selenot1b (selt1b,LOC107710848,LOC107684611,LOC107557827,LOC108429894)


Basic Information

Item Value
gene id selenot1b
gene name selt1b,LOC107710848,LOC107684611,LOC107557827,LOC108429894
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 11234331 ~ 11237147 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU185364
GTGAAGTCAGAGCAGGGATTCCGCGAGCGGACTGTGCAGGATGGAAACGCGATGTTTATGGCTGTTACTGGTCTGCGTGCTGTCACTGAATCGTGCCAGGGCGGACAATGGCAGcgttaaaaagatgaaaatgcaATATACAGGAATGCCACTGCTGAAGTTTCAGATTTGTGTGTCCTGAGGGTACAGGCGGGTGTTTGAAGAGTACACTCGGGTTCTCAGCCAGAGGTACCCAGACATCCGCATCGAGGGAGAAAGCTTCCTTCCACAGCCTCTCTACAGacACGTAGCTTCCTTCTTCTCTGTCTTCAAACTTGCAGTGATTGGTTTAATCATCCTGGGCAAGGACCCTTTCACCTATTTCAACATGGAGACTCCGGGAATCTGGCTTTGGGCGCAAGAGAATAAGatATATGCCTGCATGATGGTGTTCTTCCTCAGCAACATGATAGAAAACCAGTGCATGTCCACTGGCGCCTTTGAAATCTCCCTTAATGACGTGCCTGTATGGTCCAAGCTGCAGTCGGGACACCTGCCCTCCATGCAGCAGCTGGTGCAGATCCTGGAGAATGAGATGAAGCTGAGTGCACACATGGACTCTCTCCCGCACAGACGGGCGTAGAGGTGCAGGAGCGAAACAGACTGGATGTGGCTTGTGAGTGATGCGAGgccctggtgtgtgtgtgagatggcGTTAATGAAGGTTTGCACTAAAGGCAGTGTGTCTGCTGGTGTGGACTGGATGTCCGGCTCTCTCTCGCTGCTCCGCGGGTCTCTCCGTACCCACAGCCCTACAGTCCATGGCTAGGAATTACGGAGAAAATTGAAGGGTTCGCTTGCAGATATTCTGCAGTCATCGACCAATTAAAACACACGCTGTTAAGTGCGTTTAAAGCGGTGTTAAACAGTGTTTACCTGTTTTTAGAGTGTGTGTAGTAGACTGCTGCATTAATGACTTCAGATTCTTGTAGTATCTGCAGAACTACACTTCTGTATATGATTTCtcgctcgtttttttttttttttatgctttcgtcatatgattttttttttgttgccaatttattaattacagtaatatttgCAGCAATTCTCTGTGTATGTTTAGACAGCGGCACTCGTTAAGAAATATAAACCGTTATGTAAATGTATCCGATGACTAAATATGTGCACATCATCAAGGATGCACTTtgatacatttagatttttgataatttgtaatgtttgtttttactgtttcgAATAAATTCGGTCAATGGACG
>TU185365
