LOC122362511 (cmc2,LOC107711752)


Basic Information

Item Value
gene id LOC122362511
gene name cmc2,LOC107711752
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 8544699 ~ 8547723 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU184596
TAAACACGTCAATGTCACTCTAAACACGTGAACTGTGCTGCCCTTCACGAGCAACAGACCGCTGGATTGAGTTCATTGATTCGCAGAGCTGTCGATTCAGTCTCTGTTTTCAGATGAAACGTCTGTAAGAGCTTTGCAGGGCAGGTGTTGTCACAGCTTGCAAGTCACACAGCCTTAACTCAGGATGCACCCTGATTTGTCGCCCCATCTCCATACTGACGAGTGCAATGAACTCATAACACTTCTCAAACAGTGCCACAAGGAGCATAATGTCCTCAAGTTCTTTGGCGCGTGTAATGATGTGGACCGTGCAATGCGGAAGTGTCTTAAGAAAGAGTATCAGGCGAAGAGGGAGCGCAGCAAGGCTCACGCTGAAGAAATGAGACGGCGTTTAAAAGAACAACCGACACCAAACCACCCATAGAATCAAACCTCGTCCACCCCCTCGGAGAACAAAGCTACTACAGACGTGGACTTGTTTCTGGTGTCGGGGTGCGCGGACGCTTTAAACCTGGAATGCTTTTCTGTGAGGATGAATTAATGATGACCCTTACGGTAAATAAGGTGGTAGAGTACGTTTAAGACGAAACGTAACtttatttaatgatgtttaattGCAGGCCGTGAGCTTTATCCccaattaaaaagtttaaagtgaACGTTGTCGTTAGCGC
>TU184597
TAAACACGTCAATGTCACTCTAAACACGTGAACTGTGCTGCCCTTCACGAGCAACAGACCGCTGGATTGAGTTCATTGATTCGCAGAGCTGTCGATTCAGTCTCTGTTTTCAGATGAAACGTCTGTAAGAGCTTTGGTAAGTGTCCCAGGTTTTAGAGATGAGTGATGGAATGGGATGGGGAGGCTGTAATTTGTCGCCCCATCTCCATACTGACGAGTGCAATGAACTCATAACACTTCTCAAACAGTGCCACAAGGAGCATAATGTCCTCAAGTTCTTTGGCGCGTGTAATGATGTGGACCGTGCAATGCGGAAGTGTCTTAAGAAAGAGTATCAGGCGAAGAGGGAGCGCAGCAAGGCTCACGCTGAAGAAATGAGACGGCGTTTAAAAGAACAACCGACACCAAACCACCCATAGAATCAAACCTCGTCCACCCCCTCGGAGAACAAAGCTACTACAGACGTGGACTTGTTTCTGGTGTCGGGGTGCGCGGACGCTTTAAACCTGGAATGCTTTTCTGTGAGGATGAATTAATGATGACCCTTACGGTAAATAAGGTGGTAGAGTACGTTTAAGACGAAACGTAACtttatttaatgatgtttaattGCAGGCCGTGAGCTTTATCCccaattaaaaagtttaaagtgaACGTTGTCGTTAGCGC
>XM_043263989.1
gACGGGAACACGATATATAGACAGGCACCATATATGAGACGTAATAATTAACGTTAGATAGTGCGGCTTTAAAACGGGTTATCGCAATACCTGTCAATTCTGTCAGACTGTCAGCTACAAACGAGGAGCTGAGCGAAATACTTTATGATGATAAACACGTCAATGTCACTCTAAACACGTGAACTGTGCTGCCCTTCACGAGCAACAGACCGCTGGATTGAGTTCATTGATTCGCAGAGCTGTCGATTCAGTCTCTGTTTTCAGATGAAACGTCTGTAAGAGCTTTGGTAAGTGTCCCAGGTTTTAGAGATGAGTGATGGAATGGGATGGGGAGGCTGTAATTTGTCGCCCCATCTCCATACTGACGAGTGCAATGAACTCATAACACTTCTCAAACAGTGCCACAAGGAGCATAATGTCCTCAAGTTCTTTGGCGCGTGTAATGATGTGGACCGTGCAATGCGGAAGTGTCTTAAGAAAGAGTATCAGGCGAAGAGGGAGCGCAGCAAGGCTCACGCTGAAGAAATGAGACGGCGTTTAAAAGAACAACCGACACCAAACCACCCATAGAATCAAACCTCGTCCACCCCCTCGGAGAACAAAGCTACTACAGACGTGGACTTGTTTCTGGTGTCGGGGTGCGCGGACGCTTTAAACCTGGAATGCTTTTCTGTGAGGATGAATTAATGATGACCCTTACGGTAAATAAGGTGGTAGAGTACGTTTAAGACGAAACGTAACtttatttaatgatgtttaattGCAGGCCGTGAGCTTTATCCccaattaaaaagtttaaagtgaA
>XM_043263990.1
gACGGGAACACGATATATAGACAGGCACCATATATGAGACGTAATAATTAACGTTAGATAGTGCGGCTTTAAAACGGGTTATCGCAATACCTGTCAATTCTGTCAGACTGTCAGCTACAAACGAGGAGCTGAGCGAAATACTTTATGATGATAAACACGTCAATGTCACTCTAAACACGTGAACTGTGCTGCCCTTCACGAGCAACAGACCGCTGGATTGAGTTCATTGATTCGCAGAGCTGTCGATTCAGTCTCTGTTTTCAGATGAAACGTCTGTAAGAGCTTTGCAGGGCAGGTGTTGTCACAGCTTGCAAGTCACACAGCCTTAACTCAGGATGCACCCTGATTTGTCGCCCCATCTCCATACTGACGAGTGCAATGAACTCATAACACTTCTCAAACAGTGCCACAAGGAGCATAATGTCCTCAAGTTCTTTGGCGCGTGTAATGATGTGGACCGTGCAATGCGGAAGTGTCTTAAGAAAGAGTATCAGGCGAAGAGGGAGCGCAGCAAGGCTCACGCTGAAGAAATGAGACGGCGTTTAAAAGAACAACCGACACCAAACCACCCATAGAATCAAACCTCGTCCACCCCCTCGGAGAACAAAGCTACTACAGACGTGGACTTGTTTCTGGTGTCGGGGTGCGCGGACGCTTTAAACCTGGAATGCTTTTCTGTGAGGATGAATTAATGATGACCCTTACGGTAAATAAGGTGGTAGAGTACGTTTAAGACGAAACGTAACtttatttaatgatgtttaattGCAGGCCGTGAGCTTTATCCccaattaaaaagtttaaagtgaA
>XM_043263991.1
gACGGGAACACGATATATAGACAGGCACCATATATGAGACGTAATAATTAACGTTAGATAGTGCGGCTTTAAAACGGGTTATCGCAATACCTGTCAATTCTGTCAGACTGTCAGCTACAAACGAGGAGCTGAGCGAAATACTTTATGATGATAAACACGTCAATGTCACTCTAAACACGTGAACTGTGCTGCCCTTCACGAGCAACAGACCGCTGGATTGAGTTCATTGATTCGCAGAGCTGTCGATTCAGTCTCTGTTTTCAGATGAAACGTCTGTAAGAGCTTTGGGCAGGTGTTGTCACAGCTTGCAAGTCACACAGCCTTAACTCAGGATGCACCCTGATTTGTCGCCCCATCTCCATACTGACGAGTGCAATGAACTCATAACACTTCTCAAACAGTGCCACAAGGAGCATAATGTCCTCAAGTTCTTTGGCGCGTGTAATGATGTGGACCGTGCAATGCGGAAGTGTCTTAAGAAAGAGTATCAGGCGAAGAGGGAGCGCAGCAAGGCTCACGCTGAAGAAATGAGACGGCGTTTAAAAGAACAACCGACACCAAACCACCCATAGAATCAAACCTCGTCCACCCCCTCGGAGAACAAAGCTACTACAGACGTGGACTTGTTTCTGGTGTCGGGGTGCGCGGACGCTTTAAACCTGGAATGCTTTTCTGTGAGGATGAATTAATGATGACCCTTACGGTAAATAAGGTGGTAGAGTACGTTTAAGACGAAACGTAACtttatttaatgatgtttaattGCAGGCCGTGAGCTTTATCCccaattaaaaagtttaaagtgaA

Function

symbol description
cmc2 Predicted to be active in mitochondrion. Orthologous to human CMC2 (C-X9-C motif containing 2).

