LOC122363143 (LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534)


Basic Information

Item Value
gene id LOC122363143
gene name LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22400944 ~ 22411957 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU189448
tatatatatatgtatagaaagagagagaatagaaTATCACATCCTGTTGAAAGCACTTCCTGTTGAGCTCAAAAAGATGaggtaatgttttaaaatgtgccttaggttgtgtgttataaatgttCGGACTACAAGGCATCGCTGAGGTACGACAGCAACAAATTAAACAAGGTTTGTAAAGACTGTTACTTCATTCTGACTGGAAGAGTGGACTCTGAGGAGCCGGTCAGCGGGAAGAAAAGGGGAATTCTTGAGGTACGTCTTATTgatatttggttttgtttctgtctgcaatttttaaaaaaaaaaatttttataatctTGACCTTTAGAGGTGTAATGAGTACCTAAAAATCATACTTCAGTAAAAGTACAGATACATTACAAGCCACCAATTCTAAAACAGCTTGAGTACAAGTCTGATTTTAACAGTTCTTAAGTATTTCACTTAGACTTCATCAAAAGGTGACATGTGACTGCAACACTTATTACAAATGTAGTGGAGTAAAGAGTACAGTGCTTATGCAAAAATGTAGTAGAGAGTAAAACTTGCTAATATCTTTGACGCTATCATGTAAAGCCCCAGAGTATCCAAGACGATATTCAAGTGCTGTAATTAATGACCTTTACTCAAATACTTGACACCtctgcttgatttttttttctcttcttgaCCTTTATCAGATTGAAGCAGCTCAGGTCTCAGGAAACAGTTTTCTTTGTGGCTTTCTGCAGTACAGTACAGACCGAACAAAACCGTGTCAAAGGGTCTGGTGTGTAATTCCCCAGCACGACGCGCTCGTTCTTTACCTCTACGGCGCTCCACAGGATGTCAAAGCCCAGTGTACCATACCGCTTCTGGGTTACCAGGTTGAGGACGTCCAGCGCTCTGTGGATCATCCTCCCACCAGCTTCCGTCTGTGCCAGTCCAAATCTGTCCACTGCTTCACTGCCGACACGGAGGAAATGAAACTGCGCTGGCTAAAAGTGATCCGCAAAGCTGTGATCGGTGAGACGCCCGAATGCCAGACGCCGGTCGATGACCTCGCCAACGGTTGCCATGAAGGCACGCCTGATGGCACCTTAAAAGACAAGGCAGTTTTCTAGCTTTTGCATTATGCGTGTAACTCGGCGGAATAGAAATTGTTCATTAGGATGTGAAACCTTCCAGAACAGGTTGGATTTATTTGGGAGCGTATAAGTAGATATgcctttttaatgtattataatgtcAACCACAATcagacagtaaaaacattcagtgtgtgattatttaaatcaataactCAGTTTACGAAAGTTTGTTCGCAGACCAATCTCAGCAAAGTCTGAATAATGCTTTGCGATGTATTAGCCTTTCTCTTTGTGacgtttttaaatttgtatatgCTGTTTGTCGTTTTCAATGTCTCTAAGATTCATGCACTTTATTGCTTTTTGTAAAGTAGgccattaacattaaaatgaatgaataaga
>TU189467
AAGCCAGCACACCTTCAGAGTCCGGTGACGGACATCTCCTTACCTCTGGCTGCTGGAACGTCACCCATCAGTCACAACATGGAGGGAGGAGGAGTAGGAGGAGGAATAGGGAAGGGCCTAGTGTCCAACCTCATCAGTCGCTTTGAGGAGAACAGGTAAACTTGCGATCGATATCTACCTCTCTTTGCTCTGTTTATGGATATATAGATACCAGCATAGGTTTACTGATCCTGCTCGCTTTTGCAAAGGTGGTGTTTTCAgccttcagtatcacatgatccttcagaaatcattctaatatgctgattttatgcctactgtttttactgtcacttttaatcaatttaatgaattatttaaaaaaaagagagaaatcttGTAAAATTAGAGTCAGATGTGTCATGTGATTTAAATTACTGTAAAGGAATGTCTGCACTGAAATTACACAAGAAGATGAAAAAGCAGAAGCTAGTTTTTACCCTAATGTTCTGTTTCTCAAGAGTTGTAGAAAGAACTGGTTTTGTATGAGACACTTACTGTTGTGTGTAGTAAACCTTCAGCACAGGAGGTAAGATTGATTTATCAATATATGTCAAGCTATCTATTCTTCACTGTTACCTCatgcaaaactattttaaaagtgctTAATAAAAGCTTGGTGTAATTCAACAAAGTGCAATGATTCATACTTTATAATGGCTTGTGCCTTATGTTTTACTGCTGCCGATAGAGCTGTTCAGTCATTTGTAGGCCGACCTGGAAGGCTAATTCACCATGAGCTCCCTCTGGAATTTCTAATGGCtttttaagagtaaaataaGATCTGTGGTTCTCGTTATTTGAAGAGACTTTCACATTTCGCTTTCAGATTACCTCAAACTCATAGCTTATGTGTTTAAAGCATATACAGACACTATATTATTGGCAGATaatcatgtttatgtttagttcatgcatttagttatttattaaacactggTGTCTGCTGTCACAATGCTTTTCCTGCTGCTTTATGAAATAAGCCACTTGAGgaagtgcatttgtttttaccaTGGTTATACTGGGTTTAACACTGAAAACTCCCCTTAACCATGATGAATTCAGTGTGAAGCATTTGTCGTACTGCATAATACTCATTCCCTTCATCTGCTATAAGTCAGCATCGATGTAGGCAGGTCATATGAAACCATATGGCCATCATAACTAACCGGACTGACCATTAACCCCAGTTCCTCACAAATAAATCCCTGCAAGCCCTTATCCTGTTTTGCCTGCCGGCCTAGTGCCATTGTGTTGTGCCGGGTCAGAATCTGTGCAGGAATTCATCCTGTAAGCTCTGTAGCAAAGTAAGAGCACACGGCCTGAGGTCTGATAACTCCTGCAGCTGTCTGGCCTGGGCCAAGACGTACTTACGAATGCTGACCGAAGAGCCGCGACCTCAGACAACTGCAGGGGGTCGGTTTACAACCTCATGGGAAAAAACTATGAAATACATACTGCCCTACTTGTGTGGCTTCATTTAGTagcttcattttgttttcctgaAATGCCTTGATTGTAACTACATTTCATCATACCAGATTACAAGGATTTAGCTTTTGTTCCTTGCTTAGGACAGATTTGAACGTTTCGAGTCGTGCACTGAACAAAATATTAGATGGCACGTATTAATCAATCTCAGCAGTTCAGAGCTCAACGGTGTATTAATAGCCGTCTGTAATCTGGAGTGTTCATTGTAGTGCTCCGTACCCTCAGATCCACATCTCCATTCTCTATCTCACAGGAAACGCTANtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtgcatgaaCCACAAAGCCTTGTGGCTTAATTTTGTTCGTNtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtatgtatgtgcatgaaCCACAAAGCCTTGTGGCTTAATTTTGTTCGGTTTTTTGCACGCTCATGTGAAGTTATGAATGAATGTATCgtgtttttacagtttgctTAAGTGGAGTTTTGATGATTTATTAAGGATGCACAATATAAGTAACCATATTTCcagtattataatttttatatcaatattggTCTAAGAAGCCAATGTTACTTCCCTATTTTTTctatgctgtatttttagcaaAACAATTCTTCATCTTATCTATTGTACATTACAATATTCTGCCTGATTTTACTTGTAAAAGCTTAAATCAGGCTTTTgattttaacacattattttaaatacataaactcAAAATATCATATCAGTtatgatatgatataaaatatttattttgctttatttatatcgtatcaaatatttattttctatattgtGCATCTCTGTTTTGTATTGTTCATCAGTCAAAAAAGTATCCTTATTACACGGCGCcctggaatacttgattctgattggatatgttcttttttttttaaattagaaagtATCAGCTTTCTAATTATATCACttgtttggtaacactttgcaGTGAGTTTACATTTGTCAACATTAGTTTACATGAACTAGCAATTAAGATAATTCTAAAGCCTTATTCTTAATGTACGTTTTGACATTTAGtaatacattaataacataTACCCCCAGGTTCACAGGCAATTCTTAATCCTAATCCTAGACTAAAATGCAAatctgtttcaactgaaagaaacttgtactgactgatcttaaaacatgtcagggGCTTTGTTGCGTCCTAAGGTGCACACAAGCAatgcttttttctaaggcatgcttataaaaatgaaatgacctAACTGAACTATgagcctaatcctggcttagactaaaccctgtctgtgaaactgggccTTAAAGTTGTATCTGTtaataaacctaaaataatttttcttgtcAAAGCGGCGCAGGTTGATAAAGCTCAagtcaaatcaatatttcatgtccgtttatttatttatttattaagcagcCGTGTAATAAATGGGATCCTGTCCAGTCATCCggtcattatcacaaaataaaccccTCCAGGGTGATAAAAGAATGACCAGACTGTCTGGGTGCACTGCACATGATCTCttacatattttatagtttGCTCCCACTGTTCCTAAAAGCATTTTGTTCAAAAGAGAAAGGCCGACTCTCTtgagtgtgtaaatgtgtgttcttGCATGTAGGCATGTATTCTGAAGTAGGCCAGCCGTGTCTCACGGGACACTCTGCAGCCGTGTTCTACCTCTCCTCACCCTCCCTGTTCCTCCCATCCTCCTCCTATCCCCTTTTCCTCCACTCCTCCCATGACCCGCTCATTCACACATCCCCTGCAAACGCACACAAGACAGAGGAAGTTTGTTCAACACTTCTTTTAACGCCATCGCATTCACACGAACAAcacatctttctctttctgctggcCAACTCTAAAAGTTAGCTGTTTTTCAGAGTTCTCTGACTCTAAAGAAGGTGACCTTcctctgctctctttctctctctctctctctctctctctctctcaacagTCACACAGACATTCGGAGGGAGGGCGCTCCTCTGAAGCAGGTCAGCAGATCTCCTAACTGCAGCCCGGCTCACAAAAACTACCAGAGACAGACGGAGAAGCCCACAGAGCCCGGCTCTCCTGTGAACAGCCCACGCCATGCTCTCAAACCCCCCAATGGGTTTCTAACCCAAAAGAAGAGAGAGCAGGACATGAATCAGGACATGGACGGAATTACGCACGACACAGTTCCAGCAATGAGGACCGACAGCAAGGGACTGCTGAACGGAGATGCCGGCGATGTAGCTAAGAGGGAAATTATAGACCAGGACTGTGTGGATCCACCTCACGCTCATATAGAACGGACCGAAGATGTGGAGAGGAACGCGCCGGAGCAGAGTGACGTTGTGATGAACAGCATCCCAGAGCAGAAGGAAACTAATGAGCAGAAGCTCTATAAGATAGCAAATGAACTTCTGCAGACAGAGAAGGCTTATGTTGCGCGACTCAACTTATTAGATAAGGTGTTTTATGCCAAGCTGTTAGAAGAAGCAAGAAAAGAAACGTTCCCCATGGATGTGGTGAAAAACATCTTCTCCAACATCTCTTCCATTAATACCTTCCACAGCCAGTTCCTCCTGCCTGACCTGGAAAAACGCATGGGAG
>XM_043265105.1
CTCCTTGTCACTTTTCCTGCAGTGCCTCCTAAGCCAGCACACCTTCAGAGTCCGGTGACGGACATCTCCTTACCTCTGGCTGCTGGAACGTCACCCATCAGTCACAACATGGAGGGAGGAGGAGTAGGAGGAGGAATAGGGAAGGGCCTAGTGTCCAACCTCATCAGTCGCTTTGAGGAGAACAGTCACACAGACATTCGGAGGGAGGGCGCTCCTCTGAAGCAGGTCAGCAGATCTCCTAACTGCAGCCCGGCTCACAAAAACTACCAGAGACAGACGGAGAAGCCCACAGAGCCCGGCTCTCCTGTGAACAGCCCACGCCATGCTCTCAAACCCCCCAATGGGTTTCTAACCCAAAAGAAGAGAGAGCAGGACATGAATCAGGACATGGACGGAATTACGCACGACACAGTTCCAGCAATGAGGACCGACAGCAAGGGACTGCTGAACGGAGATGCCGGCGATGTAGCTAAGAGGGAAATTATAGACCAGGACTGTGTGGATCCACCTCACGCTCATATAGAACGGACCGAAGATGTGGAGAGGAACGCGCCGGAGCAGAGTGACGTTGTGATGAACAGCATCCCAGAGCAGAAGGAAACTAATGAGCAGAAGCTCTATAAGATAGCAAATGAACTTCTGCAGACAGAGAAGGCTTATGTTGCGCGACTCAACTTATTAGATAAGGTGTTTTATGCCAAGCTGTTAGAAGAAGCAAGAAAAGAAACGTTCCCCATGGATGTGGTGAAAAACATCTTCTCCAACATCTCTTCCATTAATACCTTCCACAGCCAGTTCCTCCTGCCTGACCTGGAAAAACGCATGGGAGAATGGTAAGACATTTTTCCTCAAACGTCGACACCTCGCATTGGGGACATCCTACAGAAGCTCACCCCCTTTCTGAAGATGTACGCTGAATATGTGAGGAACTTTGATCACGCCATGGATCTGCTGAAGCAATGGACGGACCGATCGCCTCCGTTTAAAGCCATCATTGTGGAAATCCAGAGTCAAGACGTGTGCGGAAGCCTGACGCTGCAGCACCACATGTTGGAGCCGGTTCAGAGAGTGCCGCGATACGAGATGCTGCTTAAAGACTATCTGAAGAAACTTCCTCAGGATCACATAGACCGGCGGGATGCTGAAAAGTCTTTAGAGATCATTGCCATGGCTGCCACTCATTCCAACACTGCCATTAGAAAAACAGAAAACCTAAAGAAATTGCTGGAGATTTACGAGATGCTGGGGGAGGAAGAGGACATTGTGAACCCTTCAAACGAGTTAATAAAAGAGGGTCATATTCTGAAGCTGGCCGCTAGAAACACTTCAGCCATGGACAGATATCTCTTCCTATTCAACAACATGCTGCTGTACTGCGTTCCAAAGTTCAGCTTGGTGGGACAGAAGTTTACGGTTCGCACACGTATCGGCATCGACGGCATGAATGTGACGGAGACGTACAACGATGATTATCCTCACACCTTTCAGGTTTCAGGGAAGGAACGGACACTGGAGCTGCAGGCCAGCTCTGAACAGGATAAAGTAAGCTGGATtaagGCGTTCCAGCAGACCATTGAAATCTTTCAGCAGAAGAACGAAACATTCAAATCAGCCTCTAAAGAAGTGGCGGATGAGGTTTCTAAAGAGGAGCTGGGGAAGAGAGCCCCGCGCTGGATTCGGGACAATGAAGTGACCATGTGCATGAAATGCAAGGAGCCCTTCAACCCTCTGACCCGCAGGAGACATCACTGCAGGGCATGCGGATATgttgtgtgttataaatgttCGGACTACAAGGCATCGCTGAGGTACGACAGCAACAAATTAAACAAGGTTTGTAAAGACTGTTACTTCATTCTGACTGGAAGAGTGGACTCTGAGGAGCCGGTCAGCGGGAAGAAAAGGGGAATTCTTGAGATTGAAGCAGCTCAGGTCTCAGGAAACAGTTTTCTTTGTGGCTTTCTGCAGTACAGTACAGACCGAACAAAACCGTGTCAAAGGGTCTGGTGTGTAATTCCCCAGCACGACGCGCTCGTTCTTTACCTCTACGGCGCTCCACAGGATGTCAAAGCCCAGTGTACCATACCGCTTCTGGGTTACCAGGTTGAGGACGTCCAGCGCTCTGTGGATCATCCTCCCACCAGCTTCCGTCTGTGCCAGTCCAAATCTGTCCACTGCTTCACTGCCGACACGGAGGAAATGAAACTGCGCTGGCTAAAAGTGATCCGCAAAGCTGTGATCGGTGAGACGCCCGAATGCCAGACGCCGGTCGATGACCTCGCCAACGGTTGCCATGAAGGCACGCCTGATGGCACCTTAAAAGACAAGGCAGTTTTCTAGCTTTTGCATTATGCGTGTAACTCGGCGGAATAGAAATTGTTCATTAGGATGTGAAACCTTCCAGAACAGGTTGGATTTATTTGGGAGCGTATAAGTAGATATgcctttttaatgtattataatgtcAACCACAATcagacagtaaaaacattcagtgtgtgattatttaaatcaataactCAGTTTACGAAAGTTTGTTCGCAGACCAATCTCAGCAAAGTCTGAATAATGCTTTGCGATGTATTAGCCTTTCTCTTTGTGacgtttttaaatttgtatatgCTGTTTGTCGTTTTCAATGTCTCTAAGATTCATGCACTTTATTGCTTTTTGTAAAGTAGgccattaacattaaaatgaatgaataagaaCTGAA

