G127873 (LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654)


Basic Information

Item Value
gene id G127873
gene name LOC107686547,LOC107710394,LOC107559637,LOC107600002,LOC107662879,LOC107735654
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20586051 ~ 20588863 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU188825
TCcttcagttttttatttaataacattgcTTTCATAATGTTATATCCATTCTGAAATATCAACAAGGTCTTTTGgattaaaaatctttaataacCAAAAGGTCAGATTATAATGGACATCATAAAAATACGAAAAATTCtacattgaaaatatattatcttGTTCCCAAatttccaagaaaaaaaagtttctgagGTTTGTCACTCACATTAGACCAGAACAAACAGTAACATAGATGcaaataacaaatgtaaaaagcaaaaaaatcattcaCGAATAGGAAACACGGTGCACTAAGTTTTCTTCATAAATCCAcatataacagtaaaataattttgaaatgtactTGTGATTTGATGTAACGTTAAGGTAAAATGTAACGTGTAATATAGCCTTTCATAAAACTAGTCCCTATGACCTTCATACTTTGCACTGCAAATAATATCAGCTTAACCATTGATAAGACTTTTGTTGTGACTCACTGTAGTACTTTGACACACCTGCAGTCTACAAAGTGCAAAGTCAAAATGTcttcacagaaacaaataacATACAACAGAAAGAACAAAGTGTGCTGAACACTTCAGGCTGCATAACAACTTACgtttaatgaaagtaaaaataatgtcttATGGAATATCTATAGAATAACTTGGAAGTAGAATCTGGATTATTATTCTAATCCTAGTGTtctaaaaacacacttaaatgACTATAGTTCCTAGACAAACCCAATATAACTATGAAAGACATGTAGACAATAACTCTTTCAACAAAACGAGGTATTTGCAAGAggctgaaaaaaataactggCCTTAATTAAAGAGATGCTTTTTGATTTGCATGTTAGCTGTATCTGCTGCTAAAGAAGCTACATGAACAGAAAAAGACTTTTGTAAGCcataaagtgtcatttaaaagTGAGTCACCCATTATGATTTCTACCtattgtttgcatttatattttccaaaatgaaATGCAACCAACTGTTGCAAACTCAAATAGAGAAGTCAGCTGTAGGACACAACACTATAagtagacatttaaaaaagcattgaAAAATTCACAGCTGAAAACAATccttcaaatataattttatataccAAAAATTTAAGTGCTCTTCTTTATTAGTTCGCAGCTTTGCTAAAGTTTGGGTTAAAATAAATCACGGTGACAGTGATGTCGTCTCGGTACATGCGTGCTAAATCGCTAGGCAGAGCCAGCAGGGTTGCCAGTCTCTCCTGGTCCATTTCTCCATATTCATTTGTGCCTAGTGCATGGCGAATCAAATGCGTTGCTCCATTCAAATCCAAAGCGGGTGTTGCTCTGGCCCTCCGTCGCAGCAGCAGCTGGTGCATTTGTCCCAAGTTGAGCTGGCTGGCTGAGACCGGAGCTTGCAGGTGAATACCAGTCAGTTGTTCTGCCACAAGCCTCACCGCTTCATCATTGGTCATCTCGTCCCAGAGCCCATCAGAGGCCAAAATCAAAAACCGGTCCTGCGGACGAAGCCGGTGGTAGGTGACTTCTGGCGTGGCCTCTAAGTAAGGTGGGGTGAGATAATTAGGTGGTGCGTACTGATAAAGATTTAGTGCTTCTAAATCAGAGTCTCCGTTCTCTATAACACTCTGCTGGAGCTCACGACTCCATTTGAATCGAACGTCTCCGAACGCTCGCAACGGCATCAGGACCCCGAGCAGCCTGTCATCTACGATTATGGTTTGTCGCTCACTAGCCGGGTGCTGTCGCCATACCCGCTCCACCTCATCTGCATTGGCAGCGTTGTGGTCTTGTGTGAGAGGCAAAGCACTCCAGCTCCCATCATGCTCCTGGACACCCAAAACTGCCCGACAGTCTCCTGCATTTGCAACATGCACTCCTTCCGGTCCAACGTAAGCGACACAAGCTGTGCAGCCAGCGAAGGCGGCCTGGATGGCAGTGCTCCGCATCAGGTCATTTGCGAGCGGCACCTGTGCCTCAAGAGAAAGATCCGTGTCCAGTCGCTGGAACGCATAGCTGAGAGCATCTGCGGGACGCATGCCATCACCGTGTTCTTCGCTCGCCAAAAGCTCCTGCCAGTAAACACGCAAATGATCGACGTACAGGGCTGCTGATTCCCTGTAGTTGTAGTCGTTATGGTGTTTGAACCACTGCAGAATGGGCGGCACTGGGCGTAAGGTCTCCATGGCGGCCTCTAGATCCTCCAGGACAGACTCCGACATCATCGAAACAGCTATGTAATAAGGCAGACGCTCGCTGACTGCTTGAGCGCACGCATGTCCGCCGTGTCCATCGAACACGCCAAAAAGCATGCCACGAGTCTGGAGGCAGCTGGCGCTGCTGCGTCTGTCTTCTAGCGGAGTGTTGGCTGAAAGCTGGTTGCTTTCAAACCTGAGCACTGGACTGGAACCACCACGGCCATCAAACTCTGGAATACGAACGGATTGCTCATTAGAACGCAGAACTGCATTGATCTGCAGCCGGCTCAGCTGGAAGTCCATTTCACGTCTTGGAGCATGCAGCGTGTTGTCTTCTTCCTGTCCTGAGCTTCCATCCGATCGTCCACCACGGGAGGAGAAGCTCTGTGCTTGAGGGCAGGTTCTACACAGTGTATCAGGTAAAACATGCTGGCTGGGTGCAAAGAAACTAGTCAGATGTCTTCCACCAGCATAACGGAGGAGCCTTGAACGCAAATAGCCAGACATTACTGCCTGGATGCAGTGATCAAATCAGTCTACAACTCCAGCATCTGGGAAAACACACTGTGA