GTGAAGTCAGAGCAGGGATTCCGCGAGCGGACTGTGCAGGATGGAAACGCGATGTTTATGGCTGTTACTGGTCTGCGTGCTGTCACTGAATCGTGCCAGGGCGGACAATGGCAGcgttaaaaagatgaaaatgcaATATACAGGAATGCCACTGCTGAAGTTTCAGATTTGTGTGTCCTGAGGGTACAGGCGGGTGTTTGAAGAGTACACTCGGGTTCTCAGCCAGAGGTACCCAGACATCCGCATCGAGGGAGAAAGCTTCCTTCCACAGCCTCTCTACAGacACGTAGCTTCCTTCTTCTCTGTCTTCAAACTTGCAGTGATTGGTTTAATCATCCTGGGCAAGGACCCTTTCACCTATTTCAACATGGAGACTCCGGGAATCTGGCTTTGGGCGCAAGAGAATAAGatATATGCCTGCATGATGGTGTTCTTCCTCAGCAACATGATAGAAAACCAGTGCATGTCCACTGGCGCCTTTGAAATCTCCCTTAATGGTAAGACTGATGATAATTTACAGATGAAAGTCTTGCGTTTCCCGCATTTCAAGCGGTATACGTCGTGATTTCTTTTCCCCTCTGCGTGTATGTTAATGTTCGCAGACGTGCCTGTATGGTCCAAGCTGCAGTCGGGACACCTGCCCTCCATGCAGCAGCTGGTGCAGATCCTGGAGAATGAGATGAAGCTGAGTGCACACATGGACTCTCTCCCGCACAGACGGGCGTAGAGGTGCAGGAGCGAAACAGACTGGATGTGGCTTGTGAGTGATGCGAGgccctggtgtgtgtgtgagatggcGTTAATGAAGGTTTGCACTAAAGGCAGTGTGTCTGCTGGTGTGGACTGGATGTCCGGCTCTCTCTCGCTGCTCCGCGGGTCTCTCCGTACCCACAGCCCTACAGTCCATGGCTAGGAATTACGGAGAAAATTGAAGGGTTCGCTTGCAGATATTCTGCAGTCATCGACCAATTAAAACACACGCTGTTAAGTGCGTTTAAAGCGGTGTTAAACAGTGTTTACCTGTTTTTAGAGTGTGTGTAGTAGACTGCTGCATTAATGACTTCAGATTCTTGTAGTATCTGCAGAACTACACTTCTGTATATGATTTCtcgctcgtttttttttttttttatgctttcgtcatatgattttttttttgttgccaatttattaattacagtaatatttgCAGCAATTCTCTGTGTATGTTTAGACAGCGGCACTCGTTAAGAAATATAAACCGTTATGTAAATGTATCCGATGACTAAATATGTGCACATCATCAAGGATGCACTTtgatacatttagatttttgataatttgtaatgtttgtttttactgtttcgAATAAATTCGGTCAATGGACG
>XM_043216907.1
TTCTGCGTCTATTTCCGGGTGAAGTCAGAGCAGGGATTCCGCGAGCGGACTGTGCAGGATGGAAACGCGATGTTTATGGCTGTTACTGGTCTGCGTGCTGTCACTGAATCGTGCCAGGGCGGACAATGGCAGcgttaaaaagatgaaaatgcaATATACAGGAATGCCACTGCTGAAGTTTCAGATTTGTGTGTCCTGAGGGTACAGGCGGGTGTTTGAAGAGTACACTCGGGTTCTCAGCCAGAGGTACCCAGACATCCGCATCGAGGGAGAAAGCTTCCTTCCACAGCCTCTCTACAGacACGTAGCTTCCTTCTTCTCTGTCTTCAAACTTGCAGTGATTGGTTTAATCATCCTGGGCAAGGACCCTTTCACCTATTTCAACATGGAGACTCCGGGAATCTGGCTTTGGGCGCAAGAGAATAAGatATATGCCTGCATGATGGTGTTCTTCCTCAGCAACATGATAGAAAACCAGTGCATGTCCACTGGCGCCTTTGAAATCTCCCTTAATGACGTGCCTGTATGGTCCAAGCTGCAGTCGGGACACCTGCCCTCCATGCAGCAGCTGGTGCAGATCCTGGAGAATGAGATGAAGCTGAGTGCACACATGGACTCTCTCCCGCACAGACGGGCGTAGAGGTGCAGGAGCGAAACAGACTGGATGTGGCTTGTGAGTGATGCGAGgccctggtgtgtgtgtgagatggcGTTAATGAAGGTTTGCACTAAAGGCAGTGTGTCTGCTGGTGTGGACTGGATGTCCGGCTCTCTCTCGCTGCTCCGCGGGTCTCTCCGTACCCACAGCCCTACAGTCCATGGCTAGGAATTACGGAGAAAATTGAAGGGTTCGCTTGCAGATATTCTGCAGTCATCGACCAATTAAAACACACGCTGTTAAGTGCGTTTAAAGCGGTGTTAAACAGTGTTTACCTGTTTTTAGAGTGTGTGTAGTAGACTGCTGCATTAATGACTTCAGATTCTTGTAGTATCTGCAGAACTACACTTCTGTATATGATTTCtcgctcgtttttttttttttttatgctttcgtcatatgattttttttttgttgccaatttattaattacagtaatatttgCAGCAATTCTCTGTGTATGTTTAGACAGCGGCACTCGTTAAGAAATATAAACCGTTATGTAAATGTATCCGATGACTAAATATGTGCACATCATCAAGGATGCACTTtgatacatttagatttttgataatttgtaatgtttgtttttactgtttcgAATAAATTCGGTCAATGGACGTTTAAA
>XR_006246968.1
TTCTGCGTCTATTTCCGGGTGAAGTCAGAGCAGGGATTCCGCGAGCGGACTGTGCAGGATGGAAACGCGATGTTTATGGCTGTTACTGGTCTGCGTGCTGTCACTGAATCGTGCCAGGGCGGACAATGGCAGcgttaaaaagatgaaaatgcaATATACAGGAATGCCACTGCTGAAGTTTCAGATTTGTGTGTCCTGAGGGTACAGGCGGGTGTTTGAAGAGTACACTCGGGTTCTCAGCCAGAGGTACCCAGACATCCGCATCGAGGGAGAAAGCTTCCTTCCACAGCCTCTCTACAGacACGTAGCTTCCTTCTTCTCTGTCTTCAAACTTGCAGTGATTGGTTTAATCATCCTGGGCAAGGACCCTTTCACCTATTTCAACATGGAGACTCCGGGAATCTGGCTTTGGGCGCAAGAGAATAAGatATATGCCTGCATGATGGTGTTCTTCCTCAGCAACATGATAGAAAACCAGTGCATGTCCACTGGCGCCTTTGAAATCTCCCTTAATGACGTGCCTGTATGGTCCAAGCTGCAGTCGGGACACCTGCCCTCCATGCAGCAGCTGGTGCAGATCCTGGAGAATGAGATGAAGCTGAGTGCACACATGGACTCTCTCCCGCACAGACGGGCGTAGAGGTGCAGGAGCGAAACAGACTGGATGTGGCTTGTGGGTATCCCACTGGGGTTTCGTGAGTGATGCGAGgccctggtgtgtgtgtgagatggcGTTAATGAAGGTTTGCACTAAAGGCAGTGTGTCTGCTGGTGTGGACTGGATGTCCGGCTCTCTCTCGCTGCTCCGCGGGTCTCTCCGTACCCACAGCCCTACAGTCCATGGCTAGGAATTACGGAGAAAATTGAAGGGTTCGCTTGCAGATATTCTGCAGTCATCGACCAATTAAAACACACGCTGTTAAGTGCGTTTAAAGCGGTGTTAAACAGTGTTTACCTGTTTTTAGAGTGTGTGTAGTAGACTGCTGCATTAATGACTTCAGATTCTTGTAGTATCTGCAGAACTACACTTCTGTATATGATTTCtcgctcgtttttttttttttttatgctttcgtcatatgattttttttttgttgccaatttattaattacagtaatatttgCAGCAATTCTCTGTGTATGTTTAGACAGCGGCACTCGTTAAGAAATATAAACCGTTATGTAAATGTATCCGATGACTAAATATGTGCACATCATCAAGGATGCACTTtgatacatttagatttttgataatttgtaatgtttgtttttactgtttcgAATAAATTCGGTCAATGGACGTTTAAA

