LOC122362497 (LOC107700584,LOC107746936,LOC107588541)


Basic Information

Item Value
gene id LOC122362497
gene name LOC107700584,LOC107746936,LOC107588541
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 10404414 ~ 10408816 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU185092
ATTTTTCTTGAAGTTGTCCAGACTGAACTGATTCGGTTTGGGGAAGAATTCGGATCTGTGCATCCGACCCACATTTAGTATGATGTTTGTTCCTCTCTTCACTGTGTAGCCctcgatgacatcatcatccaGCGCCCGGCGCATGGTGAAGTCCACCACCGGATGGAAACGGAGCGACTCGTTGATGAAACTCTCCAGAATGTGTAACCTGGACAGATGTTGGAAATGACATGCTCATACCCAAGACGGTGTCCATTTCCTGCAGGATCTTTAACTCCACGTCTGGATTCTGTTTGAGCAACAGCAGCATGAAGAACAGGCTGATAGAAAGGGTGTCTGGAGCAGCGATCACCATCTCCAACACACACTGCCTGACGTTCTCAGCGCTCAGCTCCCCAAggctctaaacacacacacacacacacgcgcacacacacaggtcagtCAATTTCATACATGCTTCAATAGTGTGTGTG
>XR_006253125.1
CCAGTCTACCAAAAGATCTGTCCATGTTTCGTACATGTAGTTCATGTAAATATCGAGAAGGACATATGCTTTGAAGACAAGACAAGATACTAGTTCCAACAGTTATGTTGCAACACACAAGTTTTCTCTGCGCTCTGAAGGCATGACCGTCTCGGTGTGTTTGGTGACGGATGTTTTCCTGTTTTCCTGTTGGCGAGCATTGACATGGAGATCTCCGGACCGAGCAGCCctcgatgacatcatcatccaGCGCCCGGCGCATGGTGAAGTCCACCACCGGATGGAAACGGAGCGACTCGTTGATGAAACTCTCCAGAATGTGTAACCTGGACAGATGTTGGAAATGACATGCTCATACCCAAGACGGTGTCCATTTCCTGCAGGATCTTTAACTCCACGTCTGGATTCTGTTTGAGCAACAGCAGCATGAAGAACAGGCTGATAGAAAGGGTGTCTGGAGCAGCGATCAC
>XR_006253126.1
CCAGTCTACCAAAAGATCTGTCCATGTTTCGTACATGTAGTTCATGTAAATATCGAGAAGGACATATGCTTTGAAGACAAGACAAGATACTAGTTCCAACAGTTATGTTGCAACACACAAGTTTTCTCTGCGCTCTGAAGGCATGACCGTCTCGGTGTGTTTGGTGACGGATGTTTTCCTGTTTTCCTGTTGGCGAGCATTGACATGGAGATCTCCGGACCGAGCAGCCctcgatgacatcatcatccaGCGCCCGGCGCATGGTGAAGTCCACCACCGGATGGAAACGGAGCGACTCGTTGATGAAACTCTCCAGAATGTGTAACCTGGACAGATGATCTTTAACTCCACGTCTGGATTCTGTTTGAGCAACAGCAGCATGAAGAACAGGCTGATAGAAAGGGTGTCTGGAGCAGCGATCACCATCTCCAACACACACTGCCTGACGTTCTCAGCGCTCAGCTCCCCAAggctcta

Function

GO:

id name namespace
GO:0032355 response to estradiol biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185092 False 476 lncRNA 0.49 2 10408129 10408816
XR_006253125.1 False 470 lncRNA 0.48 4 10404414 10408692
XR_006253126.1 True 477 lncRNA 0.49 4 10404414 10408746

