gldn (gldn,dmxl2,LOC107588556,LOC107700585,LOC107550630,LOC107704260,LOC107700583,LOC107746935,LOC107704254,LOC107550623)


Basic Information

Item Value
gene id gldn
gene name gldn,dmxl2,LOC107588556,LOC107700585,LOC107550630,LOC107704260,LOC107700583,LOC107746935,LOC107704254,LOC107550623
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 10416013 ~ 10425840 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU185086
aagaatttattCAACTTACAAAGGTAAAACTTTGACCATGACAGAACTACCTGTTCCTTCGGAAATACCAACCAGTGTTTTGGGGATTGCATTTTCAGACACGCAGACAGATCAGGCTGTTCAATAAATACACATCAGACCATCGgttcaacatttaaaatacgTACAGTTGACATGGTGCCCAGCAAatcagacagaaacacaaatatgattttaataaataccaCATACGTCAAACCAAATATACGACTATTCCAGCAGTTATGATAAAATcgaaaaaataaactaaaagcgTTATTGTGTTTGTACAAGCTATTGTCGTAAttcgtttttatatttatatatatatatttatatatatatttattcgtttaaaacTATTTCCACTTTTTACTACTCGGCCACACACAGCCAGACATTCATTAGTAAATAACAGTTTCCTCTAATAGAGCTTTTATCACTTGTAACGTAAGAGTGTTATTTGTTTCCCCAGATCTGAGTGCAAATATTTAGAATagataaaacatgaaaaaataaatatgtaaataaataaaacacgaaCCTATTCAGTGTTGCACTTTGTCCCAGACATCTAAAACAAACCTTACATTCCTAAAGTTGAATATAAATACGAGAATtcgtaaaagaaaagaaaaacgaaACCGAAAACGAGTAAACGagcattttgtgcaaaaaaacagtttgaggTGAGATTTTCAGGGTTTcgagagacaaagaaaaaaggtcaaatgCGTCATTTCCCGGAGCAAGCGCCGTCGTCTCGCGTGGAATGTTTAGCTGTTTGGCTGCTACGGAAACAAGCGTGTCAACAGCAGCGTGTGCGTGTGATAGGGAGGGGGTGTGTCTCTGGGGCCGCGGCCAATCGCCGGGGCCGCCAGGGTTCTGTGCCATTTTACACTCCGCAAATACATTAGCAGCCAAGGAGAAAACgtacagtaaaaactaaatcCAACAACTGGACTTACACTGAAAGCAGAAGCACAGTGCTGGTATTTTTAGATGCTAAAATGGGCACAaaatgaagacacacacacacatacacacttaaaAATGGAGCTTTGAGCACTTTTACAGAGCACGACCAATAACCTGGGAATGGAGTGCGATGACTCAAACAGCTCATGCATACGGCTTTCCTACCAACACGTTATCTGGACGGAGGTCCAGAAATACGACAGTAGTCGATCGTTAGAATCGAGGGACCTCGTGCGTGTTTTTCCAACGTCTTTTGTGGGGCGGGGTGGTAAAGATATTCTGCAGCGCGAGATATTTGTTACCGGTTTACGATTCACAGCTAAGGAAACACAGCGGAGGTGCCGATGAAAGCTTTGGTCTTCTACGGCCGCTCCGGCGTTAGAGGATCTGGAATATACTGGCCGGAATGTTGTAGCGGTCCGGAAGGACCCTCATTTTCAGGGTCCCGTCGGCTCCGCaggtgaagatccggttgcccGGGCAGGTTTCGATTTGCATCACGCCGGCGCCGATGTTTCGGAATATCGACTGCTTGGCGTGTTCGGTGCTGAAGGAGTGCATGAGCCCGTGACCCGCCAGCTTCCAGACCTGAACCTTCATGTTCCCTTCGGCTGAGCCGGTGACAAAGAAGTCTTCGGTGGAATCCATGGCCAGCGCTTTGATGGCCGAGTCATGTGCCTGGAATGTGTGGAGCAGCTGTCTCTGACGGATGTCAAAAATACAGACGAATCCCTTCCGGCCGCCTGTGATGATTAGCTGCTGTTTAGGAGCATATTGAAGAACCGTCGCGCCATTCTCATGGCACTGGAACCATGTATCATCGAGTTACTTGGAGAGACCAGAGTGTCCCATAAACAGACATTCCTGCGAAAGAAAGTGAAATACTTCCTTAAAAATGTCGTACATAGTCTGTTTCTATATGACGCTAAGATAAATCATTTAACTGACCTGCCATCATTGGACTGTCCTGCCGTGGCTATCAGACTGGAAGATGTAATGAAGGCGAAATCACCGCAGCTTTTACTGTGACACTGCCAGCTCTGAGACAGACAACCCAGAGAtgcttatttttcatattatatgcTGACATATGTTTAATAGTAAAGTTAGtttcaatgaaaacaatgttAGGGCAGTTTGTGACCGTCG
>XM_043263966.1
AGAGCAGCCCTCAGTCGCACAGAGACTCTACTCAAAACAAGGACTTCAATTGTCTTCTCACGTCATTTTCTAGGGGAATATTCTGtactttttgtgcttttggggttttgaacactttttttgtatttccgAACTGAAGTAAGAATGCTGGATCCATTGGCGGAGTTGAGAAGAACCGGAGGCTTTAGGCAGTGTGGTGGCCGGTTGTCCTGGCAGGTGCAGCTGATCTTGTACAGCGTATGCGTACTGACGGTAGTAAACTGTGCTGGCCTGGTTCTGCTCCTGGTTCAGCAGAGAGAGCTGTGGGCTCATCTGACCGAGGTGGAGAAGCAGATGGTGGAGATTTCTCAGAGCTCCGTGGTGGAGTTCATGACCCAGGTGAACGAAGATGAGGCAGAGTATCAATACTCCAGAAACAAACGCAGCCGGCAGCATAGAGGGACGCGACCCTTCGAGGAGCACGAGGGGAGTGTGGGAGAGGAAGTCTTGGGAGATTTCCAGTATCAGTATCCGCAAACGCATGGGCCGGTTTACCAGCACAAAACAGAAGAGCAGGATggaatgatgatgatgatgacataCTCCATGGTGCCAGTTAAAATTCTTCTGGACATTTGCAACAGTACTAAAGGAGTCTGTCTGACTGGGCCACCAGGACCACCGGGAATTCCAGGCTTGCCGGGTGTGGACGGAATGCCGGGGTATAACGGAACAGATGGAATTCCAGGGTTGCCAGGAGAGCCTGGAGCACATGGAAAACGAGGAAAAAGAGGTCCTTCGGGTGAGAAGGGTGAGCCTGGTGAGAGAGGAGAGCAAGGATATCCTGGACCCCCAGGACCACCTGGAGAACAGGCAGAACCTTCAAATGATGTCATTGTAGAAGGTCCACCTGGTCCAGTAGGACCTCCTGGCCTTCCTGGTCCACCTGGCCCTCCAGGGGCCCCCGGGCCTCAAGGACCACCGAGACACAGGAGCCACAGAGCACATCTCCACACCGGGAAGGAGTCTGTAGGTCACCTTAATTCAGTCCCGAATGATGACACCATTAGCCAGAAAATATCACCATGGAAGATGAACGACTGTATCATAAAGTCAGTGCAGAACCCAAGACATCTGATGAAATTAAGCAGCACGTTTGGAGCATGGATGATGGACGCCGCTGCTCAAGACAATGAGAAGATCTGGGTGGCAGAACATTTCTCAGGACGCATCGTAAAGGAGTACAACAGTATCGCGGCGTTCCAGAACAGCAGCAGTGAATCCATTGACGTCCGAAGATTTTTCCAAGGTTGTGGCCACGCTGTACATAACGGCTCCATATTCTACCACATCGCAGGAACGTCCAATATTGCTAAGTTTAACCTCCAGACGAAGATCTTACACGCGCTAACCATTGAAAACGCTTTCTATCACAATAAGTCCTACCTCCTTGAGAACTCGAagacatatttcaaaatagctACAGACGAGAACGGTATGTGGATCATATTTGCCTCCAACGTTGACGACAACATAATGGTGGCACGTCTGGACGAGAAAACGTTCTCCGTCTCCACATACATCAATGCCACTTATCCCAGGACCAAGGCTGGTAATGCGTTCATCGCCTGCGGGATCCTCTACGTCACGGATACTAAAGACACAAGGGTGACATACGCCTTCGACCTCCTGAAAGAGAAGCCTGTTAGTGTCAGTTTAGATCTGAGGGCACCTGGAGGGGTTCTGTCCATGATCTCCTACAATCCCACAGACAAACATCTCTATATATGGGACAGCAGCTATGTCAAGTCATACCAAGTCCAGTTCCTCTCAGATCAATGATCAAAAATGCTTGACATAACTGGCATATATTTATAAGCAAATAACCAATGTTTCTGATGATACTCATGtgtttccatatatatatatatatatatatatatatattttttttttggagtggaTAATATATCAAACGCTAAATTGCCTACCTGGTGATtttcacaaaacataaaaccaagTGTCATCAAATATCAGACAAACAGGGCTTTTAATCAAATGgtgatgttgtttttgttttattaaatcagtTCTCTTCAAGTTTACACGTTataatcatttgaaatgtgtgaatgtgaagacaatatattttaaattctggcttttaatcatttaaagcaAGAATTAAATATACAGTGACTTGTTCAATATAagcttgaaaacaaaaaatatatatatatatgcatgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgcaaattttATTAGTTTGGGTAATGCGCAAGGGATTCGGTTTATCATTCAAAGCCTAACAAACATCTTTGTAGAATGTCCGAAAATTGAATTTGCGCTTGCTTTGTTagaaatacatgcatttgtttttatgctaTTCTATAATGTAATGACTTtaaggctttttttaaaaatgtaacttaagtGTCTACACGCAATTTGGGgctactgtatttatttatcttttggtatttttacttttatatgtTGCATTTCCCTTTCGGCTAACGTGCATTTtaagtgaatatttattattaattcatgcacTATGAGCAgtgcttgtttttgttgaaattgtTCATAAAACCATTGTTATTATTAGCGCGGAAATAGTTAtcactatataactatatatgcAAAAATTCATTATCCTCTTCTTTCATGAATGAAgaagtgtgtgtaaataataaatgcaatatttatgtgCGTTACGtgaatttagtaattttgtatgCATAACCGCTGTTGTCATTGCCATTTAATTTCCCAGCATCATCATGAGATTAGGTATGTGTGTTAAGTAAAGgtgaatttagattttaatgtcatgtttatagaaatgttttgacTGCTAGTATGTATAagacacaaaatgtatttgccaaatattgtttaatttgtattgcatgcatatttatgtaGCCACAGATGCTTGAAAATCCTGAAATAAAACCTGAAACGCGTTACTCTGAAGACACGTGGAGTTGAGGCAGTAAAATCCATGacttaattcaaataaaaagaatttattCAACTTA

