G125243


Basic Information

Item Value
gene id G125243
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 9786260 ~ 9788103 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU184906
tgcctcgtcacacgccgccagacctggccaataccacgcccctcctctcgaacacacccactcccgtcgggagcctggtgaagggcggcgaataaaggacggggtgatggtgacgataaagaggaggggcagccgactcgtcacattcccctccccaagcgtcaaccccgtcaggcggtcgccgcccacgcaggagtgctaccttcctcaaccaggctccagcggtcggagtgggcggggcagggattctccgggcaactcctctcgcaccgggacagagaaaccgggaattagtcggaatgctcaaccagccaccgggtaaatgacagtaaacgcaggcgtcacttacccttcctggtggctgggagcgagtctccgttgttcctccgtcccggcatggataccagcgagaggggatgatGTCATCAGGCGttgcccaactgtgccgtctaagctccgccttgcccgcattctccaccactgtgacgggaggagccaacgacagacacagtgggcgtggcgtcaggcctcggagaggcttttattattaacaaaataataataatacaaaataataaagtgtccagggaaaagtgtccaaataaaaggggatctggtgtcctcgtcgtg
>TU184907
tgcctcgtcacacgccgccagacctggccaataccacgcccctcctctcgaacacacccactcccgtcgggagcctggtgaagggcggcgaataaaggacggggtgatggtgacgataaagaggaggggcagccgactcgtcacattcccctccccaagcgtcaaccccgtcaggcggtcgccgcccacgcaggagtgctaccttcctcaaccaggctccagcggtcggagtgggcggggcagggattctccgggcaactcctctcgcaccgggacagagaaaccgggaattagtcggaatgctcaaccagccaccgggtaaatgacagtaaacgcaggcgtcacttacccttcctggtggctgggagcgagtctccgttgttcctccgtcccggcatggataccagcgagaggggatgatGTCATCAGGCGttgcccaactgtgccgtctaagctccgccttgcccgcattctccaccactgtgacgggaggagccaacgacagacacagtgggcgtggcgtcaggcctcggagaggcttttttttattattaacaaaataataataatacaaaataaagtgtccagggaaaagtgtccaaataaaaggggatctggtgtcctcgtcgtg
>TU184908
tgtatatatatatatatatatatatatatatatatattgtgacgggaggagccagcgacagacacagtgggcgtggcgtcaggcctcggagaggcttttattattaacaaaataataataatacaaaataataaagtgtccaggggaaaagtgtccaaataaaaggggggatctggtgtcctcgtcgtgccgcggggaaagtgaaggttgaggccgtgttccaggggggaagggtccaggtaaggggcggagtccggcggtcgcacacgctcccctttttctggtccggggcgcgaggggcggcttcttccgcggcgtctccgtcgcttcgttgctc
>TU184910
tgtatatatatatatatatatatatatatatatatattgtgacgggaggagccagcgacagacacagtgggcgtggcgtcaggcctcggagaggctttttttattaacaaaaatagtacaaaataaagtgtccaaggggaaaatgtccaaataaaaggggggatctggtgtcctcgtcgtgccgcggggaaagtgaaggttgaggccgtgttccaggggggaagggtccaggtaaggggcggagtccggcggtcgcacacgctcccctttttctggtccggggcgcgaggggcggcggcttcttccgcggcgtctccgtcgcttcgttgctc

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006397 mRNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
TU184906 False 630 lncRNA 0.59 2 9786837 9787955
TU184907 True 631 lncRNA 0.58 2 9786837 9787955
TU184908 False 337 lncRNA 0.52 3 9786260 9788103
TU184910 False 332 lncRNA 0.53 3 9786260 9788103

Neighbor

gene id symbol gene type direction distance location
arpp19a arpp19a,LOC107704273,LOC107676482,LOC107712699,LOC107550627,LOC107588548,LOC108413875 coding upstream 36477 9744904 ~ 9749783 (+)
fam214a fam214a,LOC107676484,LOC107704272,LOC107550636,LOC107588549 coding upstream 46854 9709204 ~ 9739406 (+)
onecut1 onecut1,LOC107746960,LOC107676486,LOC107712763,LOC107704258 coding upstream 84114 9696223 ~ 9702146 (+)
iqcg iqcg coding upstream 222013 9555052 ~ 9564247 (+)
LOC122362732 spon1,LOC107728096,LOC107567810,LOC107554002,LOC107741890 coding upstream 777211 8999349 ~ 9009049 (+)
LOC122362557 NA coding downstream 359972 10148075 ~ 10160926 (+)
LOC122362596 NA coding downstream 402667 10190770 ~ 10193160 (+)
gnb5b gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270 coding downstream 408701 10196804 ~ 10209150 (+)
bcl2l10 bcl2l10,LOC107747612,LOC107700593,LOC107588535,LOC107704269 coding downstream 421250 10209353 ~ 10214486 (+)
tmod2 tmod2,tmod3,LOC107700589,LOC107746940,LOC107747615,LOC107704266,LOC107550632,LOC108440576,LOC108264495 coding downstream 509394 10297497 ~ 10320648 (+)
G125236 NA non-coding upstream 90577 9694203 ~ 9695683 (+)
G125194 hipk3,LOC107676485,LOC107588537,LOC107712724 non-coding upstream 274018 9419549 ~ 9512242 (+)
G125191 NA non-coding upstream 434362 9351635 ~ 9351898 (+)
G125067 NA non-coding upstream 1059496 8722507 ~ 8726764 (+)
G125065 NA non-coding upstream 1144813 8641229 ~ 8641447 (+)
G125240 NA non-coding downstream 14816 9802919 ~ 10037928 (+)
G125253 NA non-coding downstream 266709 10054812 ~ 10055057 (+)
G125254 NA non-coding downstream 269638 10057741 ~ 10062780 (+)
LOC122323099 NA non-coding downstream 345868 10133971 ~ 10135088 (+)
G125341 mapk6,LOC107550634,LOC107704268,LOC107747613,LOC107588533,LOC107700590 non-coding downstream 460037 10248140 ~ 10249308 (+)
G125192 NA other upstream 420772 9359436 ~ 9365488 (+)
LOC122362511 cmc2,LOC107711752 other upstream 1238537 8544699 ~ 8547723 (+)
G125041 atmin,LOC107719888,LOC107711756,LOC107567294,LOC107667974 other upstream 1249312 8176353 ~ 8536948 (+)
si:ch73-103b9.2 LOC107675000,LOC107667976,LOC107719884,LOC107711755,LOC107567296,LOC101883751 other upstream 1254188 8168865 ~ 8532072 (+)
gldn gldn,dmxl2,LOC107588556,LOC107700585,LOC107550630,LOC107704260,LOC107700583,LOC107746935,LOC107704254,LOC107550623 other downstream 627910 10416013 ~ 10425840 (+)
sema6dl sema6dl,sema6d,LOC107588527,LOC107683673,LOC107557846,LOC107692740 other downstream 844374 10632477 ~ 10718085 (+)
G125461 ugt5c1,LOC107692742,LOC107738533 other downstream 1036871 10824974 ~ 10837276 (+)
G125496 snrpd2,LOC106612977 other downstream 1179982 10968085 ~ 10969767 (+)
ccnl1a ccnl1a,LOC107710830,LOC107563513,LOC107684610,LOC107691967,LOC107557837 other downstream 1438010 11226113 ~ 11233814 (+)

Expression


Co-expression Network