LOC122362701


Basic Information

Item Value
gene id LOC122362701
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 7782192 ~ 7784566 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU184516
CGACGTATGGCTGTGGCTGAGCTGCTTCTGTACAACAGCGGTGGAACGGCGCGCGAATAATTTGAATCTATTCCAGGCTAACTCATCCATTCTTTTTTCAGTGAGCCTGTTTCGCCAACTACCTGACGATACTACAGCAGCCGTCAAGTCAACCGAGgtaagtctatatatatatatctttgcGTTCTGATAAGAATGAAACATACATCTTTTGAAGCCTTAAATTCAATAAACTCAAGCATTTAAACTCATAAAGTAAACTGTTACATATTGATCGTTGATTATGAAAATTGCATCTATCCTGGATGGTCACTACCCTAGGTAGCAATATGATGCAGCTAAGtcaaagtaaataatattaatttaatgttactttCTATAAATTTAGCTAAGATCACATGGTGGATCAAAACATTACTGTCAGCATTTCCTGTTTAGTTTCAAAATCATTGTCTCAGTGGAACATTGActttaatgtgtaaatgtaaaacaaatgtattaaaaaatgctttttggctTCAGGCCATGTGGAAAGACAGCATGTCAGCATGCTGAAATCATGTGTGGAATAAATctgcttttgttattgttattactattaatattttttcaatctGTAATAAGCATAGACAAGTCTTGTAATGTAATATGACATTACATcaaattctgtattttcttttcatgcaaAATCTGTGTAAAGCAGCTGAAAAGATGTCTGAATTTTACTGTATGAAGGTACATACATCATGCAaatctaaatgctttttaaCACCAAGCAttgtcattttaagtaaaaGCAAAAGTTTATAGTTAAACCATAGTGCTTTGTTTCATTAACTAGAACCATATATATTACCTTTATGCTTTCTACATAAAAGTTTTGGATAATCAAAATGTTGGTTTACCCACTCAGATGCATTTAATGCCTCAACAAATCTTGgacagggtgagtaaaacagaatttttacCTCTGGGTCGGGTAATACTTTTTTGACCATATTACCtcgaaaatatttttaaaaaagtctctTTGATCAAAACCAAAGTTAATATACCAATTTAATTCAACGTCAGTGAAGTAGTAGGCTTGATATGCTCAAAACAAGTTCTGATGATTGGCTGTGGCGAGGCATCGAGAAAGTCAAGAGtttgaaaaattcaaaaactaGTATCAAAGTCAAGTTACTGTTATTGatagagaatattttttttatgattacattcatttttttggttaacttgtatcaataaaacacttcatcagacaattgtatttatttaataaaaaataatgagtcATGTTTAACTCATTAATGGACAGTAGCTAGTCATGTTTTAAAAGAGGCCACTCAACTGAGCTTCTAAGTCATCTGTACTCATTTAGCTGCATCTCTCTTTTTTGGCACAGTTATCCAACTAATTGACCTATCAAACCTCTTGACAAAGAGTGTCCCAGGACCTGCACTAGTTCAAGTCTGAACTCTCAGCTGGATGTTCTGATATTTGCTGCTCACATCTCTGACTCCTGGACAGAAATATCTTATTGGATGTTGCAGGACCATCAACTCAAACTTGCCAAGACAGAACTGCTCATGTTTTCTGCCAACCCAACCTTAGTGTTACCGTTGCCTAGATCCTGCAGATTTGCCCTGTACAACATTAGGAACTTCAGACCCTTCTATGGGTCATGCTACAGAACTCTTTGTCCAAGCTCTCGTTCTCTCCAGACTTATCTATTGTACTTCTCTCTTTGCAGAACTTCCAGCATGTACTATCAAACGTCTGCTAAAAACCTAGCAAGTGGCACTGTGGTGTGTTACATCACATTCCAAAGAGGCACAGATTCACTTTTACAGACCTTTAAGATGACTGTTTGATGCTGTTGCAATAAACTGTCCAACTCTGTCTATTTTCAAGAAATTACTCAAATTTTTTCCCCATCAATACTTGAACCAGTAaagatagttcatccaaaatgtttactttgttatttcagacaaacacaatcAATGAACATCCTGGTTCTTTCAGGCTTTATAATGTtagtgtaagggtcccccttttcctgcagaacagaatccagaggccctggtcgaaggtcaatgcgtgttcggtcttttcatTACG
>XR_006253153.1
tataaatctttgcGTTCTGATAAGAATGAAACATACATCTTTTGAAGCCTTAAATTCAATAAACTCAAGCATTTAAACTCATAAAGTAAACTGTTACATATTGATCGTTGATTATGAAAATTGCATCTATCCTGGATGGTCACTACCCTAGGTAGCAATATGATGCAGCTAAGtcaaagtaaataatattaatttaatgttactttCTATAAATTTAGCTAAGATCACATGGTGGATCAAAACATTACTGTCAGCATTTCCTGTTTAGTTTCAAAATCATTGTCTCAGTGGAACATTGActttaatgtgtaaatgtaaaacaaatgtattaaaaaatgctttttggctTCAGGCCATGTGGAAAGACAGCATGTCAGCATGCTGAAATCATGTGTGGAATAAATctgcttttgttattgttattactattaatattttttcaatctGTAATAAGCATAGACAAGTCTTGTAATGTAATATGACATTACATcaaattctgtattttcttttcatgcaaAATCTGTGTAAAGCAGCTGAAAAGATGTCTGAATTTTACTGTATGAAGGTACATACATCATGCAaatctaaatgctttttaaCACCAAGCAttgtcattttaagtaaaaGCAAAAGTTTATAGTTAAACCATAGTGCTTTGTTTCATTAACTAGAACCATATATATTACCTTTATGCTTTCTACATAAAAGTTTTGGATAATCAAAATGTTGGTTTACCCACTCAGATGCATTTAATGCCTCAACAAATCTTGgacagggtgagtaaaacagaatttttacCTCTGGGTCGGGTAATACTTTTTTGACCATATTACCtcgaaaatatttttaaaaaagtctctTTGATCAAAACCAAAGTTAATATACCAATTTAATTCAACGTCAGTGAAGTAGTAGGCTTGATATGCTCAAAACAAGTTCTGATGATTGGCTGTGGCGAGGCATCGAGAAAGTCAAGAGtttgaaaaattcaaaaactaGTATCAAAGTCAAGTTACTGTTATTGatagagaatattttttttatgattacattcatttttttggttaacttgtatcaataaaacacttcatcagacaattgtatttatttaataaaaaataatgagtcATGTTTAACTCATTAATGGACAGTAGCTAGTCATGTTTTAAAAGAGGCCACTCAACTGAGCTTCTAAGTCATCTGTACTCATTTAGCTGCATCTCTCTTTTTTGGCACAGTTATCCAACTAATTGACCTATCAAACCTCTTGACAAAGAGTGTCCCAGGACCTGCACTAGTTCAAGTCTGAACTCTCAGCTGGATGTTCTGATATTTGCTGCTCACATCTCTGACTCCTGGACAGAAATATCTTATTGGATGTTGCAGGACCATCAACTCAAACTTGCCAAGACAGAACTGCTCATGTTTTCTGCCAACCCAACCTTAGTGTTACCGTTGCCTAGATCCTGCAGATTTGCCCTGTACAACATTAGGAACTTCAGACCCTTCTATGGGTCATGCTACAGAACTCTTTGTCCAAGCTCTCGTTCTCTCCAGACTTATCTATTGTACTTCTCTCTTTGCAGAACTTCCAGCATGTACTATCAAACGTCTGCTAAAAACCTAGCAAGTGGCACTGTGGTGTGTTACATCACATTCCAAAGAGGCACAGATTCACTTTTACAGACCTTTAAGATGACTGTTTGATGCTGTTGCAATAAACTGTCCAACTCTG
>XR_006253154.1
CTTCTGTACAACAGCGGTGGAACGGCGCGCGAATAATTTGAATCTATTCCAGGCTAACTCATCCATTCTTTTTTCAGTGAGCCTGTTTCGCCAACTACCTGACGATACTACAGCAGCCGTCAAGTCAACCGAGCTGAAAAGATGTCTGAATTTTACTGTATGAAGGTACATACATCATGCAaatctaaatgctttttaaCACCAAGCAttgtcattttaagtaaaaGCAAAAGTTTATAGTTAAACCATAGTGCTTTGTTTCATTAACTAGAACCATATATATTACCTTTATGCTTTCTACATAAAAGTTTTGGATAATCAAAATGTTGGTTTACCCACTCAGATGCATTTAATGCCTCAACAAATCTTGgacagggtgagtaaaacagaatttttacCTCTGGGTCGGGTAATACTTTTTTGACCATATTACCtcgaaaatatttttaaaaaagtctctTTGATCAAAACCAAAGTTAATATACCAATTTAATTCAACGTCAGTGAAGTAGTAGGCTTGATATGCTCAAAACAAGTTCTGATGATTGGCTGTGGCGAGGCATCGAGAAAGTCAAGAGtttgaaaaattcaaaaactaGTATCAAAGTCAAGTTACTGTTATTGatagagaatattttttttatgattacattcatttttttggttaacttgtatcaataaaacacttcatcagacaattgtatttatttaataaaaaataatgagtcATGTTTAACTCATTAATGGACAGTAGCTAGTCATGTTTTAAAAGAGGCCACTCAACTGAGCTTCTAAGTCATCTGTACTCATTTAGCTGCATCTCTCTTTTTTGGCACAGTTATCCAACTAATTGACCTATCAAACCTCTTGACAAAGAGTGTCCCAGGACCTGCACTAGTTCAAGTCTGAACTCTCAGCTGGATGTTCTGATATTTGCTGCTCACATCTCTGACTCCTGGACAGAAATATCTTATTGGATGTTGCAGGACCATCAACTCAAACTTGCCAAGACAGAACTGCTCATGTTTTCTGCCAACCCAACCTTAGTGTTACCGTTGCCTAGATCCTGCAGATTTGCCCTGTACAACATTAGGAACTTCAGACCCTTCTATGGGTCATGCTACAGAACTCTTTGTCCAAGCTCTCGTTCTCTCCAGACTTATCTATTGTACTTCTCTCTTTGCAGAACTTCCAGCATGTACTATCAAACGTCTGCTAAAAACCTAGCAAGTGGCACTGTGGTGTGTTACATCACATTCCAAAGAGGCACAGATTCACTTTTACAGACCTTTAAGATGACTGTTTGATGCTGTTGCAATAAACTGTCCAACTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184516 True 2127 lncRNA 0.36 3 7782192 7784566
XR_006253153.1 False 1735 lncRNA 0.34 2 7782440 7784344
XR_006253154.1 False 1335 lncRNA 0.37 3 7782216 7784344

