G125480 (rasa2,LOC107566682,LOC107714449,LOC107679023,LOC107679004,LOC107710946,LOC107684605)


Basic Information

Item Value
gene id G125480
gene name rasa2,LOC107566682,LOC107714449,LOC107679023,LOC107679004,LOC107710946,LOC107684605
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 10936365 ~ 11044066 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU185293
CAGGGGAAAGCATAAACCGCGGAGAAAATTTCAAGGAGTAAAAGTATTCCGAATAAACTGCTTTCGTAAGGAAACAACTTATCACATAATGAATCCACAGGCTTTCGGGCTATTCTTCAACCTGTTTGCCATTAAACCCTTTAATTTAACACTTAATGAAAGACCTGTTTTATAAGAGTACCGCAAAACAACTTTGCAACAGGTAAGACTGTTTTCCTCATTTCTCGTTCATTAAGCAATGTGATCGATTATAAGTTGATGTTTCATGTTTCTCCAACAGTAGAACAGCGGAGCTTGATATACGTCAATCGATTTGTGTGCTCCGTGTATATATTTACTGCATGGTTTTGGACTTTTTCTGCTTACCGTCGTGCTAGAATAGCGCTCATCTCTCCCATCaggcctcctcctcctcctcctcctcctcctcctcctcctcctcctcctccgctgGGCATAGACACACTGCTGCGGCTGCTTTCTGTTTTAGGAGGTGCTGCCACACTCGCTGCAGCACTGCCGCCTCCTCCTCCGCCACTACCAGCATCATCCTGCAGGAGGAAGCACCGATTCAATAACAGAAGCCAAAACAAATATCGCTAGCTGATGTATaaatgtgtcctatggtgtgacagaaaaatgtacaaaaacattaaagataaaCCTGCtttttgtaactttaaaaattaagatgcttttttttctcatgttatctGTATGTTAAGGTTtttgttgttacatttttgctgtcataTCACAGATCTTGTGAGTTTTTATGCATCACCTACGCACGTTAGCGCAAAACATCACCAGGCTACACATTTTAATCCTTGATCATGTTCGAAATTGTATCTTTGTGAACGGATTTCTCCATTATCAAAGTATGCAAGTTTAATAAGTGtttaacaacacatttttaaaaacgttaaaaGTTCAGTATACGTGTTCGTTCAACTTTTATTCATTCTCTGCTTTCTTCGACATCAAATGCtagttttatcatatttcttactatatgttgtttttcatttgtgcgTGATTCATAAGGAAATGTCATCAAAAGTTAATATCTCGCTCTGCCtctaaaaaaagaatttcattttcagttgATGTCAACAAGATTGTAAATGACGTTAACAGGAAGTGATTCGCTGCTTTGATATCTAGATATTCTCTTGTCACTCGCTGTCTCACCTTGGGCACTTTGCGGAGTTTGGCACCTGCCAGGGCAGCAGCGAGACCACCGCCACCTGGTCCTCCTCCCTCGCCTCCACCTCCTCCGGAAGAGGGCAGGTCTGGAGCGGTTAgaggagaagaaggagaagatTCGTTCGGTTTCTCTGTCACAGTCGATATCCAGTTGGATATTAGCCAACACTGTCCTATAAGACAAAGTCAGGCATCAAAAACAAGAACGTAACAACTGATCTGATCTGAATAAgcactaaaatgtaattgaaataatGAGATGTCTCACGCAGTGCATGGTTTGCAGCCAGGGGTGTTCTCATTGGCCTCCTTACAGCATAACCAGTATCCACCCACGTAAGCAGATGGGTGAAATGTGCTGAGCCTTCCCGGGTTACATCGGCTGACCTGACTCAGTACCTCGATCCAGCTGTTGGTCTCCACGCAGTTCCCCGCCTGCACGTACAGAGGCTTCTCTGAATGGATTACCTGAAACATCTGCAAAACAAAGAGGGAGGATATTACATATACGCTaaaagtcaaaagtttggagtaaTTACATTTCCAATTACATACCAAGGCTAATTCAGCCAAACAAACGCAGCCTTGGTGTTAAAATgattggaaaacatttttaaaaataatattggaATTACAAACCTTTTATCATAACCTTTTACTTTTAACATACTAAAAGTTTGCAGAAACTTATCCAAAAGTGAAACAAAATTagcaatttcatttttatgtttgtccCCTGTGCATTAATCCCATGACCTTTTTGTTGCTAGCGCCATGCTATAccagtataaaaaaacaatataaaaagacagataaacacacacacacacacacactcatctacTCACGTTTTTGCGGTTAAAGGCACTTTCTTCCAGTTTCTCGACACCAAGGATGTTTTTCACAGGAATGACGCAAAGCGCTTCTTTCCCTGTACAAAAATACGAAGATACATTTATCCATGCCGTTGAAACagaacaattaattaataattcacacTTTGCCAAAATTGACCACTTGTGGATATTGATGAACGGCACGCATCattaaatgtgcaataaacGTAAATACAGAGCCTAGACCGGTGGGACGAGTCTATTTTCGCCTACACAAATCAACCAACATCGAGGAAAATTGGTTCAGGCGAACATTAAATCTCAAAAGATAATCTGTAATGACCCGTGACTCGGTCTAGTCGGGCTGTATCCGTGGAGTTGATAGCCAACTTGCTGTGCCAATATTAACACACAGCCGTTTCTCAAGCACATTCTACACATTTGAAAAATTCCTGTTTTCATCTCCTCCGCTGACGTGCAGCATTTTGACCACAGAACAGCCAAAGTACACAGATGCTTGAGAACTAGAGCCACACACGCCACGTCAGCTCATCTTGTTCTATTCAATCAGTCTTCTTCCCGAACGTTGACCAGGTATGTACAACACCACAAGCAGATGGCTTTTAGCGTCCTAAGATAAAGGGCAAACATTAAAGATCGGTGGTTTcacatttaactgtaaattcTTCTGCTTTGGCATACGAAGACGCTTAAATCACAGCAGCAGAAAACTCTTAGCTGTAGTTTGGGGACAAAATTGTCCTCAAAagtgattaaaatatttcctttgagGGAACCGAGATCAAATTGATTCATAAAGTAAATCATGGTTTATGTCTACGTCTTCACTTTTATAGCAGGGGTAAAATGTGAGTAAGTGGCTCAAACCTAGTCTTTTAGTAAATGCTTAATCGCTGTAGACATGTATTTTCGCTGGATTTCAGTAGGCCTGTTTAACTGCTTTCTCAGATTTTACTCTTGTAAAAAGGATAAAAGTAAAAGGTTAAAAGGAAGGCTTGTTGTTACAATCCAATCACCCCAGACTGAAAGTGTATCAGGAATTCTCATCAGTATGAAATCAGAAGACGACAGGCTCCCCTGCCGAGTTTTAATTCATCCCTAGGTTTCTTCTTCTTGGATTCGTGGATAAAGACAACGTATACAGTTATGTTACTATCCCACgattacatacaaaataaaaaaaattgtatatgcatgtaatatatgtaagtgtactgtgtttattatgtaatataaatacacatatgcatgtatataactTTTAGAAAAATAGGTAATGTTCCACTTACTTGTGGAAGTAGTAGCAAAGCAAAACTTTTGCAACTTTTGTCTGTGGAGCCAAATGACCGCCGTAGCTCAACTGATTGTTTGTTAAATGATGAAACCCTTGTAGCATTTCTTGATTTCCTTTCCATTGAGATTTCCAACCGTTAAACCGTCCTAACAGGTCAGGTCGAGTTTAGCCAGTGAAAAACACCTTCGAACATCCATGACCGCCAGAGAACGGGTATCTGGAGGAAACTTACAAATGAAAGCTGCACGTCTTCAGAGGACAGTCCATCATTTAGTCCAGATGCTCAGTGGCCGTGAGTCTAGAAGATGACCCTCCATTGATCCAATAAGAGGAAATTAAACCATCGGTTATTAGCTTCTCTCCCTCTTTTAACTGTGACGTGAGCGCATTTGGTCAAAAGGCAGGGTCTACTAAAAATGCAACCTGAGCTCCCTGACGCGGAGATGAATTCTAAGCTCATGCTTTAAGAATAAATTCTAGAATACTCCTGCATAAATAATAACTGATTTTTACCGTATGGAGTCAGTTCTCCTTAATTTTAATGAGTGTCCTAGCAAAAAGTTGTGTAGAATCACATCCACTGGCATTTGTCtcgatacttttttttaatattacgccatctaatatttttaatggtttactCCACCCCAAATCTAAAATGCCATGAGAAAGGGATGCACCGTTtgcattcaaatcaaagcgtaAATATAAGCAC

Function

symbol description
rasa2 Is expressed in margin. Orthologous to human RASA2 (RAS p21 protein activator 2).

