trpc6b (trpc6b,trpc6a,LOC107713306,LOC107691992,LOC108429885,LOC108264040)


Basic Information

Item Value
gene id trpc6b
gene name trpc6b,trpc6a,LOC107713306,LOC107691992,LOC108429885,LOC108264040
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 11330221 ~ 11345797 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU185388
TTGAAGTTGCTGACTTTGTAAATCTATCATATTTTATCATAATATGATTGTTGTTTAAGAGCCATGGTTTactacaaatgttttattaaccctatttattgattcataatttattgtgtGAAGTCTGAAAGTTAAAAGATGTCAGTCTTTCTGCATAAACAATggtttatttctaataatatatatatatatattgtgctttCATCTTGTTTGTCTTGTATGCACTAAACCCTAATAAGTTCACTACACTCATTTACTGTAACGAATTCTTGTAATCCCTCATTTTGGTCATCAAAATTCAGACACCAGAGGTTATTTTCGTTTCACTATTTGTAGAACCACACAGAGGTGCTGTTGCGTTGGTTGAACCCACGGGGACCGGagtcacctttatttttgttttgtattattattccCCCACAAAACTACTTAAAAGCACCATTTTAGCCGGCAGCatacaaaagcattgaaatgttTACAATAAGTATCCATTTGTTTAATAcacaacatttttgaaaaggcTCTTGACCCAAGAACATAGCTATACCTGTTCAAATCTTCCTTTGGTTTGACTTTGCTTGAATATATCAGTGTGGTTTTATAGTGTTCACCATTTACAAGCAGCCATTAAAAATATGCCATTTTCTCCAAacatgtattattcattttcagGTGATGTATAATTGAGGGAATGTGCGATTAAATCctttaaagtgaaaacaaaacaaaaaacttaagACATTCTTTcaacacaaactaaaatattttagaggaAAACTGAGCTTTCTGAtgctgcatagacagcaatgcaagtTAAAAATGGTCCCTGGCCCAAAGACATATTAAAGacactgttaaaataatcaATGCAACATCAGTGGTTCTACCATGATTTTATGAAActttaagaatatattttgcACGCAAAGAACTAAattaccaagcttgaaagagccatgatacatttttaaaaacttttgactgtgttcgtctgaaagaagaaagtcatatacacctaggatggcttcggggggAGTAAAATACAGGGTAATataaatttttgggtaaactttaCCTTTAA
>XM_043265135.1
GTGTTTTATATGTTGTGTgcaccaaaaacaaacaatcaaacaaatacaaactagcatttattcactttttccCCCTCATACTCATGCGTCCTTGTAAAGCTAAGTTatcataattgtattattttcagtAGCCTTTGACAATTGCTAGTGCCCATTAGGGGGCGACCTGctccacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattatttaaaatatttatctcaGCTCAGATACAACGTTTCAAATCGTACAGTAATCTTCTTTAAAATCCCCTcatcaaactaaaaaaagtcaCACCCTGCCTCCCAACGGAGATACCATCTACACTATGCGCCCTAAATAGTATTGAAAATGACTAGTATCATCTAGAATTTAGGATGGATAGTATGCACATCGATCGGTCTCTACATTATAGCCGTGACGTCATCACACATTTGATTAGGGGGACACACTTAATAAGCTTCCTGAACTACGCGCGTGTAGTCCTGTGGACCAGACCGACACCATAGTTCgcattttaattaagaaaacaaGACCGAGGAGAATTGCACTTAACTTTTGCGCGTGCACATCCGTTCCTGAGGTGAGCGGCAGTCTCGTGCGCATCAGCGGCGCTCAGAGATTCATGAAGACAGCCGCAGTCCGATGTCCACTGATAACGCTTCTGTTAAACACACTTCTGCCCATCAACGGATGAACGCCGACTTTGAAAAGTATCCTTTACCACGGTATTGCAAGAGGTGGAGCAACGATGACCTTCAAAGGCATGCACTGGCTAAGAGCCGCCGCATGGCTATGCGGAGACCGGCCTACATGTTTAATGCCCGTTACAATAGTCTATCGCCAACTGAAGAGCGTTTCCTAGAGGCGGCAGAGTATGGAAATATCCCTGTCATCCGTAGGATGCTAGAAGAACTCCCAGACCTTAATGTCAACTGTGTGGACTACATGGGCCAGAATGCATTGCAGCTTGCGGTTGCCAACGAGCACCTCGAAGTGACTGAACTCTTGCTGAGGAAAGAGAACCTGGCCAGGATTGGTGACGCTTTGCTTTTAGCCATAAGTAAAGGCTACATTCGTATTGTGGAAGCCATTTTGGGCCACCAAGCCTTTGCTGACACATCTAAACTCGCTAGCAGCCCCCTCCAGGCAGAGACGCAAGGCGATTTCTTCGCCTATGACGAGGATGGCACTCGTTTTTCCCATGATATTACACCCATTATACTAGCTTCTCATTGCCACGAATACGAGATCGTGCACATTCTGCTAAGGAAGGGCGCCCGCATTGCACGCCCACATGACTACTTTTGCAAATGCAACAGCTGCCTCTATCACCAGAGGCACGACTCTTTTAGCCATTCACGTTCAAGAATCAATGCCTACAAAGGGTTGGCAAGCCCTGCCTACCTTTCCCTGTCCAGTGAGGATCCAGTACTGACTGCTTTGGAGCTCAGCAATGAACTAGCTGTACTAGCCAACATAGAAAAAGAGTTCAAGaatgaTTATAAGAAGCTGTCTATGCAATGCAAGGATTTTGTAGTTGGACTTCTGGATCTGTGTCGGAATACAGAGGAGGTGGAAGCCATTTTAAATGGAGACACAGAGGCAGGTGGCCACTGTGACAAGGGTGGCAGGCCTGATCTAGTTCGATTAAAACTGGCCATCAAATACGAGCTAAAAAAGTTTGTAGCCCATCCAAACTGCCAACAGCAGCTTTTGTCCATATGGTATGAGAACCTGTCAGGGCTCAGGCAGCAAACCACAGCTGTCAAGTTGCTGGTGGTTCTGGGGGTGGTGGTTGGACTTCCCATCCTGGCCTTACTGTACTGGATAGCACCCTCAAGCAAGTTGGGGAAGATCATCCGTggtccttttttaaaatttgtggcACATGCAGCTTCTTTCACAATCTTTCTTGGCCTTCTCATTATGAACGCTGCTGACCGTTTTGAAGGGACATCTCTCTTACCAAATATGACCATCCATGACCACCCTTCCCAATTGTTCCGCATGAAGACCACCCCTTTCACCTGGATGGAAATGCTGATCATTTCTTGGGTCGTAGGAATGATTTGGGCTGAATGTAAAGAGATATGGTCTCAGGGTCCTCGGGAATATCTGCTGGAGCCTTGGAATTTGCTGGACTTCGGCATGCTGGCCATTTTTGTGACTTCATTTATTGCTAGATTTATGGCATTTTGGCATGCAAATGTTGCACAGAATTATGTGGACAAGCACTACACAGATCTATCAAACATTACCTTGCCCCTTGAGATAGAATACTATCGTCTTGcTCGTGTCCACTGGGTTCCTTCAGACCCTCAGCTGATCTCCGAGGGCCTTTATGCCATCGCAGTGGTTCTGAGCTTCTCTCGGATTGCGTACATCCTACCTGCGAACGAGAGCTTTGGGCCCTTGCAGATCTCTCTGGGCAGGACTGTAAAAGACATATTTAAATTCATGGTGATCTTCATAATGGTGTTTGTGGCCTTCATGATTGGAATGTTTAACCTCTACTCATACTATCGCGGAGCGAAGCAGAACGGTGCCTTCACAACTGTTGAGGAAAGCTTTAAAACTTTATTCTGGGCTATTTTTGGACTTTCTGAGGTCAAGTCTGTCGTCATCAACAACGGGCACAAATTCATTGAGAATATTGGCTATGTCCTTTACGGGGTCTACAACGTTACCATGGTTATCGTCTTACTCAACATGCTCATCGCCATGATCAACAACTCATTTCAGGAAATTGAGGATGATGCGGATGTGGAGTGGAAGTTTGCCAGGGCTAAGTTGTGGTTTTCGTACTTTGAGGAAGGAGGGACGCTGCCTGTGCCCTTTAATCTCATCCCCAGCCCAAAATCAGTCATCAGCCTGGCTATCAAACTCAAACAGCTCCTGCTAATACCTCTTCACAGACACAAAGAGGACCTGAAGGAGGACACTGAGCTCAATGAGtcgGGCAAACAAAAAGAATCCAGTGAGAAGAATTCACCTCATACAAGTCGTTACCAGAGGATCATGAAACGGCTCATCAAACGATATGTGATCAAAGCACAGACTGACAAAGAAGGAGATGAAGTAAATGAAGGGGAACTAAAAGAGATCAAGCAGGACATCTCAAGTTTACGCTATGAGCTGCTGGAGGAGAAATCTCGTCAGACAGAGGAGCTAGCAGAACTGGTCAGGAGACTGGGAGAGAGACTAGCCGGTCAACAGAACCTGTAATTAACACTCTTTTAATTATTCTCAGTGGCCATTCTCATTAGGTTGTCAGGAATAcactacattaaataattttctctttgttttatttaaaatagcaaaaataaaatgaaatataattacttgaataattcattactatatatttaatgaCATATCAGAACTGGGGTgctaaattcattaaaatcacaCACTTAATCATACTAAAATggcttaattttctttttttttcctatttgttTTTGGGGCGTAAAATCGTCTATATAGCTAGCCTGACCAACTAGCAGTTAGCCGgaagatttttatgtttttatgcagctgACTTAAAACAAAGTTTAGTTTGACATTCTGCTAACCGTAAGTAACTTCGCATCTACGCATCACCTAGCAGtaattagagtattagtagactgtctgcttaatatcctTTAACACTTTAGTTTGATGGATCCACAACATATcactatcagaaactttacaagtatatgtcaacctattctactaaccctaaacctaccctaacagtctattGCTAGTTACTACATGTGTATTAATGAAAATTAGTTAACATGTAGTTGACATGTAATTACAGTTACATATAGTTAGACCGTCTAAAGTggactttaaaaataaagtgtaaccgaCGTAAATATCAGTCTTAAagaatacatatttattgttcAGTCGACCCCGGAACAATTTTTGATAGGGAGTGTCAGTTTTCTCTGTTGCATTACTCTTTTCTCAAAATTAAGACTAGTTTTATAAGCAAGGTTTCCTCTGGAGAGCAGTGATCCAGCAAAAAAGAAGCTgatattaaattaagtaaatttcaaaatgacttttttagtCATGTTTTTGGTACTGTTTGCCATTGTGCTGCCATGCTGTGTCATAATCTAAATATGCTATGTTAAACACAGGAAACTACACAGGAACTACACAATCCAGAGACATAGATGTTGTTTGAATGAATTGTATTTGATTTCATCATGTTCTGTTTTTTACTGAAGCTGTGCACAGTAGAGCCAAACCTATTTAAAAGCACCAACCTCAGTCTGAGAACTAATGTCACTGCAAATGTGTAGTTACTGTGTTTTTACGTTGTTATTGAAGTTGCTGACTTTGTAAATCTATCATATTTTATCATAATATGATTGTTGTTTAAGAGCCATGGTTTactacaaatgttttattaaccctatttattgattcataatttattgtgtGAAGTCTGAAAGTTAAAAGATGTCAGTCTTTCTGCATAAACAATggtttatttctaataatatatatatatatattgtgctttCATCTTGTTTGTCTTGTATGCACTAAACCCTAATAAGTTCACTACACTCATTTACTGTAACGAATTCTTGTAATCCCTCATTTTGGTCATCAAAATTCAGACACCAGAGGTTATTTTCGTTTCACTATTTGTAGAACCACACAGAGGTGCTGTTGCGTTGGTTGAACCCACGGGGACCGGagtcacctttatttttgttttgtattattattccCCCACAAAACTACTTAAAAGCACCATTTTAGCCGGCAGCatacaaaagcattgaaatgttTACAATAAGTATCCATTTGTTTAATAcacaacatttttgaaaaggcTCTTGACCCAAGAACATAGCTATACCTGTTCAAATCTTCCTTTGGTTTGACTTTGCTTGAATATATCAGTGTGGTTTTATAGTGTTCACCATTTACAAGCAGCCATTAAAAATATGCCATTTTCTCCAAacatgtattattcattttcagGTGATGTATAATTGAGGGAATGTGCGATTAAATCctttaaagtgaaaacaaaacaaaaaacttaagACATTCTTTcaacacaaactaaaatattttagaggaAAACTGAGCTTTCTGAtgctgcatagacagcaatgcaagtTAAAAATGGTCCCTGGCCCAAAGACATATTAAAGacactgttaaaataatcaATGCAACATCAGTGGTTCTACCATGATTTTATGAAActttaagaatatattttgcACGCAAAGAACTAAattaccaagcttgaaagagccatgatacatttttaaaaacttttgactgtgttcgtctgaaagaagaaagtcatatacacctaggatggcttcggggggAGTAAAATACAGGGTAATataaatttttgggtaaactttaCCTTTAATGTTGAACCACTGAGGTcgcatggactattttaacactgTCCTTCTGGActtgggaacatttcagttgcattatTATCAATGCAGTGTCAGAAAGCTCAAATCAAAATTACGTAAtttttgttctgaagatgaaccaAACTATTAAAGTGTGACTGTTGGACAATCGAGTGGTTTGTTGTCAATAACAGTCAGAAAGGTTACAAAAAATGTGACTAAAAGTTACAAATTACCATCAAAAGATCTGCAAGGACTTGGGTGTGAAACCACCAGGAACTTATTAGCCTCCAGTGATACAATTTTTCACTGAAGGACTCAGGCTCTTGAGCCCTAGTTAACAAACATCACAAACTGCAGCATGAAAACCACTTTTTTGAGCTAGTTTTAACCTTTTGGTTTATagacaaactaaaatgaaatccCAAAACTACAACCAGATTCTTCTTCAAACGTGTACAAGATAAAGTCAGCTGCATTTAGGAAAGCTATGATCTTTGTGCATGACAATGCTCCATTAGATGTAACCAAGCGTTCTACCATTTTGCTTGCCAGAAAATGATACAAAGAAGACAAAATAGTTGCCAGGCCTAAACACAGTGCCAACACACTAAAACACTGCAAGTTCAAGATGTTTCCTCCTGTGAAACCTGTAGCTGGTTTCTTTGTAATTCTGTTAAACCTGGGTACagtattttaaacacacacaattgtTATAATATTCATCCTAGAGGTTTCTCTAATAGACGTCTATCACAACACATAGGCTATTTTAAATTCTGGTCTCAAGGTAAGTGGCAGAGATGTTACACCATAGTTCAACCTGACCTCTCGAGAGCCTCACACCTTCCCCCGCCATACAGATATAATTTGCCAGGTGCTTTCTCTGCCTAGAAATGAGTCAGAAATAGACAGCAGAGGTGAAAAGCTTTTATCAGTATTGGTTGACTTGACTACTAGTGCACTGACCTCAATAACAGCTTGCTTCACtgcattcattaaattatatcCAAACATGAGTAGCGGTTTTGTATCATTGTGAGTTCTTTTTCCTGCTAATCGCACTGTACGTTATGCAACTTCttagactgctgcttctcaaaaaaataaatacatggacAAGAAAA

