cdh13 (cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949)


Basic Information

Item Value
gene id cdh13
gene name cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 23457100 ~ 23736848 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU189951
TGGCAGCTCGAGGCAGAGGGGCTTTACTCTCGCGACTCTGGAATTATGAACAGCGCTGGTCTGACCAGCATCTTGTTTTGAACATTATTCCCACTGATCTGAGACCATGGAGTTCGGAACCCGCATTTTCATCGCATTCCTCGTTTCCCAGGTTGTATGCACTGGAGcgcaggaagaggaagagaaggcTGAATGTGTACCGGGATTTCAGGAGAAGGAGTACCAGGTGGAGTACAGTGGAGGGTTCCTCAAAGACGTTCCTCTGCTGCAAGTGGTTTTCGATGACTGCGCTGGAAATGAGGGTCTGGAGTTTGAAGTATCGAACCCTAACTTTCTAATAGACGAGAATCTGAATCTGGTTCCCAGAAGAGACGTGATTGACAGTGGAGATGTCATGTTTATCCACGGTGTCAACGTTCATGTTGATGACATGGCAGAGGTGACCATTTTGGGAGCACCATCTAGATCTCCTCAGACACTCAGGGAGATCCTCGGCCTATCAGACATGATGCCGTACCGATCCAAAAGGTCCCTGCTGGTGCCCCCCATGTTTGTCCCAGAGAACCAGCGAGCCCCCTTCCCCAGGTTAATTGGAAAGTCGCATGTGA
>TU189952
GCTTCAGGCACGGGTACGCTGATAATCACTCTGGAGGACGAGAACGACAACGCTCCCTACGTCTTCCCCTCCGTGGCCCGCGTGTGTGAGGACGCTAAAGACATGAATGTGGTGGTGATCGGGGGACGAGACAAGGACATTCATCCTAATACGGATCCTTTCAAGATCGAACTTGGCAAGCAGCCAGGACTGGAGAAAACATGGAAAATCTCCAGGATCAATGACACTCACTCCCAGATTATGTTGCTGCACAGTCTGAAAAAGGCTAACTACAACCTGCCGCTGGTTCTGACCGACTCTGGCGTGCCTCCAATATCTAACAACACAGAACTGAAAGTTCAAGTGTGCACCTGTAAGAAGAACAGAATGGACTGCAGCCGTGCTGGCTCCATCCAAACAAACCTCTTGCTACTGCTCGGCCTGGTTCTGCTCTCCATCCTCTgcTTGTAAATTCCGCCGATTCTTTCTGTAGTCCTTTTGCAACACTGAAGAAAACCTTCTTCTCTTCTCCACACGCAAACCAGGCCCAGAGAGAAGACTCCCGCCCCCTCCCCAAAAAGACACTTTGCGCCCTTCATTTTTGCTCTCCTCCTTTTCACCATCGTCTCTCTCCATCCCCAACCGGTGCATCTTCACCCTTTTCACCAGGAACTCTCCTTCTCTCCtctccctgcacttcctgtcttCTCATACCTCTGGAATACATCACGGACAGCACCGCCTCAATGCTCGAACTCTCTCTCACTGGACAAAGATATATTGGATGGGGGCAAAGCGATTGGACATTTCGATGTACTTTAGTTTCCTCTGGTTAAAGACTACTGTATTTGATCTTGTTTACTAATGTAAGGGAAGGACACAAGGCCTCTTTAGTCTGCAGTGGTTGTGTTTTCTTAGGGCAGGGTGGTAGCCAGAAGCCTTCAGagtctaaaaaaaaagcatctcttgcgtctttttattttgtttttttggttcagTTGCATTAGTTGTTATGGAGTGGAACACAATATATCTTTATAGTAATGTGTGAAATGGTGGGGGGAAAtgtacactatatatattttattttttaccaatgtacaaatatattaattaacttATGTACTTTGATCACATATTCTTTAAAGACCCCtcacgagaaaaaaaaaaaacaactgtatgtttttgctaaattttaGGGACTATTTCTAATGccattgatgttttttttcttctttttttttctctccatgtACGAGCTCTCGTTTAGAGTGTGGTTCTTGAGTCTGGAGAGCGATTTGCAGACAGAGAGCAAATCTGTCTTGTGATTCTTGTTTCTGATGGTATggcgtttattttatttttctccctcTCCCCTTGGGTCAGAGTCAAAGAGGCCAGGGAAGGCTATTGATTCagtggttctttttttttttttttttttttgcgcttgTGAGAAGAAGACAACAAAAAAGGGAGACAGAAAAAGATAATAGacgaaaaacaaaataaaatgtgtgtgtggctttGTGTGGAAGACCCCGTAAGTTctgaaaatgcaaagaaaaagatGACGTGGTGAATGAGTTTTGTCTGTCTTTTGCACTAATTTAATAAAGCTGTTACTGTACTTCCCAC
>XM_043216624.1
CGGCTGGTTGGGAAGATGAAGGTGGCTTCAGTGCTGGAGAAAGCGTCGCTGATATGGATGCAGGAGGTTGTATGCACTGGAGcgcaggaagaggaagagaaggcTGAATGTGTACCGGGATTTCAGGAGAAGGAGTACCAGGTGGAGTACAGTGGAGGGTTCCTCAAAGACGTTCCTCTGCTGCAAGTGGTTTTCGATGACTGCGCTGGAAATGAGGGTCTGGAGTTTGAAGTATCGAACCCTAACTTTCTAATAGACGAGAATCTGAATCTGGTTCCCAGAAGAGACGTGATTGACAGTGGAGATGTCATGTTTATCCACGGTGTCAACGTTCATGTTGATGACATGGCAGAGGTGACCATTTTGGGAGCACCATCTAGATCTCCTCAGACACTCAGGGAGATCCTCGGCCTATCAGACATGATGCCGTACCGATCCAAAAGGTCCCTGCTGGTGCCCCCCATGTTTGTCCCAGAGAACCAGCGAGCCCCCTTCCCCAGGTTAATTGGAAAGTCGCATGTGATCTCATCTGACATGAAGGAAGACCACATCTTCCGTCTGACGGGAAGGGGAGCAGATCAAGACCCTAAGGGTGTGTTCAGCATCAACCGACTGACGGGAGAGGTGGCAGTCAGCAGAGCTCTGGATCGAGAGGCCATTGCGTACTACCATCTCCAGGTATCCACCACTGACCTAAGTGGCAGATTGGTAGAGGGACCAGTAGACCTGGACGTGTCTGTTATTGACCAGAATGACAACCGTCCGGTGTTCAAGGAGCCGCGTTACTCTGGGGAGGTTCTGGAGGGCTCCCCCACAGGCACTACAGTGATGACCATGACGGCTTACGACGCGGACGATACCAACACGGACAACGCTGTACTACGCTACATCATTGTGAGACAGCTGCCCGATAAACCTTCGCCCAATATGTTCTACATCGACCCGGAGAGCGACATTGTCACTGTGATAGCACCCCATCAGCTCGATAGAGAGACTCTTCCAACCACGCAGTACGAGCTAGAAATTGTGGCGAAGGACATGGCGGGAAGTGAGGTGGGACTGACAGGAACTGCAACAGCAACcatcaccatcacagacaggaACGACCACGCACCTGAGTTTACACACTCACTGTTTCAGGCATCAGTAAATGAGGGATCAACTGGGGTGGTTGTTAACCTGACAGTGGACGACAGAGACGACCCTGCCACTGGAGCCTGGAGAGCTATCTACTCTATCATCAATGGAGATCCCAACCAGAACTTTGAGATACAGACCAACCTGGACAACAATGAAGGGATGCTGTCAGTAATAAAGcCTCTGGACTATGAAAGTTCAATGTTTAACACACTGCTAATAAAAGTGGAAAACGAAGACCCTCTGGTTCCTGATGTTGTGTATGGCCCCAGCTCTACAGCGACGGTTTACATTACAGTTATGGATGTGAATGAAGGACCTGTGTTCTTCCCAGATCCTCTGGTTGTCATCAGAAGAGAAAATATTCCCATAGGGAGCTTTGTGGCCATGCTGAATGCTACTGATCCGGACTACCTACAGACGCAGAGCATAAGGTTCACTGTATTGAGAGACCCAGCAGACTGGCTGATCGTGAACCCCTTCAAAGGCAATGTCACCACCAGGGCGATACTGGACCGCGAGTCTCCACACGTTCACAACAACCAGTACACTGCTCTCTTCATGGCCACAGATAACGGAAGTCCACCCGCTTCAGGCACGGGTACGCTGATAATCACTCTGGAGGACGAGAACGACAACGCTCCCTACGTCTTCCCCTCCGTGGCCCGCGTGTGTGAGGACGCTAAAGACATGAATGTGGTGGTGATCGGGGGACGAGACAAGGACATTCATCCTAATACGGATCCTTTCAAGATCGAACTTGGCAAGCAGCCAGGACTGGAGAAAACATGGAAAATCTCCAGGATCAATGACACTCACTCCCAGATTATGTTGCTGCACAGTCTGAAAAAGGCTAACTACAACCTGCCGCTGGTTCTGACCGACTCTGGCGTGCCTCCAATATCTAACAACACAGAACTGAAAGTTCAAGTGTGCACCTGTAAGAAGAACAGAATGGACTGCAGCCGTGCTGGCTCCATCCAAACAAACCTCTTGCTACTGCTCGGCCTGGTTCTGCTCTCCATCCTCTgcTTGTAAATTCCGCCGATTCTTTCTGTAGTCCTTTTGCAACACTGAAGAAAACCTTCTTCTCTTCTCCACACGCAAACCAGGCCCAGAGAGAAGACTCCCGCCCCCTCCCCAAAAAGACACTTTGCGCCCTTCATTTTTGCTCTCCTCCTTTTCACCATCGTCTCTCTCCATCCCCAACCGGTGCATCTTCACCCTTTTCACCAGGAACTCTCCTTCTCTCCtctccctgcacttcctgtcttCTCATACCTCTGGAATACATCACGGACAGCACCGCCTCAATGCTCGAACTCTCTCTCACTGGACAAAGATATATTGGATGGGGGCAAAGCGATTGGACATTTCGATGTACTTTAGTTTCCTCTGGTTAAAGACTACTGTATTTGATCTTGTTTACTAATGTAAGGGAAGGACACAAGGCCTCTTTAGTCTGCAGTGGTTGTGTTTTCTTAGGGCAGGGTGGTAGCCAGAAGCCTTCAGagtctaaaaaaaaagcatctcttgcgtctttttattttgtttttttggttcagTTGCATTAGTTGTTATGGAGTGGAACACAATATATCTTTATAGTAATGTGTGAAATGGTGGGGGGAAAtgtacactatatatattttattttttaccaatgtacaaatatattaattaacttATGTACTTTGATCACATATTCTTTAAAGACCCCtcacgagaaaaaaaaaaaacaactgtatgtttttgctaaattttaGGGACTATTTCTAATGccattgatgttttttttcttctttttttttctctccatgtACGAGCTCTCGTTTAGAGTGTGGTTCTTGAGTCTGGAGAGCGATTTGCAGACAGAGAGCAAATCTGTCTTGTGATTCTTGTTTCTGATGGTATggcgtttattttatttttctccctcTCCCCTTGGGTCAGAGTCAAAGAGGCCAGGGAAGGCTATTGATTCagtggttctttttttttttttttttttttgcgcttgTGAGAAGAAGACAACAAAAAAGGGAGACAGAAAAAGATAATAGacgaaaaacaaaataaaatgtgtgtgtggctttGTGTGGAAGACCCCGTAAGTTctgaaaatgcaaagaaaaagatGACGTGGTGAATGAGTTTTGTCTGTCTTTTGCACTAATTTAATAAAGCTGTTACTGTACTTCCCACCA

Function

symbol description
cdh13 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within apoptotic process involved in blood vessel morphogenesis. Predicted to be located in plasma membrane. Predicted to be part of catenin complex. Human ortholog(s) of this gene implicated in breast cancer (multiple); lung non-small cell carcinoma; reproductive organ cancer (multiple); and urinary bladder cancer. Orthologous to human CDH13 (cadherin 13).

NR:

description
PREDICTED: cadherin-13-like isoform X2

GO: NA

KEGG:

id description
K06808 CDH13; cadherin 13, H-cadherin

RNA

RNA id representative length rna type GC content exon number start site end site
TU189951 False 608 TUCP 0.51 5 23457100 23579802
TU189952 False 1617 TUCP 0.43 3 23724636 23736846
XM_043216624.1 True 3344 mRNA 0.47 16 23474074 23736848

Neighbor

gene id symbol gene type direction distance location
plcg2 plcg2,LOC107722471,LOC107738392,LOC107684680 coding upstream 151762 23289516 ~ 23305338 (+)
meak7 tldc1,LOC107587014,LOC107722463,LOC107738391,LOC107684679 coding upstream 169037 23283862 ~ 23288063 (+)
cotl1 cotl1,LOC107559813,LOC107722478,LOC107684658,LOC107666224,LOC107738394,LOC107587015 coding upstream 180630 23271267 ~ 23276470 (+)
zgc:56622 zgc:56622,LOC107666229,LOC107738396,LOC107587047,LOC107722465,LOC107559805 coding upstream 190975 23262358 ~ 23266125 (+)
tat tat,LOC107666226,LOC107559814,LOC107587016,LOC107684657 coding upstream 198651 23250875 ~ 23258449 (+)
zgc:173742 zgc:173742,LOC107553995,LOC107684664,LOC107749320,LOC108415671,LOC106560872 coding downstream 52545 23789393 ~ 23814740 (+)
si:dkey-246g23.2 si:dkey-246g23.2,LOC107749300,LOC107553994,LOC107684666,LOC107670153,LOC107738383,LOC108415329 coding downstream 81205 23818053 ~ 23853275 (+)
kcng4a kcng4a,kcng4,LOC107749318,LOC107553964,LOC107738382,LOC107684667,LOC107670163 coding downstream 122188 23859036 ~ 23892165 (+)
si:dkey-246g23.4 si:dkey-246g23.4,LOC107553963,LOC107684669,LOC107749297,LOC107738435 coding downstream 163078 23899926 ~ 23911982 (+)
wfdc1 wfdc1,LOC107553961,LOC107749317,LOC107684670,LOC107583842,LOC107670154 coding downstream 179081 23915929 ~ 23927588 (+)
G128699 NA non-coding upstream 97543 23358451 ~ 23359557 (+)
G128696 NA non-coding upstream 120011 23335791 ~ 23337089 (+)
G128476 NA non-coding upstream 376790 23068310 ~ 23080310 (+)
G128475 NA non-coding upstream 390032 23066812 ~ 23067068 (+)
G128470 NA non-coding upstream 397159 23057387 ~ 23059941 (+)
G128725 NA non-coding downstream 48176 23785024 ~ 23787163 (+)
G128753 NA non-coding downstream 291641 24028489 ~ 24029817 (+)
G128770 NA non-coding downstream 319872 24056720 ~ 24063271 (+)
G128772 NA non-coding downstream 321505 24058353 ~ 24066103 (+)
G128803 NA non-coding downstream 560261 24297109 ~ 24297333 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 1018421 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 1045143 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 2816041 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 2856581 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 2900473 20551148 ~ 20556627 (+)
G128858 NA other downstream 712917 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 846997 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 1557895 25294743 ~ 25309740 (+)
mt2 NA other downstream 1609544 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 2184419 25921267 ~ 26174156 (+)

Expression


Co-expression Network