactaacaaacaaaaaaaacaagtctttgGAAGCCTCGAAGAAGTCCTGACAGAAACGATAACTGATTGTTTCCATAAAAGTCTACTCTATCGCTCATATCCACAGTTACCAAATTCCAATCCAAGCTAACAGCTAATCTATAGCACTAACCCTCAAGACGTGCTCATCTATCCATCTAAACGTATCAGAACCTTCCTTTTCCTGTCCCAAACTCCATCAACATGACTGGCACAGACTCTACTGGAGCTCATATCAGAGATGTCTGTCTGTTGATCAAAGTGCCCTTGATATTTTGTTCATTGCTtttgggttaaaaaaagaagaagagatttTCACTAAAATTAGCAAgtaagcaacaacaacaacatcgaCTGAGATACTAAAATCGTAAGATAAAAAGCTATCGCTAACGAAACCAAACGACCCCCTCACCTCAGACCGGTTACGATGTAGCGGAAATGATAGCGTCCACCTAGTTAGTGTTCTTGGCCAATCGGTTCATGTACTGTAAGGCAGCTCTTAGAATACTTGTTCTGTAGAAAACGGTTAAAATGAGAGCAAAAACAGACCCGATTTGTATTTGATCACACGTGAATGCCATAACCCTCGCGAAAACAAAATCAGGCTTAAATAAAACTAACACGCAAAGAGGCTAGGGttctttaaagaagaaaaagaagagaaatcaAACCCTAATTcccaacataatattttttttataaaacctttGAAAGAAATATACTTTGATTAATGAAGCGAGTACGTACATTTGATCTATGATCTCTAGCGTAAAAACGACAGGAACATgtctcaatcttttttttttttttttttttgtttgtctgaagGCACTTGATTACACAGTTTCTAGTGTGATATGCTGGCACAGCCAAGCAGCAGTATTCGTTTAACCAAAGCCACACGTTAAAACCCTTTACGGTATAGACCTTTCAAATCGCAATCCCATCACGTACAGACGACCTCCTCAACGCTTTTTGGTTTCTCAGGCTCATTGCCGTACgaggaaaaacaacaacgaaaaaaaaaaaagacagtcagTTGTAGGGCGAGCTGAGATCTTGGGACGCTGCAGTCACGGGAGGTTGCGGTGAGTTGATTTCGGGGGTTCGTCTGTCTTTATTTCTCTCGGAGCCCTCGAAACGACACTTCGCGCACACTACTTCACATTCGCATACTTTGCACGCAGTACAGCCGTGAAAGAGATTTGGGTACTTGTGGATACTTGTCTGTTCATGGGCCAGCCTTGAGGATGcagacatgaaaaaaaaaaaaaagacgtaagtaaaacaaaaagaagccCGACGGTTAAAATACCACTGCTTTTAAAACCAATTCGGCCAAACGTAGCGAACAGAAGATATCGAAAAAAAACCAGTCCAGTAGGGTgaaatgtcttttcttttcttttctcaactCGGCGCATCTACACATCCTTCACAGATTGGATTAGGCAGCAGTTCAGCGTGTTGGAAGAGAAGGCGTAGTGCTGGATCCCGGCGCTCTATAGCCAGGTCAGAAAGTTCTCCTTGTCGATCTTGGTAGCTGCCAGCACTGACTCCATGTCGTTGAGGATGTCGGAGCTCAGGGCTTCCTGCAGGCTGGGCATCAGCTCCTCGCCCTCCACTGCCATGCTCTCCCCCTCCAGGGTGCCCAAGTCCACGTCTGTGCCCGGGATGGCGTCTAGGTAGTCGGGGAAACGGCTGGGCTGTGTTGCCATCGGGCTGGGGCCGAGGGTATCGCCTGGGAGCGAGACGGTTTGCTCTTAAAAATGTGCTGGTGCCATTTGTGTGAGGTTATATTGAGTGCTCTTGTCGTGGCGTACCTGTCTCCATCTCGTCCACGCTGTTGAGGAAGTCGTCTGGAGTGCGGGGGACGCTGTAACTGCTCATGCTCAGGCCGCTGTCCGTGCTCTCGTCTCT

Function

symbol description
yap1 Involved in several processes, including dorsal/ventral axis specification; embryonic hemopoiesis; and heart formation. Acts upstream of with a positive effect on BMP signaling pathway. Acts upstream of or within several processes, including animal organ development; fin regeneration; and positive regulation of glutamate-ammonia ligase activity. Located in chromatin and nucleus. Is expressed in several structures, including central nervous system; digestive system; fin; mesoderm; and tail bud. Used to study coloboma. Human ortholog(s) of this gene implicated in uveal coloboma-cleft lip and palate-intellectual disability. Orthologous to human YAP1 (Yes1 associated transcriptional regulator).