Neighbor

gene id symbol gene type direction distance location
acadl acadl coding upstream 43102 10352575 ~ 10361312 (+)
lysmd2 lysmd2,LOC107746939,LOC107747616,LOC107704265,LOC107588532,LOC107700588,LOC107550629 coding upstream 68661 10328942 ~ 10335753 (+)
tmod2 tmod2,tmod3,LOC107700589,LOC107746940,LOC107747615,LOC107704266,LOC107550632,LOC108440576,LOC108264495 coding upstream 83766 10297497 ~ 10320648 (+)
bcl2l10 bcl2l10,LOC107747612,LOC107700593,LOC107588535,LOC107704269 coding upstream 189928 10209353 ~ 10214486 (+)
gnb5b gnb5,gnb5b,LOC107700591,LOC107588534,LOC107704270 coding upstream 195264 10196804 ~ 10209150 (+)
LOC122363031 LOC107692742,LOC107738533 coding downstream 335571 10744387 ~ 10761544 (+)
vwa7 vwa7,LOC107715138,LOC107679011,LOC107588552,LOC107711113,LOC107692747,LOC107557822 coding downstream 450997 10859813 ~ 10870796 (+)
LOC122362996 si:ch211-132b12.1,si:ch211-132b12.2,zgc:158427,zgc:174946,LOC107715134,LOC107679003,LOC107588539,LOC107572724,LOC107679008,LOC106581333 coding downstream 463499 10872315 ~ 10877836 (+)
LOC122362995 si:ch211-132b12.2,LOC107572724,LOC107679008,LOC107679003,LOC107715134,LOC107588539,LOC106581333 coding downstream 475781 10884597 ~ 10889401 (+)
LOC122362997 si:ch211-132b12.1,zgc:174946,zgc:158427,si:ch211-132b12.6,si:ch211-132b12.3,LOC107715134,LOC107679003,LOC107588539,LOC107572724 coding downstream 480670 10889486 ~ 10897062 (+)
G125359 NA non-coding upstream 41178 10362931 ~ 10363236 (+)
G125356 NA non-coding upstream 52659 10351418 ~ 10351755 (+)
G125353 LOC107700587,LOC107746952,LOC107588544,LOC107588531,LOC107747623,LOC107704264 non-coding upstream 55718 10344769 ~ 10348696 (+)
G125352 NA non-coding upstream 60960 10341767 ~ 10343454 (+)
G125347 NA non-coding upstream 62829 10286727 ~ 10341585 (+)
G125369 NA non-coding downstream 502 10409318 ~ 10409600 (+)
LOC122362658 NA non-coding downstream 192308 10601124 ~ 10602846 (+)
G125470 LOC107715138,LOC107679011,LOC107588552,LOC107711113,LOC107557822,LOC107683099 non-coding downstream 377089 10785905 ~ 10787023 (+)
LOC122363043 NA non-coding downstream 436636 10845452 ~ 10849689 (+)
G125481 LOC107679019,LOC107711015,LOC107714456,LOC107692743,LOC107557844 non-coding downstream 489348 10898164 ~ 10920333 (+)
G125192 NA other upstream 1038926 9359436 ~ 9365488 (+)
LOC122362511 cmc2,LOC107711752 other upstream 1856691 8544699 ~ 8547723 (+)
G125041 atmin,LOC107719888,LOC107711756,LOC107567294,LOC107667974 other upstream 1867466 8176353 ~ 8536948 (+)
si:ch73-103b9.2 LOC107675000,LOC107667976,LOC107719884,LOC107711755,LOC107567296,LOC101883751 other upstream 1872342 8168865 ~ 8532072 (+)
gldn gldn,dmxl2,LOC107588556,LOC107700585,LOC107550630,LOC107704260,LOC107700583,LOC107746935,LOC107704254,LOC107550623 other downstream 7197 10416013 ~ 10425840 (+)
sema6dl sema6dl,sema6d,LOC107588527,LOC107683673,LOC107557846,LOC107692740 other downstream 223661 10632477 ~ 10718085 (+)
G125461 ugt5c1,LOC107692742,LOC107738533 other downstream 416158 10824974 ~ 10837276 (+)
G125496 snrpd2,LOC106612977 other downstream 559269 10968085 ~ 10969767 (+)
ccnl1a ccnl1a,LOC107710830,LOC107563513,LOC107684610,LOC107691967,LOC107557837 other downstream 817297 11226113 ~ 11233814 (+)

Expression


Co-expression Network