G126345 (ltbp4,LOC107724163,LOC107566282,LOC107692515)


Basic Information

Item Value
gene id G126345
gene name ltbp4,LOC107724163,LOC107566282,LOC107692515
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 14936925 ~ 14937634 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU186584
TTCAGACTCACGCTCGTAGACTCGTCGTGGTCCCTCCCGTCTGTCAGGAAACATTGGGAATGGGGGCGGGGCTCTCCATGACTCCTCCCCCTCGCTGTACGGGGAGTTTTCCGGAAGGGGAGCCAAGCTGAGCGGGGCCCCGTTCGGACGGGACGGCAGGGGTCGTGCATCAAACGTCTGCTCACCGCGAGGATCCGGGATACCGAAGGGAGGGCCAGGGGCCGTTTCGtaatcctcctcctcctcatagTAACGACCTCCCGGGGCCGGCTGCCTGTAGGGGCCGTCTGGGAGCCCGTAGGAGCCGGGCGGTCTGCCTCTCAGCCCGGATCGCCGTCCTCCTCCTGTCACAGAGCTGTAGTCGTCGTAGTCGGGGGATATGTAGTCGGGGCGTCCCGGCAGGGCCGCGGGGTACTCTGGGGGGCTGTACGGCGGCCGGTACCCTCCTCTTCCAGGCAGGGGCCCGGGCCCGAAGCGCTCGTCGTAGTAACGAGGAGAGTAAGGAGGAGGACCGAACTCATTGCACAGAGCCTCATAG

Function

symbol description
ltbp4 Enables transforming growth factor beta binding activity. Involved in regulation of proteolysis. Located in collagen-containing extracellular matrix. Implicated in autosomal recessive cutis laxa type IC.

NR:

description
PREDICTED: latent-transforming growth factor beta-binding protein 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU186584 True 538 lncRNA 0.66 2 14936925 14937634

Neighbor

gene id symbol gene type direction distance location
shkbp1 shkbp1,LOC107692479,LOC107724139,LOC107656962 coding upstream 15902 14911044 ~ 14921023 (+)
ppp1r37 ppp1r37,LOC107692481,LOC107566290,LOC107709550 coding upstream 35518 14871768 ~ 14901407 (+)
bmp16 LOC107566293,LOC107692530,LOC107709563,LOC107577119,LOC107725066 coding upstream 86549 14843211 ~ 14850376 (+)
kcnj5 kcnj5,LOC107725067,LOC107558569,LOC107709561 coding upstream 161532 14752182 ~ 14775393 (+)
fli1 fli1,LOC107692484,LOC107656981 coding upstream 209038 14704160 ~ 14727887 (+)
si:ch211-136a13.1 LOC107727474,LOC107566284,LOC107692514,LOC107722278,LOC108264834,LOC108435511,LOC106580732 coding downstream 114410 15052044 ~ 15064838 (+)
yif1b yif1b,LOC107566288,LOC107564401 coding downstream 129228 15066862 ~ 15072223 (+)
dusp8b LOC107713871,LOC107692476,LOC107569904,LOC107599770 coding downstream 495322 15432956 ~ 15442131 (+)
mob2b mob2,mob2b,LOC107722284,LOC107656971,LOC108430083,LOC108264656 coding downstream 511707 15449341 ~ 15482697 (+)
scamp5b scamp5b,LOC107740350,LOC107722282,LOC107599784,LOC108430449 coding downstream 573901 15511535 ~ 15518917 (+)
LOC122323060 NA non-coding upstream 193481 14740786 ~ 14743444 (+)
G126285 NA non-coding upstream 465910 14470760 ~ 14471015 (+)
G126262 NA non-coding upstream 494422 14375565 ~ 14442503 (+)
G126251 NA non-coding upstream 816075 14120193 ~ 14120850 (+)
G126243 NA non-coding upstream 868054 14068604 ~ 14068871 (+)
G126458 NA non-coding downstream 128712 15066346 ~ 15066577 (+)
G126591 NA non-coding downstream 823329 15760963 ~ 15820330 (+)
G126605 NA non-coding downstream 887793 15825427 ~ 15828353 (+)
G126626 NA non-coding downstream 1061818 15999452 ~ 16003818 (+)
LOC122362955 NA non-coding downstream 1120900 16058534 ~ 16058974 (+)
LOC122322993 LOC107709552 other upstream 26768 14906616 ~ 14910157 (+)
gemin7 NA other upstream 108633 14826788 ~ 14828292 (+)
G126146 gramd1bb other upstream 995556 13940095 ~ 13941369 (+)
G126175 NA other upstream 1024125 13909564 ~ 13912800 (+)
lbhl lbhl other upstream 1067593 13861871 ~ 13869332 (+)
LOC122362588 NA other downstream 97749 15035383 ~ 15047893 (+)
LOC122362954 LOC107740354 other downstream 1013348 15950982 ~ 15953653 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other downstream 1109435 16047069 ~ 16055627 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other downstream 1326205 16263839 ~ 16271267 (+)
G126820 NA other downstream 1816075 16753709 ~ 16818399 (+)

Expression


Co-expression Network