NR:

description
PREDICTED: COX assembly mitochondrial protein 2 homolog

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K18172 CMC2; COX assembly mitochondrial protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU184596 False 674 lncRNA 0.46 4 8544850 8547723
TU184597 False 669 lncRNA 0.46 5 8544850 8547723
XM_043263989.1 False 805 mRNA 0.45 5 8544699 8547708
XM_043263990.1 True 810 mRNA 0.45 4 8544699 8547708
XM_043263991.1 False 807 mRNA 0.45 4 8544699 8547708

Neighbor

gene id symbol gene type direction distance location
si:ch211-220f16.2 LOC107711757,LOC107567291,LOC107667970,LOC107674998,LOC107565346 coding upstream 376475 8143499 ~ 8168224 (+)
emc8 emc8,LOC106587369 coding upstream 549924 7990533 ~ 7994775 (+)
LOC122362727 NA coding upstream 695848 7846000 ~ 7848851 (+)
LOC122362721 lamb1 coding upstream 1454133 7088818 ~ 7090566 (+)
def8 def8,LOC107742104,LOC107755590 coding upstream 1525650 6961115 ~ 7019049 (+)
LOC122362731 NA coding downstream 255260 8802983 ~ 8806025 (+)
LOC122362732 spon1,LOC107728096,LOC107567810,LOC107554002,LOC107741890 coding downstream 451626 8999349 ~ 9009049 (+)
iqcg iqcg coding downstream 1007329 9555052 ~ 9564247 (+)
onecut1 onecut1,LOC107746960,LOC107676486,LOC107712763,LOC107704258 coding downstream 1148500 9696223 ~ 9702146 (+)
fam214a fam214a,LOC107676484,LOC107704272,LOC107550636,LOC107588549 coding downstream 1161481 9709204 ~ 9739406 (+)
LOC122362912 NA non-coding upstream 282833 8260719 ~ 8261866 (+)
G125039 NA non-coding upstream 410914 8133491 ~ 8133785 (+)
G124998 cox4i1,LOC107731261,LOC107663352,LOC107694487,LOC107705630,LOC107572641,LOC107565335,LOC101062555 non-coding upstream 555579 7986785 ~ 7989120 (+)
G125014 NA non-coding upstream 559313 7984905 ~ 7985386 (+)
G124985 NA non-coding upstream 665297 7878696 ~ 7879402 (+)
G125058 NA non-coding downstream 2044 8549767 ~ 8550720 (+)
G125060 NA non-coding downstream 4281 8552004 ~ 8552518 (+)
G125063 NA non-coding downstream 91126 8638849 ~ 8639954 (+)
G125065 NA non-coding downstream 93506 8641229 ~ 8641447 (+)
G125067 NA non-coding downstream 174784 8722507 ~ 8726764 (+)
G125041 atmin,LOC107719888,LOC107711756,LOC107567294,LOC107667974 other upstream 7751 8176353 ~ 8536948 (+)
si:ch73-103b9.2 LOC107675000,LOC107667976,LOC107719884,LOC107711755,LOC107567296,LOC101883751 other upstream 12627 8168865 ~ 8532072 (+)
LOC122362910 cmc2,LOC107711752 other upstream 354312 8187532 ~ 8190387 (+)
gins2 gins2,psf2 other upstream 536817 7995572 ~ 8007882 (+)
G124920 NA other upstream 1366423 7177839 ~ 7178276 (+)
G125192 NA other downstream 811713 9359436 ~ 9365488 (+)
gldn gldn,dmxl2,LOC107588556,LOC107700585,LOC107550630,LOC107704260,LOC107700583,LOC107746935,LOC107704254,LOC107550623 other downstream 1868290 10416013 ~ 10425840 (+)
sema6dl sema6dl,sema6d,LOC107588527,LOC107683673,LOC107557846,LOC107692740 other downstream 2084754 10632477 ~ 10718085 (+)
G125461 ugt5c1,LOC107692742,LOC107738533 other downstream 2277251 10824974 ~ 10837276 (+)
G125496 snrpd2,LOC106612977 other downstream 2420362 10968085 ~ 10969767 (+)

Expression


Co-expression Network