Neighbor

gene id symbol gene type direction distance location
LOC122362721 lamb1 coding upstream 691626 7088818 ~ 7090566 (+)
def8 def8,LOC107742104,LOC107755590 coding upstream 763143 6961115 ~ 7019049 (+)
mc1r mc1r,tubb3,LOC107662306,LOC107706122,LOC103037812 coding upstream 844034 6935956 ~ 6938158 (+)
tcf25 tcf25 coding upstream 872117 6872800 ~ 6910075 (+)
LOC122323232 cyba,LOC107550118,LOC107661987,LOC107571231,LOC107715044,LOC107698019,LOC100705310 coding upstream 910710 6868863 ~ 6871482 (+)
LOC122362727 NA coding downstream 61434 7846000 ~ 7848851 (+)
emc8 emc8,LOC106587369 coding downstream 205967 7990533 ~ 7994775 (+)
si:ch211-220f16.2 LOC107711757,LOC107567291,LOC107667970,LOC107674998,LOC107565346 coding downstream 358933 8143499 ~ 8168224 (+)
LOC122362731 NA coding downstream 1018417 8802983 ~ 8806025 (+)
LOC122362732 spon1,LOC107728096,LOC107567810,LOC107554002,LOC107741890 coding downstream 1214783 8999349 ~ 9009049 (+)
LOC122323061 NA non-coding upstream 210056 7569059 ~ 7572136 (+)
LOC122362591 NA non-coding upstream 427043 7354500 ~ 7355149 (+)
LOC122323033 NA non-coding upstream 463181 7317222 ~ 7319011 (+)
G124913 NA non-coding upstream 609758 7172019 ~ 7172434 (+)
G124907 NA non-coding upstream 722595 7059351 ~ 7059597 (+)
G124978 NA non-coding downstream 27771 7812337 ~ 7819552 (+)
G124985 NA non-coding downstream 94130 7878696 ~ 7879402 (+)
G125014 NA non-coding downstream 200339 7984905 ~ 7985386 (+)
G124998 cox4i1,LOC107731261,LOC107663352,LOC107694487,LOC107705630,LOC107572641,LOC107565335,LOC101062555 non-coding downstream 202219 7986785 ~ 7989120 (+)
G125039 NA non-coding downstream 348925 8133491 ~ 8133785 (+)
G124920 NA other upstream 603916 7177839 ~ 7178276 (+)
G124914 NA other upstream 609172 7172626 ~ 7173020 (+)
G124881 LOC102215562 other upstream 755057 7026318 ~ 7027135 (+)
G124727 LOC107750410,LOC107695433,LOC107548924,LOC107739781,LOC107739761,LOC107564274,LOC107702188,LOC107728083,LOC107739792 other upstream 1241285 6539247 ~ 6540907 (+)
G124707 NA other upstream 1490267 6291491 ~ 6291925 (+)
gins2 gins2,psf2 other downstream 211006 7995572 ~ 8007882 (+)
si:ch73-103b9.2 LOC107675000,LOC107667976,LOC107719884,LOC107711755,LOC107567296,LOC101883751 other downstream 384299 8168865 ~ 8532072 (+)
G125041 atmin,LOC107719888,LOC107711756,LOC107567294,LOC107667974 other downstream 391787 8176353 ~ 8536948 (+)
LOC122362910 cmc2,LOC107711752 other downstream 402966 8187532 ~ 8190387 (+)
LOC122362511 cmc2,LOC107711752 other downstream 760133 8544699 ~ 8547723 (+)

Expression


Co-expression Network