G126132 (foxa3,LOC107717614,LOC107692498,LOC107602118,LOC107727696,LOC107575381,LOC107670595)


Basic Information

Item Value
gene id G126132
gene name foxa3,LOC107717614,LOC107692498,LOC107602118,LOC107727696,LOC107575381,LOC107670595
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 13679045 ~ 13682571 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU186277
GGCGTATCTTATCAGGTTCAGGCCCCAGCAGCAAGGTCCCTTTGTGTTTCTCATGAAGAAATAGCTACTATAGATTCCCACCAGGAGACCCAGGGCAGAGTCTACTttacattctctctctttctcttgcccCGTCTATCTTTCATCCTTCCCTCGCTTTTGCATGTGATCCGCTCTGCCTTTGACGCGACAAGAGAGAATGGTTTCACAGCTCCCTGTGATAAAGCAAAAAACACCGAGCTGAACCGTGGCTTCGGAGTTCTGCCGCCATCAATCTCACAAGAGAGAAGGAACCAGACAAAACGCGGCAGGGTGGGATATTTCTCACCGAAAAtagaagaaaagaataaaacgcATGTTTAAAAGTGATTCTGTGAACTTTTTTGGTTCTCGAGgtataaatgattcattgcCGGATGCTCTTGGGACAATAAAAGATGATAGGGTTATTATCCTGGCAGATGGAAACTGTCCGCATCACGGTTATTATATTGCTCAGCATGCTCGTTTTACAGTAAGGGTCTTGGAAATGTCACTTTCCAGATTGTGAATTGTTTTATTTCGAAATTAAGTGGGCTCCACAAGTGAACACGCTtctgttttaatacaaaaatactaaagTTTGCTTTACAAATgatatcatcagcataacaatTCAGCTGCGTTACTTAAGCTGCATTGACTCCACATGTTTATGTCCAACCTCTTGCTAATTTGTCCTGTCTTTGTACAGTTTATACTTAATATTGTGTATTGTAGTATTTTAAGCCATCGTACAATAAATAACAGACAAACCCTGAAAAACTACAAGCTAAGATTTATCACTGGATTGAAAAatatgcctatatatatatatatatatatatctttaaaCATGTTGCAAACAGTCACATTTTTACTCTAAGAATATGTAATAATGAAAAGAACTCCAAAGGATATGtgaggcttttttttaataagaaaagaaCATAACAAACTTTAAGAACATGAAACCATGAAACAATCAACcaaataaagcaatatatatatattaagacaCTTATCTTCTAAGCCCAATGGCCAAAAAGCTGGGTTTAAATAAACGAAACAGTACAAGAACATCAATTCTGACCTGCTTTCTTACAAATTTCATGCAAGAAATCTGTAAATGACGTGatggctttttattattcaaatggCTTTGATGTCTCTCTTTGAAATGACGAGATCTTACAAAAATACATCACGGCAAATTCAATAGGGTCTGTATCATTTTCTGATAAAAAGCTGGTTACAAAGCATTGTTGTAACAAAACGATCTCACCCCTCCCCAGCAGTGAAGAACAGAGAGGTCACTAGTGCAAGTATTGTATGGAAATGGCCCTTATAGTGCACTGTCTGCTGATCTTACTAGAAGCTTCAGCTGAGCCGAGCAGACCATTGAGGCACGCTGGAAACATCTTCGACCTCTTTGCCATGAATGTTATTGCCAGTATTTCTAAAAAGGGATCAGTTGGATGTACCACAGTTTTATCCGCCGCTGTCGAACTTTTATCTCTATTTATACTTAACACAAAACTCTTCAGAATATACAAAATGACTTCATGGCCAagagtaaaaaaagtaatttcttcAGCTTCTCTATAGGGACAAGCTTAACGATACACACTCTCCATGCACGTACACTGTATGTTAGTGCACTTCAACTGAACGTGCGTTATGCTGTAACACCAAACAGGAGAGTTTCCCTGTAACACAGTAACACCTGCTCACAGCAGTAACCTGAACTCAATCGCGCTCATGCCCTCTTATTATCACATTGTTAACGTAACTTCACGACACAAGATCATACGAGATATATTAAATTCTTCCcttcataaataaatgcctgTCTCCAGCTTCCCCAAAACAGTATATACACGTGGCATCATTTGCATACATCTTCTGTGTTACATCCGAAACCAGAACGTTTAGTTCCTGAACATATGTTAATTAAATTAGCTTCTGGAAATGAAAAAGCTTCAGCGCTTTTCTCagcacactcttaaaaataaaggttattcGCACGAAGGACCTTCGCCGTCCGTGGAACCCTTCGAGATTCTTCACACTGAGAACTTCAAGAACCTTTGAGCGGCccaaaaaaatggttcttctgtggcgtCGCTGTGAAAAccccctttatttttaagagtgcaggGACCGAAGCTTAGCTATCAATGGCAAAGCAAGCTCTGTGTTGAAGATGTAAGCCTCCTGCCATTAAGAGTCTGTAGAGTTCAAATGGCTGGTAAACACATTAGGATGCATTGAGCACAGACCTGCTGTAGAGGGTCTGGTAGTACGCACCAGAGTCAATGGCTGATGGACCTGCGCTGTCATAGATCTGTTTGGTAGCCACCGGAGAAGTGGTGGCGTAGCTGTTGTAAGCCATGACCTGGTCCTGGTACGACTTGAGGTCCATCTTCTGCTCGTTGGACATGAGGTTGGTGATGGAGAACGGATGGTTGAAGTTGTAGTGGGGGTCCATGGACTTCAGTGGGTCGTTCTGCAGATCCAGGTGCTGCATGGGGCTGGCCAGCAGGTGAGGGCTGCCTCCCATTCCCTGAGAGTGCAGGTGCGAGCCGGACGGGGGCATGGAGGAGGACACCGAAGACGGGATTGGCACTGGCGAGCTGTGCGAAAGGCTGGGGCCCTGAGACGGGCAATCCAGCTGCACCAGGCTCCTCTGCTGCTCCTCCGAGGCGTGGGAGCTGTCCGAATGGGCAGAGTCGGCCCCTTCGGAGCCGGTGGCGGGACTGTGCTCCTCTTGGATCCCCTCACCGCCGTGGCCTCCCTTGGCGCTGCTGCCGCCCTCCTGAGACTTCGCCGAGCTCTTTTTCCCAGATTTATCCTCCAGCTTGAAGCGCTTCTGGCGACGCAGGTAGCAGCCGTTCTCGAACATGTTCCCGGAATTGGGGTGGAGCGCCCAGTAAGAGCCCTTGCCGGGCTTGTCCGGGGAGCGTGCCACTTTGTCGAAGCAATCGTTGAAGGACAGAGAGTGGCGGATGGAGTTCTGCCAGCGCTGCTGGTTCTCGCGGTAGTACGGGAACAGGTCCATGATCCACTGGTAGATTTCGTTGAGCGTCAGCATCTTGCTGTTGGATTGCTGGATGGCCATCGTGATGAGGGATATGTAGGAGTACGGAGGCTTGGCGTGGGTCAGCGAGCGTCGATAGGGCTTTGGCATCTCCTTAGTCCGGTTGAGAGAGGTAGGAGAGGGGTAGCTAATCTGGGACATCGGTTGCATGCTTTGGTAATGCGAGAGGGGACCCAGGGAGGAGGCAGAAGAGCCCAGCTGGGTCAGAGGACTGGGATTCAGAGAGGAGCCGACAGGGGACAGGCTCATGTGGTTGGGGCCTCCACCCATGCTGCTCAATGGGCTGCTGTTGAGCCCTGCGCTGGGATAGCCCATATTCatgctggatgtggaacaggcCGAGTTCAGATTTATGTAGCTGTTCAAGCTGC

Function

symbol description
foxa3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including axial mesoderm morphogenesis; hatching gland development; and nervous system development. Located in nucleus. Is expressed in several structures, including axial mesoderm; digestive system; endoderm; germ ring; and hatching gland. Orthologous to human FOXA3 (forkhead box A3).