Function

symbol description
gldn Predicted to act upstream of or within clustering of voltage-gated sodium channels. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in lethal congenital contracture syndrome. Orthologous to human GLDN (gliomedin).
dmxl2 Acts upstream of or within several processes, including neural crest cell migration; positive regulation of canonical Wnt signaling pathway; and regulation of synaptic vesicle lumen acidification. Predicted to be part of RAVE complex. Is expressed in several structures, including nervous system; neural crest; neural tube; shield; and solid lens vesicle. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 71 and developmental and epileptic encephalopathy 81. Orthologous to human DMXL2 (Dmx like 2).

NR:

description
PREDICTED: gliomedin

GO: NA

KEGG:

id description
K16364 GLDN; gliomedin

RNA

RNA id representative length rna type GC content exon number start site end site
TU185086 False 2145 lncRNA 0.43 3 10422822 10425840
XM_043263966.1 True 3145 mRNA 0.40 10 10416013 10422839

Neighbor

gene id symbol gene type direction distance location
acadl acadl coding upstream 54701 10352575 ~ 10361312 (+)
lysmd2 lysmd2,LOC107746939,LOC107747616,LOC107704265,LOC107588532,LOC107700588,LOC107550629 coding upstream 80260 10328942 ~ 10335753 (+)
tmod2 tmod2,tmod3,LOC107700589,LOC107746940,LOC107747615,LOC107704266,LOC107550632,LOC108440576,LOC108264495 coding upstream 95365 10297497 ~ 10320648 (+)
bcl2l10 bcl2l10,LOC107747612,LOC107700593,LOC107588535,LOC107704269 coding upstream 201527 10209353 ~ 10214486 (+)
gnb5b gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270 coding upstream 206863 10196804 ~ 10209150 (+)
LOC122363031 LOC107692742,LOC107738533 coding downstream 318547 10744387 ~ 10761544 (+)
vwa7 vwa7,LOC107715138,LOC107679011,LOC107588552,LOC107711113,LOC107692747,LOC107557822 coding downstream 433973 10859813 ~ 10870796 (+)
LOC122362996 si:ch211-132b12.1,si:ch211-132b12.2,zgc:158427,zgc:174946,LOC107715134,LOC107679003,LOC107588539,LOC107572724,LOC107679008,LOC106581333 coding downstream 446475 10872315 ~ 10877836 (+)
LOC122362995 si:ch211-132b12.2,LOC107572724,LOC107679008,LOC107679003,LOC107715134,LOC107588539,LOC106581333 coding downstream 458757 10884597 ~ 10889401 (+)
LOC122362997 si:ch211-132b12.1,zgc:174946,zgc:158427,si:ch211-132b12.6,si:ch211-132b12.3,LOC107715134,LOC107679003,LOC107588539,LOC107572724 coding downstream 463646 10889486 ~ 10897062 (+)
G125369 NA non-coding upstream 6413 10409318 ~ 10409600 (+)
LOC122362497 LOC107700584,LOC107746936,LOC107588541 non-coding upstream 7197 10404414 ~ 10408816 (+)
G125367 LOC107588541,LOC107700584,LOC107746936 non-coding upstream 8625 10406970 ~ 10407388 (+)
G125359 NA non-coding upstream 52777 10362931 ~ 10363236 (+)
G125356 NA non-coding upstream 64258 10351418 ~ 10351755 (+)
LOC122362658 NA non-coding downstream 175284 10601124 ~ 10602846 (+)
G125470 LOC107715138,LOC107679011,LOC107588552,LOC107711113,LOC107557822,LOC107683099 non-coding downstream 360065 10785905 ~ 10787023 (+)
LOC122363043 NA non-coding downstream 419612 10845452 ~ 10849689 (+)
G125481 LOC107679019,LOC107711015,LOC107714456,LOC107692743,LOC107557844 non-coding downstream 472324 10898164 ~ 10920333 (+)
G125480 rasa2,LOC107566682,LOC107714449,LOC107679023,LOC107679004,LOC107710946,LOC107684605 non-coding downstream 510525 10936365 ~ 11044066 (+)
G125192 NA other upstream 1050525 9359436 ~ 9365488 (+)
LOC122362511 cmc2,LOC107711752 other upstream 1868290 8544699 ~ 8547723 (+)
G125041 atmin,LOC107719888,LOC107711756,LOC107567294,LOC107667974 other upstream 1879065 8176353 ~ 8536948 (+)
si:ch73-103b9.2 LOC107675000,LOC107667976,LOC107719884,LOC107711755,LOC107567296,LOC101883751 other upstream 1883941 8168865 ~ 8532072 (+)
LOC122362910 cmc2,LOC107711752 other upstream 2225626 8187532 ~ 8190387 (+)
sema6dl sema6dl,sema6d,LOC107588527,LOC107683673,LOC107557846,LOC107692740 other downstream 206637 10632477 ~ 10718085 (+)
G125461 ugt5c1,LOC107692742,LOC107738533 other downstream 399134 10824974 ~ 10837276 (+)
G125496 snrpd2,LOC106612977 other downstream 542245 10968085 ~ 10969767 (+)
ccnl1a ccnl1a,LOC107710830,LOC107563513,LOC107684610,LOC107691967,LOC107557837 other downstream 800273 11226113 ~ 11233814 (+)
selenot1b selt1b,LOC107710848,LOC107684611,LOC107557827,LOC108429894 other downstream 808491 11234331 ~ 11237147 (+)

Expression


Co-expression Network