ttc38 (ttc38,LOC107722483,LOC107673144,LOC107738443)


Basic Information

Item Value
gene id ttc38
gene name ttc38,LOC107722483,LOC107673144,LOC107738443
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 22016312 ~ 22026457 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216571.1
AGTCTGATTCGTGAACGAATCTTGTTGTGAACTGGTTCGAACGAGtcatcagaaatgtttgattTCACAGGCGGAAGCTCACACGTCTGTCTGTCATCGCCAAAGGAAAACAGGCTGCGAGACTGAACATGTCGAGTTTCCGAGATTGTAAGGCATGGGAATCAGAAAGTCTGCCGCTGTCCACCAGCAGTAATGAGGCCTGCAAACTATACGACGCTATACTGTCTCagTACGTGACCTGGCGTAATAATGAGACGCTGGGAGGAATAGAAGGCTGTATTACGGCCATCAAAGCAGCAGACCCGGACTTTGTGATGGGTCACGTGATCTCTACTGGGCTGGAGTTGGTGGGAACAGGAAGTTCGGTCCTGCGGGACGAGAGATTGGCCGGCGCGGTGAGGAGGACCGTGGAGCTGGCCAGCGCTCAGGAGCTCACGCCTAGAGAGAGGAACCACGTGAAAGCCGTGGAGCTCTTCTCTAAAGGAGCCCTACATAAAGCCTGTGAGGTTTGGGAGGGTATTTTGGCGGATCACCCCACAGACATGCTGGCACTGAAGTTTGCCCATGATGGGTTCTTCTACCTGGGTGAACAGACTCAGATGAGGGACTCTGTGGTCAGGGTTCTGCCCCACTGGAAACCACATATGCCGTTCTACAGttatcttAAAGGCATGTATTCCTTTGGGCTTCTTGAGAACCGTTTGTATGATGAAGCtgaaaaaatggcaaaagagGCCCTGGCTCTGACCCCTGAGGACGGATGGAGTGTCCACGCTGTGGCTCATGTTCATGAGATGAAGGCAGAGATGGACAAGGGACTGAAGTTTATGGCCTCTACCGAGAAAGATTGGATGGTGTGTGACATGCTGGCGTGTCATAATTACTGGCACTGGGCTCTATATCACATTGAAAAgGGTAATTATGAATCAGCTTTGAAGATTTTTGATGAGCAGGTTTCTCGGCGCTGTGTGAAGTCTGGAGCCATGCTGGACGTCGTAGACTCTTGTTCGTTGCTCTACAGACTAGAGatggaggGTGTGAGCGTGAAGGATCGTTACCGAGAGCTGCTGCAGGTGACCCAGCCACATACAGAAGACCACACGTTACTTTTTAATGACCTGCACTTCCTCATGGCTTCCCTGGGCAGCAAGGAGACCGCCACCACTCAGCGCCTGCTGGAGAGTCTCCAGGAACTGGCTAAAGACCCAGCTGAGAACCATCAGCTGCAGCTAGCCGAGCGTGTGGGGCTGCCCATGTGTCAGGCTCTGCTGGAGTATGACCAGGGAAACTACAGCCAGGCCGTGGAGCTGCTCAAACCCATCAGAGACCGCTTTGTAGAGATAGGGGGCAGTGACGCACAGAGAGATGTTTTCAGTCAGCTCCTTATTCATGCTGCCATGAAGTCTGGAGACAAAGAACACCAACGATTTGCCagATGCATGCTGATCGAGAGAGACGCAGTGCGGCCAAACTCCCCGCTCACAGACCGGCTGATCCAGAGAGCCCACTCCTTGCATGTTTAAATTCAGACCCCATTCCTCGCATGGTTAACAGCCTGTTCTCTCTTGGTTTAATTACGGGGTGCTTTCCTAACACATTTAACTGTAGACATTAGATCAGAGAGCCCAAGAGTTTCCACCCGAAGAAAGTCTTGTGTTTAATGGGTTCGCTCCTCCAACAGTGTTAAACTGTTAGTCTGGTCTCTTACTCCTACGTCGCGAGACATAAACGAAATGGAAAGTCTTTGAAAAGATTTTCCTTAGCGCTACGTGTTAATCAAGTCCGAACAGTAGGCACCGAACAAATGATGGTGATTATTCAATGCTGTGTGcgttaaaaataaacttgcaaATATGCCTCCAGACTTTTGAATCtgtaatgaagaaataaacaattCCACAAGCTTTAcagacaaa
