LOC122362809


Basic Information

Item Value
gene id LOC122362809
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22538382 ~ 22539895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU189509
GGGGCTTCCACTGAGTACAGTGTCCTGACATGCctgtaatgtttaatattgctatagtttgtaaaattatctttatttgtttagtgcTTTATGGAATAGATtgtcaaatctttatttttattaaagcagacaCATCAAATGATGGCTGAAGTgaaaaggagaaggagaaaacTGAAGCCAGTTGATGAGGCCATACAGTTCTCACTACTACAGAAAGACAAATCTGGTCTTGAAGGAAGATTCATCAATGATTTTAAAGGcaaAGGTGTGTTTGAGAAAGGAGATTTCCTGCTGGAATATAGAGGGACCTCATAGATAAAGAAGAAATGAACGGAGGCAAAGGATATATCATGATGCACTTAAAGTTTACATCTTTGAGTTTCGCTATAATGGAAAGCTTCTCTGCATTGACGCAGCCCGGGATGATGGTAAA
>XR_006253163.1
CGCTGATTGGCTAATCGCGAAAACAAGATGGCGCCGGTGGGCGTGGTTACAATTTGCCGAAATTTTTAACTTTGAAGAAAGCGAGCGTGACGTTTTGTAACTTCCTGTTTGATCCTGACGGAATCTCTGCACCTAGAGAAGACACCTGTGATGTGAACCTGTTTGAGACGACCATTATATGAAAGcagacaCATCAAATGATGGCTGAAGTgaaaaggagaaggagaaaacTGAAGCCAGTTGATGAGGCCATACAGTTCTCACTACTACAGAAAGACAAATCTGGTCTTGAAGGAAGATTCATCAATGATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189509 True 433 lncRNA 0.37 3 22539029 22539895
XR_006253163.1 False 313 lncRNA 0.43 3 22538382 22539282

Neighbor

gene id symbol gene type direction distance location
LOC122362804 cmip,LOC107684659,LOC106560887,LOC106573687 coding upstream 14210 22498257 ~ 22524172 (+)
si:ch211-260p9.3 LOC107587040,LOC107666218 coding upstream 71123 22452446 ~ 22467259 (+)
LOC122362770 cotl1,LOC107559813,LOC107722478,LOC107684658,LOC107666224,LOC107738394,LOC107587015 coding upstream 117136 22416782 ~ 22421246 (+)
LOC122363070 mical3a,LOC107559327,LOC107673136,LOC107672585,LOC108414616 coding upstream 139146 22374588 ~ 22399236 (+)
LOC122362522 LOC107670367,LOC107559271,LOC107673148,LOC107738440,LOC556054,LOC108414180,LOC108264794,LOC101481124 coding upstream 276413 22241472 ~ 22261969 (+)
LOC122362807 srgap1a,srgap1,LOC107670373,LOC108264626 coding downstream 44022 22583917 ~ 22622188 (+)
LOC122362983 hipk2,LOC107722467,LOC107568633,LOC107738404 coding downstream 83229 22623124 ~ 22636865 (+)
tmtc2b LOC107673141,LOC107722480,LOC107670376,LOC107738412,LOC107587029,LOC108414015 coding downstream 128302 22668197 ~ 22762542 (+)
bicd1a bicd1,LOC107722484,LOC107738411,LOC107587026 coding downstream 277462 22817357 ~ 22849043 (+)
fgd4a LOC107722468,LOC107670369,LOC107587027,LOC107684651,LOC107738409 coding downstream 310031 22849926 ~ 22889500 (+)
G128377 NA non-coding upstream 2958 22534466 ~ 22535424 (+)
LOC122363071 NA non-coding upstream 149767 22387599 ~ 22388615 (+)
G128329 tspan9a,LOC107559293,LOC107738414,LOC107587031,LOC107672591,LOC107084745,LOC108414266 non-coding upstream 427924 22109473 ~ 22110458 (+)
G128318 NA non-coding upstream 469429 22033671 ~ 22068953 (+)
LOC122323089 NA non-coding upstream 703361 21694446 ~ 21835021 (+)
G128385 NA non-coding downstream 10550 22550445 ~ 22551614 (+)
LOC122362810 NA non-coding downstream 20496 22560391 ~ 22563204 (+)
G128431 NA non-coding downstream 401687 22941582 ~ 22944126 (+)
G128451 LOC107722467,LOC107568633,LOC107587022,LOC107738404 non-coding downstream 454203 22994098 ~ 22994341 (+)
G128453 NA non-coding downstream 455856 22995751 ~ 22996031 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 99703 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 126425 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 1897323 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 1937863 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 1981755 20551148 ~ 20556627 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 917205 23457100 ~ 23736848 (+)
G128858 NA other downstream 1909870 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 2043950 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 2754848 25294743 ~ 25309740 (+)
mt2 NA other downstream 2806497 25346392 ~ 25348594 (+)

Expression


Co-expression Network