Function

NR:

description
PREDICTED: FYVE, RhoGEF and PH domain-containing protein 4-like

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189448 False 1477 lncRNA 0.40 2 22409487 22411951
TU189467 True 4186 TUCP 0.40 3 22400974 22406982
XM_043265105.1 False 2716 mRNA 0.48 15 22400944 22411957

Neighbor

gene id symbol gene type direction distance location
LOC122363070 mical3a,LOC107559327,LOC107673136,LOC107672585,LOC108414616 coding upstream 1708 22374588 ~ 22399236 (+)
LOC122362522 LOC107670367,LOC107559271,LOC107673148,LOC107738440,LOC556054,LOC108414180,LOC108264794,LOC101481124 coding upstream 138975 22241472 ~ 22261969 (+)
ttc38 ttc38,LOC107722483,LOC107673144,LOC107738443 coding upstream 374487 22016312 ~ 22026457 (+)
mical3a LOC107673136,LOC108414616,LOC108264267,LOC106573174,LOC106561386 coding upstream 385488 21954303 ~ 22015456 (+)
lepa NA coding upstream 478271 21920107 ~ 21922673 (+)
LOC122362770 cotl1,LOC107559813,LOC107722478,LOC107684658,LOC107666224,LOC107738394,LOC107587015 coding downstream 4825 22416782 ~ 22421246 (+)
si:ch211-260p9.3 LOC107587040,LOC107666218 coding downstream 40489 22452446 ~ 22467259 (+)
LOC122362804 cmip,LOC107684659,LOC106560887,LOC106573687 coding downstream 86300 22498257 ~ 22524172 (+)
LOC122362807 srgap1a,srgap1,LOC107670373,LOC108264626 coding downstream 171960 22583917 ~ 22622188 (+)
LOC122362983 hipk2,LOC107722467,LOC107568633,LOC107738404 coding downstream 211167 22623124 ~ 22636865 (+)
LOC122363071 NA non-coding upstream 12329 22387599 ~ 22388615 (+)
G128329 tspan9a,LOC107559293,LOC107738414,LOC107587031,LOC107672591,LOC107084745,LOC108414266 non-coding upstream 290486 22109473 ~ 22110458 (+)
G128318 NA non-coding upstream 331991 22033671 ~ 22068953 (+)
LOC122323089 NA non-coding upstream 565923 21694446 ~ 21835021 (+)
G128251 NA non-coding upstream 759315 21638410 ~ 21641629 (+)
G128377 NA non-coding downstream 122509 22534466 ~ 22535424 (+)
G128379 NA non-coding downstream 124818 22536775 ~ 22543533 (+)
LOC122362809 NA non-coding downstream 126425 22538382 ~ 22539895 (+)
G128385 NA non-coding downstream 138488 22550445 ~ 22551614 (+)
LOC122362810 NA non-coding downstream 148434 22560391 ~ 22563204 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 1759885 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 1800425 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 1844317 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 1851587 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 2307343 20067678 ~ 20093601 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 22849 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 1045143 23457100 ~ 23736848 (+)
G128858 NA other downstream 2037808 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 2171888 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 2882786 25294743 ~ 25309740 (+)

Expression


Co-expression Network