>XM_043216572.1
TCACAGGCGGAAGCTCACACGTCTGTCTGTCATCGCCAAAGGAAAACAGGCTGCGAGACTGAACATGTCGAGTTTCCGAGATTGCATGGGAATCAGAAAGTCTGCCGCTGTCCACCAGCAGTAATGAGGCCTGCAAACTATACGACGCTATACTGTCTCagTACGTGACCTGGCGTAATAATGAGACGCTGGGAGGAATAGAAGGCTGTATTACGGCCATCAAAGCAGCAGACCCGGACTTTGTGATGGGTCACGTGATCTCTACTGGGCTGGAGTTGGTGGGAACAGGAAGTTCGGTCCTGCGGGACGAGAGATTGGCCGGCGCGGTGAGGAGGACCGTGGAGCTGGCCAGCGCTCAGGAGCTCACGCCTAGAGAGAGGAACCACGTGAAAGCCGTGGAGCTCTTCTCTAAAGGAGCCCTACATAAAGCCTGTGAGGTTTGGGAGGGTATTTTGGCGGATCACCCCACAGACATGCTGGCACTGAAGTTTGCCCATGATGGGTTCTTCTACCTGGGTGAACAGACTCAGATGAGGGACTCTGTGGTCAGGGTTCTGCCCCACTGGAAACCACATATGCCGTTCTACAGttatcttAAAGGCATGTATTCCTTTGGGCTTCTTGAGAACCGTTTGTATGATGAAGCtgaaaaaatggcaaaagagGCCCTGGCTCTGACCCCTGAGGACGGATGGAGTGTCCACGCTGTGGCTCATGTTCATGAGATGAAGGCAGAGATGGACAAGGGACTGAAGTTTATGGCCTCTACCGAGAAAGATTGGATGGTGTGTGACATGCTGGCGTGTCATAATTACTGGCACTGGGCTCTATATCACATTGAAAAgGGTAATTATGAATCAGCTTTGAAGATTTTTGATGAGCAGGTTTCTCGGCGCTGTGTGAAGTCTGGAGCCATGCTGGACGTCGTAGACTCTTGTTCGTTGCTCTACAGACTAGAGatggaggGTGTGAGCGTGAAGGATCGTTACCGAGAGCTGCTGCAGGTGACCCAGCCACATACAGAAGACCACACGTTACTTTTTAATGACCTGCACTTCCTCATGGCTTCCCTGGGCAGCAAGGAGACCGCCACCACTCAGCGCCTGCTGGAGAGTCTCCAGGAACTGGCTAAAGACCCAGCTGAGAACCATCAGCTGCAGCTAGCCGAGCGTGTGGGGCTGCCCATGTGTCAGGCTCTGCTGGAGTATGACCAGGGAAACTACAGCCAGGCCGTGGAGCTGCTCAAACCCATCAGAGACCGCTTTGTAGAGATAGGGGGCAGTGACGCACAGAGAGATGTTTTCAGTCAGCTCCTTATTCATGCTGCCATGAAGTCTGGAGACAAAGAACACCAACGATTTGCCagATGCATGCTGATCGAGAGAGACGCAGTGCGGCCAAACTCCCCGCTCACAGACCGGCTGATCCAGAGAGCCCACTCCTTGCATGTTTAAATTCAGACCCCATTCCTCGCATGGTTAACAGCCTGTTCTCTCTTGGTTTAATTACGGGGTGCTTTCCTAACACATTTAACTGTAGACATTAGATCAGAGAGCCCAAGAGTTTCCACCCGAAGAAAGTCTTGTGTTTAATGGGTTCGCTCCTCCAACAGTGTTAAACTGTTAGTCTGGTCTCTTACTCCTACGTCGCGAGACATAAACGAAATGGAAAGTCTTTGAAAAGATTTTCCTTAGCGCTACGTGTTAATCAAGTCCGAACAGTAGGCACCGAACAAATGATGGTGATTATTCAATGCTGTGTGcgttaaaaataaacttgcaaATATGCCTCCAGACTTTTGAATCtgtaatgaagaaataaacaattCCACAAGCTTTAcagacaaa

Function

symbol description
ttc38 Orthologous to human TTC38 (tetratricopeptide repeat domain 38).