Function

NR:

description
PREDICTED: pyruvate dehydrogenase [acetyl-transferring]-phosphatase 2, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU188825 True 2766 lncRNA 0.44 2 20586051 20588863

Neighbor

gene id symbol gene type direction distance location
syt1b syt1b,LOC107686614,LOC107733268,LOC107560093,LOC107662864 coding upstream 20745 20561835 ~ 20565306 (+)
cers3b cers3b,LOC107559674,LOC107733272,LOC107662883,LOC107686553,LOC103029792 coding upstream 47433 20532906 ~ 20538618 (+)
LOC122323072 LOC107559655,LOC107686551,LOC107733270,LOC107662882,LOC107736185,LOC563500,LOC107600544 coding upstream 54472 20506031 ~ 20531579 (+)
vwf vwf,LOC107600553 coding upstream 81677 20471101 ~ 20504374 (+)
si:dkey-88e18.2 LOC107686617,LOC107733267,LOC107560122 coding upstream 140684 20440144 ~ 20445367 (+)
neto2b neto2b,LOC107710374,LOC107662839,LOC107599993 coding downstream 21074 20609937 ~ 20618180 (+)
arf5 arf5,zgc:77650,LOC108439765,LOC108439842,LOC107599983,LOC103033491,LOC107599973,LOC105912562 coding downstream 40880 20629743 ~ 20633636 (+)
zgc:77752 zgc:77752,LOC107710390,LOC107686544,LOC107559595,LOC107736252 coding downstream 59437 20648300 ~ 20653670 (+)
odf3b odf3b,LOC107686589,LOC107710372,LOC107559895 coding downstream 65669 20654532 ~ 20657823 (+)
rabl2 rabl2,rabl2a,LOC107559580,LOC107710389,LOC107686543,LOC107662875,LOC107600941 coding downstream 77890 20666753 ~ 20671837 (+)
G127860 NA non-coding upstream 13741 20562083 ~ 20572310 (+)
G127785 NA non-coding upstream 202293 20325330 ~ 20383758 (+)
G127800 NA non-coding upstream 210216 20373854 ~ 20375835 (+)
G127780 NA non-coding upstream 304756 20256712 ~ 20281295 (+)
LOC122363139 NA non-coding upstream 361467 20221304 ~ 20224584 (+)
LOC122363025 NA non-coding downstream 52902 20641765 ~ 20647708 (+)
LOC122362840 NA non-coding downstream 281012 20869875 ~ 20887115 (+)
G127935 NA non-coding downstream 305914 20894777 ~ 20937442 (+)
G128148 NA non-coding downstream 491906 21080769 ~ 21081291 (+)
G128149 NA non-coding downstream 539690 21128553 ~ 21129033 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 29424 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 36694 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 492450 20067678 ~ 20093601 (+)
wdr59 wdr59,LOC107686576,LOC107662905 other upstream 570345 20003004 ~ 20015706 (+)
LOC122323181 LOC107600247,LOC107735268,LOC107660675 other upstream 1297495 19269611 ~ 19288556 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other downstream 821 20589684 ~ 20600519 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other downstream 45982 20634845 ~ 20641059 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 1812081 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 1845943 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 2868237 23457100 ~ 23736848 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020479 NA coding CM030127.1 CM030127.1 22250662 ~ 22252251 (+)