rpl35a (rpl35a,LOC107673417,LOC107670602)


Basic Information

Item Value
gene id rpl35a
gene name rpl35a,LOC107673417,LOC107670602
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 13427044 ~ 13430765 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU185911
CCAGCGTTCCCTGCGAGCGGCCTTTTCCTCCATTTTTGAGACAGAATCAGGTTTATTTGACCTGGTCAAAGCATCATCATGCCTGGAAGGCTGTGGAGCAAGGCCATCTTTGCTGGCTACAAGCGTGGCCTGAGGAACCAGCGTGAGCACACCGCTCTTCTCAAGCTCGAAGGAGTCTACAACAGAGACGAGGTCGACTTCTACCTGGGCAAACGCTGTGCCTACGTCTACAAGGCAAAGAAGAAGACTGCCACACCTGGCGGTAAACCCAACAAGACGCGTGTCATCTGGGGTAAAGTCACAAGGGCTCATGGAAACAGTGGAATGGTTCGTGCCAAGTTCAAGAGCAACCTTCCTGCGAAGGCTATGGGGCACAGGATCCGAGTGatgcTGTACCCATCTCGTGTGTAACCTGCTTTTGTGtacagacaataaaaaaaatttggtcCAAAACGTTGCCTCTGATCTT
>XM_043216745.1
AAACGCTTTAATTTTAGTCAGGCATATTTTCGGACGCCGTCGCTAACATTTTCCCAGCGTTCCCTGCGAGCGGCCTTTTCCTCCATTTTTGAGACAGAATCAGGTTTATTTGACCTGGTCAAAGCATCATCATGCCTGGAAGGCTGTGGAGCAAGGCCATCTTTGCTGGCTACAAGCGTGGCCTGAGGAACCAGCGTGAGCACACCGCTCTTCTCAAGCTCGAAGGAGTCTACAACAGAGACGAGGTCGACTTCTACCTGGGCAAACGCTGTGCCTACGTCTACAAGGCAAAGAAGAAGACTGCCACACCTGGCGGTAAACCCAACAAGACGCGTGTCATCTGGGGTAAAGTCACAAGGGCTCATGGAAACAGTGGAATGGTTCGTGCCAAGTTCAAGAGCAACCTTCCTGCGAAGGCTATGGGGCACAGGATCCGAGTGatgcTGTACCCATCTCGTGTGTAACCTGCTTTTGTGtacagacaataaaaaaaatttggtcCAAAA

Function

symbol description
rpl35a Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development and erythrocyte differentiation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in endodermal cell; intestine; liver; and pancreas. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 5. Orthologous to human RPL35A (ribosomal protein L35a).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006412 translation biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02917 RP-L35Ae, RPL35A; large subunit ribosomal protein L35Ae

RNA

RNA id representative length rna type GC content exon number start site end site
TU185911 False 469 TUCP 0.51 5 13427097 13430765
XM_043216745.1 True 506 mRNA 0.50 5 13427044 13430749

Neighbor

gene id symbol gene type direction distance location
LOC122362741 LOC107758035,LOC107576241,LOC107672562 coding upstream 796 13423857 ~ 13426248 (+)
depdc7a LOC107576633,LOC107758055,LOC107670610,LOC107717627,LOC107673282 coding upstream 20751 13396211 ~ 13406293 (+)
qser1 LOC107575561,LOC107758064,LOC107602126,LOC107671129,LOC107670638 coding upstream 35365 13377206 ~ 13391679 (+)
prrg4 prrg4,LOC107670609,LOC107671204,LOC107758038,LOC107717603 coding upstream 50837 13371702 ~ 13376207 (+)
eif3m eif3m,LOC107602127,LOC107671036 coding upstream 60331 13362547 ~ 13366713 (+)
abcc5 abcc5,LOC107670605,LOC107671530 coding downstream 1130 13431895 ~ 13458567 (+)
rnpepl1 rnpepl1,LOC107602123,LOC107758061,LOC107670589,LOC107671854,LOC107575502,LOC107717622 coding downstream 28205 13458970 ~ 13469321 (+)
LOC122322886 dvl3,LOC107575491,LOC107758060,LOC107671937,LOC107717599,LOC107670590,LOC106612406 coding downstream 40332 13471097 ~ 13499000 (+)
ap2m1b ap2m1b,ap2m1a,LOC107672017,LOC107602122,LOC108440593,LOC107593770,LOC107671693,LOC108264350 coding downstream 70940 13501705 ~ 13514695 (+)
mmp23bb mmp23bb,LOC107758054,LOC107670598,LOC107672246,LOC107717605,LOC107576217,LOC108440601 coding downstream 88302 13519067 ~ 13525306 (+)
G125887 NA non-coding upstream 56263 13369713 ~ 13370781 (+)
G125886 NA non-coding upstream 57533 13367416 ~ 13369511 (+)
G125881 wt1b,LOC107717629,LOC107670615,LOC107758040,LOC107602104,LOC107575657,LOC107673204 non-coding upstream 75314 13350491 ~ 13351730 (+)
G125879 NA non-coding upstream 80107 13346678 ~ 13346937 (+)
G125877 NA non-coding upstream 87978 13337754 ~ 13339066 (+)
G126098 NA non-coding downstream 112488 13543253 ~ 13543775 (+)
LOC122323141 NA non-coding downstream 181294 13612059 ~ 13693855 (+)
G126128 NA non-coding downstream 212633 13643398 ~ 13644760 (+)
G126139 NA non-coding downstream 378514 13809279 ~ 13840132 (+)
G126143 NA non-coding downstream 402879 13833644 ~ 13887497 (+)
LOC122362547 LOC107672480,LOC107758042,LOC107554971 other upstream 204896 13216484 ~ 13222148 (+)
glb1l2 glb1l2,si:dkey-224e22.2,LOC107554970 other upstream 471099 12946841 ~ 12955945 (+)
napab napab,LOC107668964,LOC107758075,LOC107670630,LOC107714540,LOC107565089,LOC108413256 other upstream 501576 12917226 ~ 12925468 (+)
G125836 NA other upstream 542432 12880588 ~ 12884612 (+)
G125830 NA other upstream 604263 12809450 ~ 12822781 (+)
daw1 daw1,LOC107727686,LOC107576612,LOC107717604 other downstream 239524 13670289 ~ 13706114 (+)
G126132 foxa3,LOC107717614,LOC107692498,LOC107602118,LOC107727696,LOC107575381,LOC107670595 other downstream 248280 13679045 ~ 13682571 (+)
lbhl lbhl other downstream 431106 13861871 ~ 13869332 (+)
G126175 NA other downstream 478799 13909564 ~ 13912800 (+)
G126146 gramd1bb other downstream 509330 13940095 ~ 13941369 (+)

Expression


Co-expression Network