G125041 (atmin,LOC107719888,LOC107711756,LOC107567294,LOC107667974)


Basic Information

Item Value
gene id G125041
gene name atmin,LOC107719888,LOC107711756,LOC107567294,LOC107667974
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 8176353 ~ 8536948 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU184604
tccgCAGTTTATTTTCCAGTCTCATGTGCATCAGCATAGCCTCTAAACAACAGAACATAGCTAGAGCATACACATGACCAGCCtctaaagaacaaaaataatcgtatttttataattattattacacctcatattaaattatgtcctatgctaaattaaataagacatggtgaaaaacaaaaaagcaacacaAGAGTTATTCTTGGcacaaaaatatgcatgcacTCTTTACAAAGAAACACTTGGGACTCCTTCAAGTTTTCTATAGCAATAGTTTTCACTATGACATCATCATTGCCTACACGAAAttgacatgtatttatttcaagatCTAAATAGCATTTCGGTTAACATAGCGGCTGAATACTAGAGTTCCTAGTGTTTGCCATGAAAATACTAAAGCTCTTTTTACGCGGTTACAATGTTGAGAAGCAGCCGATGTGACGTCATAAAAGGAACAGACACTGCGTCACTTACATTCTACTTATTGAAAACCCACTATATACATAAAGTACAGTAGTACAAATAAATTGgacatttcagaaataattcataatacacacatacatatatacacacacacacacacacaaaacaaaataaagctatAGTTGCCTTCCATATTTAGTGTACTAAGGCAAATGAGTAGTGAGTTTTAACGCAGAGAGGAAACATTCATAATAACCATCACAATAATCATACACGCAAAAATACtgcagtaaagaaaaaaaaaacacaaaggatCAATTCCAAACATCCTCCATTAAGCAGCACTGGGATTTCATTATCTCAAATATCCAAAAGCATACGAACACTTAAATTAAGGCATCAACAAAAGGTTTATACAGTGTGTGTAAACAGTTACTTAAAATCATAAGGAGGGATGAACGTATACCATCAAAACTGATTCTTGCTTTCCAAGAAATATTAAAGGTTTCGTTTTACAGTAAACATTTGCGATTTGCGTAATCGAATCTATTCACAGTACAGAATGCAAATCACAGTAAACAAGAACAAATCCTCAGCTCTGCTTCTAAAGGAAATGTAATGTCTTAAACATGCATAAGACGCAAATTCAACTGATTTAGTATGTTACTATTATAACAGTCAACAGGACATATTTGCATGAATTTTGTCATGAATCAAGACCTAAATATACTCACAGTGGCTTTTAGATGGGTCTAGAGCATTGCactgttaaatgtaacaatttttcATAGCACAAAGTAAACAAGCAGcccaagtttaaaaaaacaaaacaaaaaacaagcagcccaagtttaaaataaaaaaaaaacatagcatgTACAAAGACAATAAGACTCAAGACATCTAAACAATATCAGACTAGAAAGTAaacctaaaatacattttatttgtggaATGAAGGTTCATAATTTCTGTCCGATCTGTGAGTAACATCAGTACAAACTTACTACGCATTGCCACAAGCCTGACCTactacaacaaataaaatactttaaggACTTCCGATATATGTGGATCATTAATAGTGAGGTGATAAAGTGCTGCAAAGGTATACTTACACATCCTTAGACTTGGGCAGATAGAAGTGCCTTACTGTGGACCTTACCTGTGTCTAAATGGAAATTCTTCGATTAGACACAACGTTAGTATCTGACAGACTGAGCTCTAGATGGTTGTGAGGAACTGTTTCGAAGTTCTGCCATCCTTGCTGAGGGAGATACTAGGATTGACCATTATGTGACCTAAATTGACCAAATTGCCTTTGATGGAGCCTTCAGCTTGTGGCTTTCTCGTTGTGTTGAAATAGCGAGATGAGCTCCTCACACGTTTGGGTTTCCACCGAGCTAAAGTGAGACTCCATGTTCCAGGCCAAGTCTGCTGAAAGGAAGTCATCCACTGCAGTTTGGGTCTCGTTGCTAGTGTGGAAGAGGTGGCCAAGGCTCTGAAAGGAACTGGAGATGGTCTGGGTTTCAGCAGTGCTAAGCCTCACCTGCCCATCATGGGAGCAAGGCAGAGAAAGTGGAGCGGGCCTGACGTCGGTCTGCGTTTCTGTGTCTGAGGACTCTGTGCTCATGCTGAAACTAGACTGTCTGAGGATACTGCCAAGGGGCATGTGCCCACCCGTGTCAAGTAAGAAGTTAAGGTCCGTCTGGGTCTGCGTGTCAAACATCTCAAGCTCCAGATCACTTGGTTGCACCCTTGTTCCAACATCACTGTTGTGCCCATTACCAAGGTTGTCGAAGAGCAGGAAGTCAGTCTGTGTCTCAATGTCTAGAAGTTCCAAAGTTGTCTCTGTGTTCAGACTGTTTAATCCACTTTCTTCTGTCTGAGTTTGAATGTGTGTGGCATTAAGGAACTCTTCAAAGTCAAAGTCGATACCAGTGTGATGTGGTTCGTGCGTAGCAACTAAACCCGAAGTGCAGCTTGAAGCTGCCCGGTCATGCTGTCAGAAAGAATATTCTCAAGGTCACGGAAAAGTATCATGGTCTGAGTCTGGTTGTCTGCTACTGTGTTTTGGTGCAAAATGTCAGTCTGAGCCCCAAAACACATGGACGCAGCAGTCTTGTCCTCAAAAAGCCCAGCTTCAGTGCTGGTCAGAGGATCTTCTAAGCCACTGGTTCTGAAATGTGCATCATCCTCTGCTGTCTGAGTGGAGACACTGAGAGTATCGGTATTGAAAAACATTGCTTGGTCCATTTGGCTTTCATCCACTGGGGCTGCAGAACAGCTCGTTTGCGTTTCTCGGGTCACATTAAaggaagaaaaactgaaaacatctgTCTGCGCTCCAATGGAAAATGTGGCTTTGATTCGCGAGGGTAGTGTCTGGGTCTGCACATTAACAGGCAGCTGAATCTGAGCGCTTACGCTGATGTCTGTCTGAGAGCAAGAGGACACAGAGGCCTCACAGCAGGGGGAAACAGTCAGCGGTCCAGCATCCATCCCTTTGCTGAGGTATGATATGTCGGTTTGAATGTTTGTTGAAGTGCTTTTGTTTCTGGATCCAAGATCCACTGGATCTCCCAAAGCGGCTTGACTTTCGAGATTGACCTGTACTCCTGTGCTAATTGTTTCTGGGCCTGATGTATGTAATGGAAAGGCCTCTTTAAATGTCTTATTGTTCAGATCAGGCATCACAGTGCCGACTGACGGTGACAAAATATGCACAGTGCTTACGGATCCTTGTGCATCCACAGACAAGACCAAGGACCTCAAGGCACTACTTTCCGCGGAGGGTAGGAGAACAGGCAGGTGGGTGAACTGCATAATAGGAACGTTGACTAGGGCCACTTTGGGCTTCGGGAGGAGGAGTTTTTGGGTGTGTTTGGCGTTGTTAGTGTTGTGCTGTGCTATGTCTGAAGCTCCAGAGACGAGTATGGTAGGGGCTGCTCCTTCCGCTGAGCTTTTTCTTACAGTCTGAATTTCATTTATTAGTTCATCAGGCATAAAATTTGTTGTACTGCTTGa