Function

symbol description
trpc6b Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Predicted to be involved in metal ion transport; regulation of cytosolic calcium ion concentration; and single fertilization. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in trigeminal motor nucleus. Human ortholog(s) of this gene implicated in chronic fatigue syndrome; focal segmental glomerulosclerosis; focal segmental glomerulosclerosis 2; and nephrotic syndrome type 2. Orthologous to human TRPC6 (transient receptor potential cation channel subfamily C member 6).
trpc6a Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Predicted to be involved in metal ion transport; regulation of cytosolic calcium ion concentration; and single fertilization. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of cation channel complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; gut; integument; keratinocyte; and pectoral fin. Human ortholog(s) of this gene implicated in chronic fatigue syndrome; focal segmental glomerulosclerosis; focal segmental glomerulosclerosis 2; and nephrotic syndrome type 2. Orthologous to human TRPC6 (transient receptor potential cation channel subfamily C member 6).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005262 calcium channel activity molecular_function

KEGG:

id description
K04969 TRPC6; transient receptor potential cation channel subfamily C member 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU185388 False 1081 lncRNA 0.32 1 11343595 11344675
XM_043265135.1 True 6569 mRNA 0.40 12 11330221 11345797

Neighbor

gene id symbol gene type direction distance location
baz1b baz1b,LOC107684612,LOC107709818,LOC107714438 coding upstream 68151 11245321 ~ 11262070 (+)
bcl7bb bcl7bb,LOC107557834,LOC107692047,LOC107711066,LOC107709815,LOC108429883 coding upstream 85529 11240627 ~ 11244692 (+)
tsen34 LOC107710838,LOC107684621,LOC107709810,LOC107563510,LOC107734988 coding upstream 90156 11237533 ~ 11240065 (+)
ankrd67 si:ch211-203b8.6,LOC107684609,LOC107710859,LOC107691982,LOC107563505,LOC107714442 coding upstream 105713 11218538 ~ 11224508 (+)
veph1 veph1,LOC107563514,LOC107711033,LOC107679005 coding upstream 123625 11137051 ~ 11206596 (+)
pgr LOC107563516,LOC107691935,LOC107732778,LOC107709819,LOC107684613 coding downstream 6015 11351812 ~ 11360805 (+)
LOC122323085 LOC107691900,LOC107574923,LOC107715548 coding downstream 552462 11898259 ~ 11901956 (+)
nectin1b nectin1,pvrl1b,LOC107670612,LOC107691861,LOC107563312,LOC107758086,LOC107561861 coding downstream 843667 12189464 ~ 12379252 (+)
LOC122362670 LOC107691836,LOC107758058,LOC107578181,LOC107572720,LOC107670622,LOC107714531 coding downstream 1246270 12592067 ~ 12595389 (+)
st14a LOC107758079,LOC107668533,LOC107554966,LOC107714535,LOC107670627 coding downstream 1508363 12854160 ~ 12867723 (+)
LOC122362586 NA non-coding upstream 20711 11307547 ~ 11309510 (+)
G125540 NA non-coding upstream 30961 11299003 ~ 11299260 (+)
G125480 rasa2,LOC107566682,LOC107714449,LOC107679023,LOC107679004,LOC107710946,LOC107684605 non-coding upstream 286155 10936365 ~ 11044066 (+)
G125481 LOC107679019,LOC107711015,LOC107714456,LOC107692743,LOC107557844 non-coding upstream 409888 10898164 ~ 10920333 (+)
LOC122363043 NA non-coding upstream 480532 10845452 ~ 10849689 (+)
G125709 NA non-coding downstream 557662 11903459 ~ 11903992 (+)
G125714 LOC107568232,LOC107671620 non-coding downstream 693148 12038945 ~ 12039444 (+)
G125750 NA non-coding downstream 1047714 12393511 ~ 12394732 (+)
G125753 NA non-coding downstream 1066068 12411865 ~ 12412245 (+)
G125760 NA non-coding downstream 1233928 12579725 ~ 12589944 (+)
selenot1b selt1b,LOC107710848,LOC107684611,LOC107557827,LOC108429894 other upstream 93074 11234331 ~ 11237147 (+)
ccnl1a ccnl1a,LOC107710830,LOC107563513,LOC107684610,LOC107691967,LOC107557837 other upstream 96407 11226113 ~ 11233814 (+)
G125496 snrpd2,LOC106612977 other upstream 360454 10968085 ~ 10969767 (+)
G125461 ugt5c1,LOC107692742,LOC107738533 other upstream 492945 10824974 ~ 10837276 (+)
sema6dl sema6dl,sema6d,LOC107588527,LOC107683673,LOC107557846,LOC107692740 other upstream 612136 10632477 ~ 10718085 (+)
G125830 NA other downstream 1463653 12809450 ~ 12822781 (+)
G125836 NA other downstream 1534791 12880588 ~ 12884612 (+)
napab napab,LOC107668964,LOC107758075,LOC107670630,LOC107714540,LOC107565089,LOC108413256 other downstream 1571429 12917226 ~ 12925468 (+)
glb1l2 glb1l2,si:dkey-224e22.2,LOC107554970 other downstream 1601044 12946841 ~ 12955945 (+)
LOC122362547 LOC107672480,LOC107758042,LOC107554971 other downstream 1870687 13216484 ~ 13222148 (+)

Expression


Co-expression Network