si:ch73-62b13.1 (si:ch73-62b13.1,LOC107749314,LOC107740436,LOC107672215,LOC107553958,LOC107583921,LOC107664683,LOC108425440)


Basic Information

Item Value
gene id si:ch73-62b13.1
gene name si:ch73-62b13.1,LOC107749314,LOC107740436,LOC107672215,LOC107553958,LOC107583921,LOC107664683,LOC108425440
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 24308176 ~ 24314980 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216488.1
CTCAGAACGCGTATCGTTTTGGCTGATATCGGTGGGCTGACTCAGATCCTCAGGACTGGATAGCTGGATAGCAACTTTACTGGATCGAGTCCATGCGTGTTTTATTGGGGAATATTTCTGCACGTCGTGAGTGAGTGAAGTATGTGATGGTGACGGAGCAGGATGGAGTGCTCGTGGAAGACTCTACTGCTGCTTGTGTGCACGTCTTTGGGGGTGCAGTACACTGCCATCCGCTCCCTCCACGACTCCTTCAGTGGCCCATGCCAAGACTCCGCCCACTGCCAAGGACGCCAGGGTAAAGAGCAGAGATGGAAATCTCTATGCGATGACAGCCGTGTCCCTGATGAGACTAGTGCTGCCGCCTCTCGGAAGCACATCCTTCTGTTTGCGCAAACCCGCAGTGGATCCTCATTTACCGGACAACTTTTCAATCAACATCCTggcattttttatgtttttgagcCCCTTTTCCACGTGCAACAGGCCTTCACCAATTCTAGCAGTCGTATGCAAAGGGCTTTGGATGGCAGAGCTCTTCTGGGAGCCTACCGAGACCTCCTACTCAATCTCTACAACTGTGACTTCAGCTTCCTGGAGAGCTACATTCGCCCCGAACCGCAGGATCACGTGACCGGGGCCTTTTTCCGCCGCAGCTCCAGTCACGCCTTGTGCACTCCACCTGTCTGCCAGGAAGGTGGCGAGGTGATTCTAGCAGGCCAACCGGATGAAGTCTGGTGCCCGAAAAAATGCCAGGCCTTGAACCTCACACTAGCCTCTCAGGCTTGCCAAGCACGAACCCACGTGGCCATAAAAACAGTTCGTATCCCAGAGATAGGCGACCTACGTACGCTGTCGGAAGACCCCCGTTTAGATTTGCGCATCGTCCATTTGGTGAGAGACCCCCGAGCCATTCTCGCCTCCCGCATGACTGCTTTTGCTGGTAAATTCAGGGCCTGGAAGATCTGGAACGCCACCGGCCGCCAACCACGGTACGTGGACCTGACGCAGATAACGAGAACCTGCAGAGATATTGAGTATTCTGTGGAGACCAGCCTGCAGAAACCCACATGGCTGAGGGGTAGGTATCTGTTGGTGCGCTATGAAGACTTGGCCTTGAATCCTGAGCAAAAGGCCAAGGAGATATACAGATTTCTAGGGCTGGACCTGCATCAAAGAGTCCTCACATGGGTTGCTCATAACACCAATGGCACTGTCCCATCTTCTTCAGAGTGGAACTATAAGTACTCCACTACAAGAGACTCGAAAGCCACAGCTCAGAGCTGGAGAGTACATCTAAACATTGACATTGTTAAGACAGTTCAATCTCTTTGTAACAGAACTCTTTCTCTACTAGGTTATAAGCTTGTTCAGTCTGTAGATGAACTGAGGAATATAACAAAAAGTTTAATGGAGCCCAGGACATGGTAAAGGTCATTTTTAAGCAAAGTACTAATTCATGGCTTATGTTGCATTCAGTGGATACACCAACAAACTACATTTTGTTATggaatttttcatatttttctgtttgttttgtcaaCTTGCATACCAACTGTCAATGCCATGTACTGTAAATGCAACATTATAGATCATAATTTGGTGAAAAtcttattcattaataataattaggttTTGATTATGATGCTTGGTACCTTTccttaaaggattagttcatccaaaaaataattctgtaatTATTCCCTTACTTTCAATTCTCAGTGATTTTTGCCCATAAATTTGAAGTcaaatgtaactaaaatgtt

Function

symbol description
si:ch73-62b13.1 Predicted to enable N-acetylglucosamine 6-O-sulfotransferase activity. Predicted to be involved in N-acetylglucosamine metabolic process and sulfur compound metabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in trans-Golgi network.

NR:

description
Carbohydrate sulfotransferase 1

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216488.1 True 1763 mRNA 0.47 3 24308176 24314980

Neighbor

gene id symbol gene type direction distance location
zgc:153031 zgc:153031,LOC107664682,LOC107583831,LOC107672313,LOC107553959 coding upstream 16717 24287138 ~ 24291459 (+)
cry1b cry1ab,LOC107672239,LOC107553944,LOC107583830 coding upstream 21401 24277282 ~ 24286775 (+)
LOC122362775 cdh13,LOC107722459,LOC107684661,LOC107738387 coding upstream 126634 24134413 ~ 24181542 (+)
uri1 uri1,LOC107553985,LOC107684674,LOC107670159,LOC107583840 coding upstream 338117 23963028 ~ 23970059 (+)
spata2l LOC107670151,LOC107748780 coding upstream 347153 23958161 ~ 23961023 (+)
si:dkey-103i16.6 si:dkey-103i16.6,LOC107749280,LOC107664689,LOC107553976,LOC107672161 coding downstream 23911 24338891 ~ 24350157 (+)
slc17a8 slc17a8,LOC107553956,LOC107672209,LOC107686235,LOC107583818 coding downstream 145936 24460916 ~ 24472951 (+)
nr1h4 nr1h4,LOC107749275,LOC107686236,LOC107672305,LOC107740216 coding downstream 159257 24474237 ~ 24488921 (+)
LOC122322915 LOC107553937,LOC107749305,LOC107686321,LOC107686322,LOC107553936 coding downstream 178953 24493933 ~ 24502864 (+)
LOC122322916 LOC107749305,LOC107686322,LOC107553937,LOC107686321,LOC107553936 coding downstream 197152 24512132 ~ 24522487 (+)
G128804 NA non-coding upstream 10331 24297609 ~ 24297845 (+)
G128803 NA non-coding upstream 10843 24297109 ~ 24297333 (+)
G128772 NA non-coding upstream 242073 24058353 ~ 24066103 (+)
G128770 NA non-coding upstream 244905 24056720 ~ 24063271 (+)
G128753 NA non-coding upstream 278359 24028489 ~ 24029817 (+)
G128816 NA non-coding downstream 30220 24345200 ~ 24382712 (+)
G128854 NA non-coding downstream 116188 24431168 ~ 24431809 (+)
LOC122363046 NA non-coding downstream 118611 24433591 ~ 24446100 (+)
G128855 NA non-coding downstream 120094 24435074 ~ 24435380 (+)
G128841 NA non-coding downstream 121058 24436038 ~ 24440532 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 571328 23457100 ~ 23736848 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other upstream 1869497 22434806 ~ 22438679 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other upstream 1896219 22400944 ~ 22411957 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 3667117 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 3707657 20589684 ~ 20600519 (+)
G128858 NA other downstream 134785 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 268865 24583845 ~ 24588337 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other downstream 979763 25294743 ~ 25309740 (+)
mt2 NA other downstream 1031412 25346392 ~ 25348594 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 1606287 25921267 ~ 26174156 (+)

Expression


Co-expression Network