G125855 (si:ch211-71n6.4,LOC107758068,LOC107753016,LOC107670624,LOC107578946,LOC105902995)


Basic Information

Item Value
gene id G125855
gene name si:ch211-71n6.4,LOC107758068,LOC107753016,LOC107670624,LOC107578946,LOC105902995
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 13009874 ~ 13012900 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU185840
AGGAGATGGACAGCAGTCCTGAAATAGCTGAACTGGATAGGTACGGGCTTTACCTGAGGAGTTGGTGGGAGAGCCTTCCCTGAGCATCTCCAGAGCCATGAAGCCGAAAGCATTGAGCCTGTAATTCAGACTGACGTACACCATCTGCGTGCGGGCCGCCAGCTCTTCGGTGGGCGAGTATCCTTTCTCCTGGCCGCTCAGCATGTGCAGGTACCCTCCGTGGATCCACACCATGACTGGAAGTGGTTTGGCGGGCTTTAGGCTCGGCGTCCAGACGCTGAGATGCAGACAGTCCTCCTGTCCCATGACCTGTCCGTCTTTTCGGAGGGGCTGCACTTGCGCACAGATGCTACGGAATCGAGTGGCGTCGTAAACGCCCCGCCAACACTGTCCCGCCTTAAATAGGTCCGCCGGGGGTCGCCAGCGACGCTCACCCACCGGCGGCACTGCGTATGGGATGCCTTTAAAGGAATAAGCTCCGCCTTTCCAGCTCCCTCGCAGCCGACCGCACTCGGTCTGCACCTCTGCCACCCTTGGAGGAGGAGTCTCAGCCACATAAGCCAGGTATCCCGCGAGAGAGAGGAGAGCGATCACGCCACAGCCGATGAGGAACATGCACTTGCGCGACACCACCAGGAATGGACTGACATAGTGGCGACGGACGTACTGTATCTGCTCCTCTTCTTCGTCCTGCACCAGATAACGATACTCCGTCCCCTCGGGGACCTCATATACATCCTCACTCATTTTCtatcttctgtgtgtgtgagagagagagagagaaagagagagagaaaacacCTGCGACATCGGAGCTCGCGCACGCACGTACGTCACAGACTAAATAAG

Function

symbol description
si:ch211-71n6.4 Predicted to enable carboxylic ester hydrolase activity; mannosyl-oligosaccharide mannosidase activity; and phospholipase activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
transcription factor Dp-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU185840 True 849 lncRNA 0.57 2 13009874 13012900

Neighbor

gene id symbol gene type direction distance location
arfgap2 arfgap2 coding upstream 9014 12990848 ~ 13000860 (+)
fam118b fam118b,LOC107669270,LOC107565084 coding upstream 31240 12968956 ~ 12978634 (+)
ilvbl ilvbl,LOC107758073,LOC107669134,LOC107753009,LOC107670636 coding upstream 43380 12956613 ~ 12966494 (+)
b3gnt2l LOC107758074,LOC107669052,LOC107554988,LOC107670608,LOC107753015,LOC107565088 coding upstream 78706 12926685 ~ 12931168 (+)
ehd2b ehd2,ehd2b,LOC107565090,LOC107668886,LOC107670629,LOC107554987 coding upstream 95561 12905342 ~ 12914313 (+)
large2 gyltl1b,LOC107670633,LOC107670096,LOC107554994,LOC107602128,LOC107758043 coding downstream 39068 13051968 ~ 13165194 (+)
cngb1a cngb1a,LOC107717637 coding downstream 260297 13273197 ~ 13299638 (+)
kifc3 kifc3,LOC107670565,LOC107670616 coding downstream 289636 13302536 ~ 13337442 (+)
eif3m eif3m,LOC107602127,LOC107671036 coding downstream 349647 13362547 ~ 13366713 (+)
prrg4 prrg4,LOC107670609,LOC107671204,LOC107758038,LOC107717603 coding downstream 358802 13371702 ~ 13376207 (+)
G125784 NA non-coding upstream 368438 12641192 ~ 12641436 (+)
G125783 NA non-coding upstream 373491 12636156 ~ 12636383 (+)
G125760 NA non-coding upstream 419930 12579725 ~ 12589944 (+)
G125753 NA non-coding upstream 597629 12411865 ~ 12412245 (+)
G125750 NA non-coding upstream 615142 12393511 ~ 12394732 (+)
G125877 NA non-coding downstream 324854 13337754 ~ 13339066 (+)
G125879 NA non-coding downstream 333778 13346678 ~ 13346937 (+)
G125881 wt1b,LOC107717629,LOC107670615,LOC107758040,LOC107602104,LOC107575657,LOC107673204 non-coding downstream 337591 13350491 ~ 13351730 (+)
G125886 NA non-coding downstream 354516 13367416 ~ 13369511 (+)
G125887 NA non-coding downstream 356813 13369713 ~ 13370781 (+)
glb1l2 glb1l2,si:dkey-224e22.2,LOC107554970 other upstream 53929 12946841 ~ 12955945 (+)
napab napab,LOC107668964,LOC107758075,LOC107670630,LOC107714540,LOC107565089,LOC108413256 other upstream 84406 12917226 ~ 12925468 (+)
G125836 NA other upstream 125262 12880588 ~ 12884612 (+)
G125830 NA other upstream 187093 12809450 ~ 12822781 (+)
trpc6b trpc6b,trpc6a,LOC107713306,LOC107691992,LOC108429885,LOC108264040 other upstream 1664077 11330221 ~ 11345797 (+)
LOC122362547 LOC107672480,LOC107758042,LOC107554971 other downstream 203584 13216484 ~ 13222148 (+)
rpl35a rpl35a,LOC107673417,LOC107670602 other downstream 414144 13427044 ~ 13430765 (+)
daw1 daw1,LOC107727686,LOC107576612,LOC107717604 other downstream 657389 13670289 ~ 13706114 (+)
G126132 foxa3,LOC107717614,LOC107692498,LOC107602118,LOC107727696,LOC107575381,LOC107670595 other downstream 666145 13679045 ~ 13682571 (+)
lbhl lbhl other downstream 848971 13861871 ~ 13869332 (+)

Expression


Co-expression Network