Function

symbol description
atmin Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ATMIN (ATM interactor).

NR:

description
PREDICTED: uncharacterized protein LOC106562530

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU184604 True 3456 TUCP 0.41 2 8176353 8536948

Neighbor

gene id symbol gene type direction distance location
si:ch211-220f16.2 LOC107711757,LOC107567291,LOC107667970,LOC107674998,LOC107565346 coding upstream 8129 8143499 ~ 8168224 (+)
emc8 emc8,LOC106587369 coding upstream 181578 7990533 ~ 7994775 (+)
LOC122362727 NA coding upstream 327502 7846000 ~ 7848851 (+)
LOC122362721 lamb1 coding upstream 1085787 7088818 ~ 7090566 (+)
def8 def8,LOC107742104,LOC107755590 coding upstream 1157304 6961115 ~ 7019049 (+)
LOC122362731 NA coding downstream 266035 8802983 ~ 8806025 (+)
LOC122362732 spon1,LOC107728096,LOC107567810,LOC107554002,LOC107741890 coding downstream 462401 8999349 ~ 9009049 (+)
iqcg iqcg coding downstream 1018104 9555052 ~ 9564247 (+)
onecut1 onecut1,LOC107746960,LOC107676486,LOC107712763,LOC107704258 coding downstream 1159275 9696223 ~ 9702146 (+)
fam214a fam214a,LOC107676484,LOC107704272,LOC107550636,LOC107588549 coding downstream 1172256 9709204 ~ 9739406 (+)
G125039 NA non-coding upstream 42568 8133491 ~ 8133785 (+)
G124998 cox4i1,LOC107731261,LOC107663352,LOC107694487,LOC107705630,LOC107572641,LOC107565335,LOC101062555 non-coding upstream 187233 7986785 ~ 7989120 (+)
G125014 NA non-coding upstream 190967 7984905 ~ 7985386 (+)
G124985 NA non-coding upstream 296951 7878696 ~ 7879402 (+)
G124978 NA non-coding upstream 356801 7812337 ~ 7819552 (+)
G125058 NA non-coding downstream 12819 8549767 ~ 8550720 (+)
G125060 NA non-coding downstream 15056 8552004 ~ 8552518 (+)
G125063 NA non-coding downstream 101901 8638849 ~ 8639954 (+)
G125065 NA non-coding downstream 104281 8641229 ~ 8641447 (+)
G125067 NA non-coding downstream 185559 8722507 ~ 8726764 (+)
gins2 gins2,psf2 other upstream 168471 7995572 ~ 8007882 (+)
G124920 NA other upstream 998077 7177839 ~ 7178276 (+)
G124914 NA other upstream 1003333 7172626 ~ 7173020 (+)
G124881 LOC102215562 other upstream 1149218 7026318 ~ 7027135 (+)
G124727 LOC107750410,LOC107695433,LOC107548924,LOC107739781,LOC107739761,LOC107564274,LOC107702188,LOC107728083,LOC107739792 other upstream 1635446 6539247 ~ 6540907 (+)
LOC122362511 cmc2,LOC107711752 other downstream 7751 8544699 ~ 8547723 (+)
G125192 NA other downstream 822488 9359436 ~ 9365488 (+)
gldn gldn,dmxl2,LOC107588556,LOC107700585,LOC107550630,LOC107704260,LOC107700583,LOC107746935,LOC107704254,LOC107550623 other downstream 1879065 10416013 ~ 10425840 (+)
sema6dl sema6dl,sema6d,LOC107588527,LOC107683673,LOC107557846,LOC107692740 other downstream 2095529 10632477 ~ 10718085 (+)
G125461 ugt5c1,LOC107692742,LOC107738533 other downstream 2288026 10824974 ~ 10837276 (+)

Expression


Co-expression Network