NR:

description
PREDICTED: ras GTPase-activating protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185293 True 4075 lncRNA 0.40 2 10936365 11044066

Neighbor

gene id symbol gene type direction distance location
LOC122362997 si:ch211-132b12.1,zgc:174946,zgc:158427,si:ch211-132b12.6,si:ch211-132b12.3,LOC107715134,LOC107679003,LOC107588539,LOC107572724 coding upstream 39303 10889486 ~ 10897062 (+)
LOC122362995 si:ch211-132b12.2,LOC107572724,LOC107679008,LOC107679003,LOC107715134,LOC107588539,LOC106581333 coding upstream 46964 10884597 ~ 10889401 (+)
LOC122362996 si:ch211-132b12.1,si:ch211-132b12.2,zgc:158427,zgc:174946,LOC107715134,LOC107679003,LOC107588539,LOC107572724,LOC107679008,LOC106581333 coding upstream 58529 10872315 ~ 10877836 (+)
vwa7 vwa7,LOC107715138,LOC107679011,LOC107588552,LOC107711113,LOC107692747,LOC107557822 coding upstream 65569 10859813 ~ 10870796 (+)
LOC122363031 LOC107692742,LOC107738533 coding upstream 174821 10744387 ~ 10761544 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 54288 11098354 ~ 11134641 (+)
veph1 veph1,LOC107563514,LOC107711033,LOC107679005 coding downstream 92985 11137051 ~ 11206596 (+)
ankrd67 si:ch211-203b8.6,LOC107684609,LOC107710859,LOC107691982,LOC107563505,LOC107714442 coding downstream 174472 11218538 ~ 11224508 (+)
tsen34 LOC107710838,LOC107684621,LOC107709810,LOC107563510,LOC107734988 coding downstream 193467 11237533 ~ 11240065 (+)
bcl7bb bcl7bb,LOC107557834,LOC107692047,LOC107711066,LOC107709815,LOC108429883 coding downstream 196561 11240627 ~ 11244692 (+)
G125481 LOC107679019,LOC107711015,LOC107714456,LOC107692743,LOC107557844 non-coding upstream 16032 10898164 ~ 10920333 (+)
LOC122363043 NA non-coding upstream 86676 10845452 ~ 10849689 (+)
G125470 LOC107715138,LOC107679011,LOC107588552,LOC107711113,LOC107557822,LOC107683099 non-coding upstream 149342 10785905 ~ 10787023 (+)
LOC122362658 NA non-coding upstream 333519 10601124 ~ 10602846 (+)
G125369 NA non-coding upstream 526765 10409318 ~ 10409600 (+)
G125540 NA non-coding downstream 254937 11299003 ~ 11299260 (+)
LOC122362586 NA non-coding downstream 263481 11307547 ~ 11309510 (+)
G125709 NA non-coding downstream 859393 11903459 ~ 11903992 (+)
G125714 LOC107568232,LOC107671620 non-coding downstream 994879 12038945 ~ 12039444 (+)
G125750 NA non-coding downstream 1349445 12393511 ~ 12394732 (+)
G125461 ugt5c1,LOC107692742,LOC107738533 other upstream 99089 10824974 ~ 10837276 (+)
sema6dl sema6dl,sema6d,LOC107588527,LOC107683673,LOC107557846,LOC107692740 other upstream 218280 10632477 ~ 10718085 (+)
gldn gldn,dmxl2,LOC107588556,LOC107700585,LOC107550630,LOC107704260,LOC107700583,LOC107746935,LOC107704254,LOC107550623 other upstream 510525 10416013 ~ 10425840 (+)
G125192 NA other upstream 1570877 9359436 ~ 9365488 (+)
LOC122362511 cmc2,LOC107711752 other upstream 2388642 8544699 ~ 8547723 (+)
ccnl1a ccnl1a,LOC107710830,LOC107563513,LOC107684610,LOC107691967,LOC107557837 other downstream 182047 11226113 ~ 11233814 (+)
selenot1b selt1b,LOC107710848,LOC107684611,LOC107557827,LOC108429894 other downstream 190265 11234331 ~ 11237147 (+)
trpc6b trpc6b,trpc6a,LOC107713306,LOC107691992,LOC108429885,LOC108264040 other downstream 286155 11330221 ~ 11345797 (+)
G125830 NA other downstream 1765384 12809450 ~ 12822781 (+)
G125836 NA other downstream 1836522 12880588 ~ 12884612 (+)

Expression


Co-expression Network