NR:

description
PREDICTED: hepatocyte nuclear factor 3-gamma-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186277 True 3489 TUCP 0.46 2 13679045 13682571

Neighbor

gene id symbol gene type direction distance location
sertad3 sertad3,LOC107670600,LOC107717619 coding upstream 81831 13594302 ~ 13597214 (+)
blvrb blvrb,LOC107692505 coding upstream 84896 13591816 ~ 13594149 (+)
mmp23bb mmp23bb,LOC107758054,LOC107670598,LOC107672246,LOC107717605,LOC107576217,LOC108440601 coding upstream 153739 13519067 ~ 13525306 (+)
ap2m1b ap2m1b,ap2m1a,LOC107672017,LOC107602122,LOC108440593,LOC107593770,LOC107671693,LOC108264350 coding upstream 164350 13501705 ~ 13514695 (+)
LOC122322886 dvl3,LOC107575491,LOC107758060,LOC107671937,LOC107717599,LOC107670590,LOC106612406 coding upstream 180045 13471097 ~ 13499000 (+)
LOC122323172 LOC107560134,LOC107692493,LOC107733301,LOC107670597,LOC107717611,LOC107602107 coding downstream 187458 13870029 ~ 13873265 (+)
rbm7 rbm7,LOC107755678,LOC107739154 coding downstream 440825 14123396 ~ 14126844 (+)
barx2 barx2,LOC107670639,LOC107692488,LOC102779973 coding downstream 447928 14130499 ~ 14147187 (+)
smtla LOC107709547,LOC107590731,LOC107692520,LOC107656966 coding downstream 895599 14578170 ~ 14583254 (+)
fli1 fli1,LOC107692484,LOC107656981 coding downstream 1021589 14704160 ~ 14727887 (+)
G126128 NA non-coding upstream 34285 13643398 ~ 13644760 (+)
G126098 NA non-coding upstream 135270 13543253 ~ 13543775 (+)
G125887 NA non-coding upstream 308264 13369713 ~ 13370781 (+)
G125886 NA non-coding upstream 309534 13367416 ~ 13369511 (+)
G125881 wt1b,LOC107717629,LOC107670615,LOC107758040,LOC107602104,LOC107575657,LOC107673204 non-coding upstream 327315 13350491 ~ 13351730 (+)
G126139 NA non-coding downstream 126708 13809279 ~ 13840132 (+)
G126143 NA non-coding downstream 151073 13833644 ~ 13887497 (+)
G126178 NA non-coding downstream 233167 13915738 ~ 13917760 (+)
G126183 NA non-coding downstream 239275 13921846 ~ 13922131 (+)
G126184 NA non-coding downstream 239586 13922157 ~ 13922424 (+)
rpl35a rpl35a,LOC107673417,LOC107670602 other upstream 248280 13427044 ~ 13430765 (+)
LOC122362547 LOC107672480,LOC107758042,LOC107554971 other upstream 456897 13216484 ~ 13222148 (+)
glb1l2 glb1l2,si:dkey-224e22.2,LOC107554970 other upstream 723100 12946841 ~ 12955945 (+)
napab napab,LOC107668964,LOC107758075,LOC107670630,LOC107714540,LOC107565089,LOC108413256 other upstream 753577 12917226 ~ 12925468 (+)
G125836 NA other upstream 794433 12880588 ~ 12884612 (+)
lbhl lbhl other downstream 179300 13861871 ~ 13869332 (+)
G126175 NA other downstream 226993 13909564 ~ 13912800 (+)
G126146 gramd1bb other downstream 257524 13940095 ~ 13941369 (+)
gemin7 NA other downstream 1144217 14826788 ~ 14828292 (+)
LOC122322993 LOC107709552 other downstream 1224045 14906616 ~ 14910157 (+)

Expression


Co-expression Network