Function

NR:

description
PREDICTED: selenoprotein T1b-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0008430 selenium binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185364 False 1262 TUCP 0.46 6 11234349 11237141
TU185365 True 1367 lncRNA 0.46 5 11234349 11237141
XM_043216907.1 False 1286 mRNA 0.46 6 11234331 11237147
XR_006246968.1 False 1308 transcript 0.46 6 11234331 11237147

Neighbor

gene id symbol gene type direction distance location
ankrd67 si:ch211-203b8.6,LOC107684609,LOC107710859,LOC107691982,LOC107563505,LOC107714442 coding upstream 9823 11218538 ~ 11224508 (+)
veph1 veph1,LOC107563514,LOC107711033,LOC107679005 coding upstream 27735 11137051 ~ 11206596 (+)
trip12 trip12,LOC107679016,LOC107710892 coding upstream 99690 11098354 ~ 11134641 (+)
LOC122362532 LOC107711073,LOC107679025,LOC107714437,LOC107566685,LOC107684602,LOC100332250 coding upstream 205602 11007590 ~ 11028729 (+)
LOC122362997 si:ch211-132b12.1,zgc:174946,zgc:158427,si:ch211-132b12.6,si:ch211-132b12.3,LOC107715134,LOC107679003,LOC107588539,LOC107572724 coding upstream 337269 10889486 ~ 10897062 (+)
tsen34 LOC107710838,LOC107684621,LOC107709810,LOC107563510,LOC107734988 coding downstream 386 11237533 ~ 11240065 (+)
bcl7bb bcl7bb,LOC107557834,LOC107692047,LOC107711066,LOC107709815,LOC108429883 coding downstream 3480 11240627 ~ 11244692 (+)
baz1b baz1b,LOC107684612,LOC107709818,LOC107714438 coding downstream 8174 11245321 ~ 11262070 (+)
pgr LOC107563516,LOC107691935,LOC107732778,LOC107709819,LOC107684613 coding downstream 114665 11351812 ~ 11360805 (+)
LOC122323085 LOC107691900,LOC107574923,LOC107715548 coding downstream 661112 11898259 ~ 11901956 (+)
G125480 rasa2,LOC107566682,LOC107714449,LOC107679023,LOC107679004,LOC107710946,LOC107684605 non-coding upstream 190265 10936365 ~ 11044066 (+)
G125481 LOC107679019,LOC107711015,LOC107714456,LOC107692743,LOC107557844 non-coding upstream 313998 10898164 ~ 10920333 (+)
LOC122363043 NA non-coding upstream 384642 10845452 ~ 10849689 (+)
G125470 LOC107715138,LOC107679011,LOC107588552,LOC107711113,LOC107557822,LOC107683099 non-coding upstream 447308 10785905 ~ 10787023 (+)
LOC122362658 NA non-coding upstream 631485 10601124 ~ 10602846 (+)
G125540 NA non-coding downstream 61856 11299003 ~ 11299260 (+)
LOC122362586 NA non-coding downstream 70400 11307547 ~ 11309510 (+)
G125709 NA non-coding downstream 666312 11903459 ~ 11903992 (+)
G125714 LOC107568232,LOC107671620 non-coding downstream 801798 12038945 ~ 12039444 (+)
G125750 NA non-coding downstream 1156364 12393511 ~ 12394732 (+)
ccnl1a ccnl1a,LOC107710830,LOC107563513,LOC107684610,LOC107691967,LOC107557837 other upstream 517 11226113 ~ 11233814 (+)
G125496 snrpd2,LOC106612977 other upstream 264564 10968085 ~ 10969767 (+)
G125461 ugt5c1,LOC107692742,LOC107738533 other upstream 397055 10824974 ~ 10837276 (+)
sema6dl sema6dl,sema6d,LOC107588527,LOC107683673,LOC107557846,LOC107692740 other upstream 516246 10632477 ~ 10718085 (+)
gldn gldn,dmxl2,LOC107588556,LOC107700585,LOC107550630,LOC107704260,LOC107700583,LOC107746935,LOC107704254,LOC107550623 other upstream 808491 10416013 ~ 10425840 (+)
trpc6b trpc6b,trpc6a,LOC107713306,LOC107691992,LOC108429885,LOC108264040 other downstream 93074 11330221 ~ 11345797 (+)
G125830 NA other downstream 1572303 12809450 ~ 12822781 (+)
G125836 NA other downstream 1643441 12880588 ~ 12884612 (+)
napab napab,LOC107668964,LOC107758075,LOC107670630,LOC107714540,LOC107565089,LOC108413256 other downstream 1680079 12917226 ~ 12925468 (+)
glb1l2 glb1l2,si:dkey-224e22.2,LOC107554970 other downstream 1709694 12946841 ~ 12955945 (+)

Expression


Co-expression Network