LOC122322966


Basic Information

Item Value
gene id LOC122322966
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5919685 ~ 5920943 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216584.1
GGCTCTGTTTTTTAACCggtttgattttgttctttccTATCGACCAGGATCCAAGAATTCTAAACCAGATGCACTTTCGAGACAATTTGACCTGCCAGAGGAGGAGTCCAAGCCAGAGTCCATCTTACCCACCACCAGAATAGTAGCAGCTATCCAGTGGGGCATGGAGGCAGCCATTAAGAAAGCCCAAAACCAGCAGCCAGATCCAGGTAATGGTCCACCAGGACGCCTCTTTGTACCTAATCAACTACGTTCTGATGTGTTGCAGTGGGCACATGCTTCCCCCCCTTCTGGCCATCCTGGGGCTACTAGAACATGCAAACTTATCCGAAGGAGGTTTTGGTGGCCAAAGCTGCAGGAGGATGTCAAGACTTTTGTTGCTGCATGTACTGTGTGTGCCCAGAATAAGGATCCCAGAACCCACCCTCAGGGACTACTGCATCCCCTCCCTATCCCTAAACATCCATGGTCACACATATCTCTGGACTTTGTCACAGGTCTACCTAAATCTCAAGGAGCCTGAAGTATGTGTTCCAGCTGCTGCTCAAATGGTTCGACGTTGTCGACAGACCTGGCAGAAGGCACGGGCAGCTCTACTGAAAGCTTCTCAACAACAGCGGAGACAATCAAACCGGAGGCGGAGGCTGGGACCAATGCTTCGTCAAGGTCAAAGGGTGTGGCTGTCCACCAGAGACCTTCCGCTGCGAGTGGAATCTCGCAAACTGGCTCCACGTTATATTGGCCTTTTAAGATCCTCAGGAAGATATGTAATACAATTACAATTCCTAGTTAATATATTCACTCTCCAGCAATCCAGGATGTga

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function
GO:0019001 guanyl nucleotide binding molecular_function
GO:0001882 nucleoside binding molecular_function
GO:0001883 purine nucleoside binding molecular_function
GO:0032549 ribonucleoside binding molecular_function
GO:0032550 purine ribonucleoside binding molecular_function
GO:0032561 guanyl ribonucleotide binding molecular_function

KEGG:

id description
ko04330 Notch signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216584.1 True 824 mRNA 0.50 2 5919685 5920943

Neighbor

gene id symbol gene type direction distance location
LOC122322887 si:dkey-47k20.3,LOC107569155,LOC107741380,LOC107676312,LOC107697634,LOC107741381,LOC107557170,LOC107748085,LOC107676311,LOC107748086 coding upstream 5243 5911025 ~ 5914442 (+)
LOC122362979 si:dkey-47k20.2,LOC107676311,LOC107569153,LOC107741377,LOC107697634,LOC107741381,LOC107557170,LOC107569155,LOC107569150,LOC107748086 coding upstream 13770 5902171 ~ 5905915 (+)
LOC122362980 si:dkey-47k20.1,LOC107569154,LOC107676314,LOC107676311,LOC107569153,LOC107741377,LOC107697634,LOC107741381,LOC107557170 coding upstream 18917 5734427 ~ 5900768 (+)
LOC122322960 si:dkey-47k20.1,LOC107569154,LOC107676314,LOC107568278,LOC107703386,LOC107712093,LOC107715176,LOC107703357,LOC107569155 coding upstream 186657 5729552 ~ 5733028 (+)
LOC122322885 v2rh1,LOC107557170,LOC107703386,LOC107748085,LOC107568278,LOC107712093,LOC107569154,LOC107676314,LOC107569152,LOC107697635 coding upstream 203422 5712494 ~ 5716263 (+)
LOC122323201 LOC107557170,LOC107748085,LOC107741381,LOC107748086,LOC107697634,LOC107557168,LOC107741383,LOC107569151,LOC107707880,LOC107569150 coding downstream 348 5921291 ~ 5924563 (+)
LOC122323198 LOC107741381,LOC107697634,LOC107569150,LOC107557170,LOC107748085,LOC107697635,LOC107569152,LOC107557168,LOC107748086 coding downstream 7463 5928406 ~ 5932318 (+)
LOC122323199 LOC107569152,LOC107697635,LOC107557170,LOC107741381,LOC107748085,LOC107697634,LOC107569150,LOC107569151,LOC107741383 coding downstream 19008 5939951 ~ 5943398 (+)
LOC122323197 LOC107569152,LOC107697635,LOC107557170,LOC107741381,LOC107697634,LOC107748085,LOC107569150,LOC107557168,LOC107748086,LOC107741383 coding downstream 33307 5954250 ~ 5958173 (+)
LOC122323200 LOC107569152,LOC107697635,LOC107557170,LOC107748085,LOC107741381,LOC107697634,LOC107569151,LOC107557168,LOC107748086 coding downstream 49344 5970287 ~ 5973815 (+)
G124622 v2rx1,LOC107703364,LOC107568274,LOC107716020 non-coding upstream 259452 5659906 ~ 5660233 (+)
G124595 NA non-coding upstream 564705 5354713 ~ 5354980 (+)
G124544 NA non-coding upstream 736148 5011405 ~ 5183537 (+)
G124547 NA non-coding upstream 861847 5056750 ~ 5057838 (+)
G124533 NA non-coding upstream 1011516 4903768 ~ 4908169 (+)
G124672 NA non-coding downstream 100298 6021241 ~ 6021636 (+)
G124673 NA non-coding downstream 102716 6023659 ~ 6023991 (+)
G124703 NA non-coding downstream 306538 6227481 ~ 6230584 (+)
LOC122362614 NA non-coding downstream 369579 6290522 ~ 6290901 (+)
G124711 NA non-coding downstream 374987 6295930 ~ 6296436 (+)
G124612 v2ra17,LOC107568349,LOC107568268,LOC107703349,LOC107695207,LOC107722082,LOC105904790,LOC107695201 other upstream 290032 5623453 ~ 5629653 (+)
LOC122323196 v2ra17,v2ra16,LOC107695207,LOC107568277,LOC107716837,LOC107695208,LOC107568268,LOC107568349 other upstream 294708 5619470 ~ 5624977 (+)
LOC122363125 LOC107702192,LOC107742943,LOC107564270,LOC107557162,LOC107702193,LOC107742944,LOC107748627,LOC107671076,LOC107748628,LOC107564269,LOC107702194,LOC107671077,LOC107557163 other upstream 423892 5492237 ~ 5495793 (+)
G124598 NA other upstream 524373 5394895 ~ 5395312 (+)
G124580 NA other upstream 689739 5228563 ~ 5229946 (+)
G124661 NA other downstream 55267 5976210 ~ 5979282 (+)
LOC122362599 LOC107557170,LOC107748085,LOC107741383,LOC107569151,LOC107741381,LOC107697634,LOC107697635,LOC107568278,LOC107712093,LOC107671063,LOC107569152 other downstream 99606 6020549 ~ 6029121 (+)
G124707 NA other downstream 370548 6291491 ~ 6291925 (+)
G124727 LOC107750410,LOC107695433,LOC107548924,LOC107739781,LOC107739761,LOC107564274,LOC107702188,LOC107728083,LOC107739792 other downstream 618304 6539247 ~ 6540907 (+)
G124881 LOC102215562 other downstream 1105375 7026318 ~ 7027135 (+)

Expression


Co-expression Network