NR:

description
tetratricopeptide repeat protein 38

GO: NA

KEGG:

id description
K24942 TTC38; tetratricopeptide repeat protein 38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216571.1 True 1916 mRNA 0.50 14 22016312 22026457
XM_043216572.1 False 1847 mRNA 0.50 14 22016376 22026457

Neighbor

gene id symbol gene type direction distance location
mical3a LOC107673136,LOC108414616,LOC108264267,LOC106573174,LOC106561386 coding upstream 856 21954303 ~ 22015456 (+)
lepa NA coding upstream 93639 21920107 ~ 21922673 (+)
LOC122323126 LOC107738418,LOC107723941,LOC107672595,LOC107563412,LOC100334116,LOC107673134,LOC107559839 coding upstream 334477 21656321 ~ 21681835 (+)
LOC122363109 cacna2d1,LOC107672590,LOC107738419,LOC107673139 coding upstream 377990 21550145 ~ 21638322 (+)
pclob LOC107559387,LOC107723935,LOC107672584,LOC107665542,LOC107738431,LOC107563410 coding upstream 470178 21477328 ~ 21546134 (+)
LOC122362522 LOC107670367,LOC107559271,LOC107673148,LOC107738440,LOC556054,LOC108414180,LOC108264794,LOC101481124 coding downstream 215015 22241472 ~ 22261969 (+)
LOC122363070 mical3a,LOC107559327,LOC107673136,LOC107672585,LOC108414616 coding downstream 348131 22374588 ~ 22399236 (+)
LOC122362770 cotl1,LOC107559813,LOC107722478,LOC107684658,LOC107666224,LOC107738394,LOC107587015 coding downstream 390325 22416782 ~ 22421246 (+)
si:ch211-260p9.3 LOC107587040,LOC107666218 coding downstream 425989 22452446 ~ 22467259 (+)
LOC122362804 cmip,LOC107684659,LOC106560887,LOC106573687 coding downstream 471800 22498257 ~ 22524172 (+)
LOC122323089 NA non-coding upstream 181291 21694446 ~ 21835021 (+)
G128251 NA non-coding upstream 374683 21638410 ~ 21641629 (+)
G128216 NA non-coding upstream 547759 21466778 ~ 21468553 (+)
G128158 NA non-coding upstream 850239 21165272 ~ 21166073 (+)
G128157 LOC107559445,LOC107665544,LOC107710380 non-coding upstream 853561 21161886 ~ 21162751 (+)
G128318 NA non-coding downstream 7214 22033671 ~ 22068953 (+)
G128329 tspan9a,LOC107559293,LOC107738414,LOC107587031,LOC107672591,LOC107084745,LOC108414266 non-coding downstream 83016 22109473 ~ 22110458 (+)
LOC122363071 NA non-coding downstream 361142 22387599 ~ 22388615 (+)
G128377 NA non-coding downstream 508009 22534466 ~ 22535424 (+)
G128379 NA non-coding downstream 510318 22536775 ~ 22543533 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other upstream 1375253 20634845 ~ 20641059 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other upstream 1415793 20589684 ~ 20600519 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other upstream 1459685 20551148 ~ 20556627 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other upstream 1466955 20545992 ~ 20549357 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 1922711 20067678 ~ 20093601 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 374487 22400944 ~ 22411957 (+)
G128367 LOC107722471,LOC107738392,LOC107587041 other downstream 408349 22434806 ~ 22438679 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other downstream 1430643 23457100 ~ 23736848 (+)
G128858 NA other downstream 2423308 24449765 ~ 24457560 (+)
LOC122323037 NA other downstream 2557388 24583845 ~ 24588337 (+)

Expression


Co-expression Network