NR:

description
PREDICTED: transcriptional coactivator YAP1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU182468 True 2300 lncRNA 0.43 2 1023105 1051430

Neighbor

gene id symbol gene type direction distance location
sipa1l3 sipa1l3,LOC107687359,LOC107554497,LOC107662132,LOC107758252,LOC107746578,LOC107560140 coding upstream 3807 951898 ~ 1019298 (+)
ttc9b ttc9b,LOC107756857,LOC107560155,LOC107662133,LOC107758251,LOC107657468 coding upstream 108493 891613 ~ 914612 (+)
c18h19orf47 si:ch211-160d20.3,LOC107657470,LOC107662134,LOC107758250,LOC107560146 coding upstream 134149 882948 ~ 888956 (+)
fosb fosb,LOC107757073,LOC107657472,LOC107560154,LOC107758249,LOC107662135,LOC108433461 coding upstream 142812 874687 ~ 880293 (+)
capn12 capn12,LOC107657473,LOC107757007,LOC107554500,LOC107560139,LOC107758230 coding upstream 161089 841411 ~ 862016 (+)
nucb2b nucb2b,LOC107746563,LOC107656849,LOC107657662,LOC107554560,LOC107739429 coding downstream 318063 1369493 ~ 1376040 (+)
lmo2 lmo2,LOC107554475,LOC107746581,LOC107656846,LOC107739430,LOC107554555 coding downstream 357911 1409341 ~ 1413595 (+)
alx4b alx4b,LOC107554474,LOC107656842,LOC107746571,LOC107752273,LOC107657598,LOC107554564,LOC105910397 coding downstream 371111 1422541 ~ 1437003 (+)
c18h11orf58 zgc:56106,LOC107746577,LOC107554484,LOC107554557,LOC107690399,LOC107715205 coding downstream 561171 1612601 ~ 1614722 (+)
rcn2 rcn2,LOC107725741,LOC107691133,LOC107690352,LOC107562116,LOC107567882 coding downstream 672192 1723622 ~ 1725947 (+)
G123422 map3k10,LOC107560156,LOC107554498,LOC107758231,LOC107668271,LOC107756783 non-coding upstream 103128 850653 ~ 919977 (+)
G123312 NA non-coding upstream 493486 529398 ~ 529619 (+)
G123301 ryr1b,LOC107676751,LOC107596888,LOC107758351 non-coding upstream 510473 511298 ~ 512632 (+)
G123282 LOC107676751,LOC107758351 non-coding upstream 546704 464104 ~ 476401 (+)
G123257 NA non-coding upstream 660069 361393 ~ 363036 (+)
LOC122323124 NA non-coding downstream 45033 1096463 ~ 1129331 (+)
G123491 NA non-coding downstream 180336 1231766 ~ 1236921 (+)
G123493 NA non-coding downstream 191932 1243362 ~ 1250048 (+)
G123511 NA non-coding downstream 325387 1376817 ~ 1379899 (+)
G123508 NA non-coding downstream 346966 1398396 ~ 1399790 (+)
LOC122362993 LOC107758246,LOC107662138,LOC107657475,LOC107757244 other upstream 199430 814751 ~ 823675 (+)
G123243 NA other upstream 914273 108369 ~ 108832 (+)
G123568 NA other downstream 513996 1565426 ~ 1571931 (+)
G123664 NA other downstream 950356 2001786 ~ 2002290 (+)
LOC122363059 LOC107714787,LOC107556260,LOC107691117,LOC107551460,LOC565819,LOC107715220,LOC107690391 other downstream 1155769 2207199 ~ 2240260 (+)
plin1 plin1,LOC107549017,LOC107715593,LOC107577193 other downstream 1250328 2301758 ~ 2319140 (+)
chd2 chd2,LOC107690375,LOC107715217,LOC107693036,LOC107715589 other downstream 1359303 2410733 ~ 2461790 (+)

Expression


Co-expression Network