capn12 (capn12,LOC107657473,LOC107757007,LOC107554500,LOC107560139,LOC107758230)


Basic Information

Item Value
gene id capn12
gene name capn12,LOC107657473,LOC107757007,LOC107554500,LOC107560139,LOC107758230
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 841411 ~ 862016 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216702.1
GGGATGCGCTGCTCCTACGAACTTCTTTCAGAAGTTCAGAAATTTCAGCACGGGCTGCGACAGCACTACCCCATCCGAAGAGATGTCCGAGTTAGGCTCCATTGACAATCCGGTGAAGTTCAATGATCAAGACTACGACGCCCTGCTGCAGAAGTGCCTCAAATCTGCGGCTCTGTTCTCTGACACGGTGTTCGGGGCGAACCAGAGCTCCCTCGGTACTCCAGCGGATCCTGATCCTAAAAAGGCAGTGAAGTGGCTGCGTCCGAAGGAAATCACAAGTAACGCTGTCTTTGTTGAGGGCACCATGGGCACCACCGATATCTGCCAGGGCCAGCTGGGTAACTGCTGGCTGTTGGCGGCCCTGTCCTGTCTCACCATGCATCCGCCTCTGTTTGTGAAAGTGGTTCCAGCTGGACAAAGCCTGAGTGAATCTTACGCTGGCATCTTTCGTTTTAGGtTCTGGCAGTATGGTGTGTGGGTGGAGGTGGTAGTGGATGACAGGCTGCCTGTGAGAGAGGGCCGTCTGCTTTTCAGCTACTCTCGCACCACCAACGAGTTCTGGAGCGCCCTGGTGGAGAAAGCTTATGCCAAGCTGATTGGTTCTTATGGCAGTCTGAAGGGGGGAATCATCTCAGAGGGAATGGAAGATTTTACTGGGGGCATTGCCTACTCCCTCCCCGTGTCTTCTCGGGCCCCTCGCATGCTCTGGAGGGCCGTCACCGCTGCCCTGGCTAGGAACAGCCTGCTCAGCTGCTTCATACATGCTGCAAATGTAAAGGAGATTGGCACTGTGACATCAGAGGGTCTTATCAAAGGTCATGCATATGCCATCACAGATACAGATAAGgtCCAGAAAGCGTCTGAAGAGGTCTTACTGCTGAGGCTGCGTAACCCCTGGGGGTTTGTGGAGTACTGTGGACCCTGGAGTGACAAgtGTAAAGACTGGGACGCTATAGATAACACCCAGAAGGCCAGACTTGAGTTGGTGAAAGTTGAAGATGGAGAATTCTGGATTGGAATAGAAGACTTTTGTCGGCTGTTTAATACCGTGGAAATGTGCAGCGTGAACCCGGATTCGATGTCAGGGGAGGCGAGTGAAGACACAGCCACCGCGTCCTGGACATTAAGCTCACATCAAGGAAACTGGGTCCCAATGTGTTCTGCAGGGGGCAGCCGACGATACCCCAGATCCTTTTGGAAAAACCCTCAGTTCCAGATGGTTCTGTCTGAGAAAGATGTGGATGATCACGATTATGGAGAAGATGAAGAAGGGGAGGAAGGAGATGGAGAAGATGATGAAGTAGGTGTTGTGGTGGCTCCTGTGAGCAAGACTGAGAAacagggagagaaaaagaagaagtgCACAGTACTGGTGGAGCTTCTCCAGAAATACAGGAGACAGAAAGATAAAGTCAACTTTCTCTACATCGCATTTCACATCTACAAGGTTCCCCCTGAGCTGCAGGACAAACCGGGATCTCTGGACCAGCAGTTCTTCTCCAACACCAGTCCAGTTGCCCGCTCTGGAAAGTACCGTAGCATTAGGAGCGTGTGGCGGAAGGTGCACCTAGAACCTGGCAGTTATGTCATCCTAGCCTCCACCTACAGGCCCAACCAGCAGGGGGAGTTCTTCCTCCGCGTTTACACCCAAACCGGCAACATACAGGGGTTCCAGGATTTCCCCTGCACCAACAACTACTCTGTGATGGTAATGTCAAAGCCAGTCTTACCTGAGGATCAGTTTAGAGTGCAGAAGTGGTTTGATGAAAAGGCTGGGTCGGATGACAGAGTGAATGCTGTGCAGTTCATGAACCTGGTGAACTCAGtgttggAAAAAGACTATGAACTTCCACTGGAGACCTGCAGACAGCTCATCTTTGGAGAAGATACTGGTGGCAGAGGCCGTCTGAGCAGAGCTCAAGCAGAGAAGCTGCTCACCTCCCTACGCAATCTGCAGTCTATCTTTTTCCAGTTTGATGAGGATTCGTCAGGAACCATGAGTCCGTTTGAGCTCATTTTGGCTTTGAATGCTGCAgGTGTGGAGTGTGACAATGTTGTGGTGCAGTTGTTGTGGGAGAGGTTCGGCGCTGGTGAACAATACCTGCCTTTCTATGGCTTTGTGTCTTGTGTTGCCAGACTGCAGGTGCTCTTTGATCTTTTCGAGTCGGAGACCAACCCAGAGGTGAAGGACAACGGCATCAACGCTTGGCTGCTCAAGCTGTTGGCTGTGTGAGCCTGTCCAGACCCGACACCTCAGCGGGACGGACCTGCTAGGCCAAGACTACTCTGACGTCATCCACCTGGGCCTACGTCTCCCACATCTCCCCCTCTTCTATCTCATTTGTGATCTTTCGGACCTTTGCCCTGCAGTTGCTTCCACCCACTCATCACTCCATCAGTTTGGGGTCTATGACCATGTAGGTCATTACTGCCTGGATACAAAATTTCATCCCCCTCGCTCCACCCTAACAcagcgtgtgcgtgtgtgtgtgtgtgtgtttgcgttcaTAATAATCccaacatttgaatattttaataggaatatttttcttgtaaatgaTCATTATAGCATCGTTAACTCGCTCTCTCGTCATCCCAAACCcaaatgactttatttcttttgtggAGCGCAAAAGAAGATGTTTTACGGGATGCCCAAGCTGCTCTTTTACCACgtgcaatgaaaatgaatagagACGGTTGTGATGGCCGTTCACTTTGATTGTTGGAGAGGCTTGGGCATTCTTCCAAACATCTTCCTCTGtgttacaaacaaaaaagaaagccGTATGCATTTgtcatgaatgtaaatgtgaccaatctatatttaataacaacTATATTTCTAGCACATTCGTCCATTTAATTAGCAGAGCTGtctattaatgttaatttagcGGGATTTAGTGCCGGAAAATATTGATTCGtgattaatcaaaatatcatGCAGTTAACTAAATGAAATTTTGACTCACTGATTGCTCTAATTATGAGTGACGCTTTATACAGTCATTgcagttttcatatattttgaacattatgtCTGCTTTCATATGCTTTTAATAACAGAAGTCGAGCGGTGCtgttaatgcatttaaagcaaGGGCCCGTTATTATGGTCATGCTTGTACCAAGGATCCTAATTGCATCTTTTTTCGTTCATACAGCATGAGTCGTACTTCCTGCTACTTTTCTCCCCTCTTAGGAACATTTATGTATCTCCGCttaatgtctttaaaagttGAGAACGTTTTATGCTTCCAAATATAAAAGCACAAGTCATAATCTTTCATCACGGGgcatttctatattaaattttttctgTGCGTATACCtacacctccacacacacacacacacacacacacacatattgttcGGGAGCGAGATAGTAGCTGTGGGTATTAAAAGCGATGTCTCAGCAGCCCTGCACGCACCGGCTCTATTCTTATCGCTCTGACGCCACGCACAGCGTCATCACGCCATCGCTCCCTCCTCCGCTACGCTCTCTCCCTGCATCCCTCCCTCCGGCTCTCTCTAGTAACTGTCTCATTCTCACAATCTGCTTCCTCCTCCTCGCGTACCTCGCGCTCGCTCGCTCACACATGCGCGTATGCTcgctcacacacattcatacgcTCTCGTCCTCTCTCCCGCTGCTCCTATTAATAGAAACCTTTGCTCACACAATGCTTCCTCCCTGCCGTAAGGTGACCGAACAGAGGTTGCCCCCAGCAACAGCCCAAGCGCCTCTGGAAAAGGGCTAGAAAAAGCAGGCACGCACGTCCGTCGTCGCTCTCTCAATCACTTCCTCTTCCGTAATTTTCCCGCTTGCATCTTGTACTTGTTACACCGTGATCCCTCAGCGTATTCGCTTCTCTAAAAGCTGCTCTTGACTCGGTTAtccctgtctgcctgcctcgcTCTCTCTCGTCTCTGTAAAGCGAGCCAGaaccattttccaaaaataccAGGGGAAAGCCATTCCCATTCATCTCGCCTGGCGAGCGATTTCCAGAAGTTTGCCATCTTTGCTTAAGGGCGCCTAGTTCGGCTACTTGTTTTTTCAAACCAATCGCTTGAGCCGCATTTGCCACGTGACTAATCGCTCTCGACCCGATTGGTTGATGGCGACGCAAGAATGTCCAAAACCTTAGAAGTTGGCATCAAAAATGTCCATTTCACGCTTATAAGAGCCTTCCGGAAAACATTATCTGTAATGAAATAAAGGGAATATACACACTA
>XM_043216703.1
gtgacaataaagaggaggggcagccgactcgtcacaatatgtattTCTGGCAGTATGGTGTGTGGGTGGAGGTGGTAGTGGATGACAGGCTGCCTGTGAGAGAGGGCCGTCTGCTTTTCAGCTACTCTCGCACCACCAACGAGTTCTGGAGCGCCCTGGTGGAGAAAGCTTATGCCAAGCTGATTGGTTCTTATGGCAGTCTGAAGGGGGGAATCATCTCAGAGGGAATGGAAGATTTTACTGGGGGCATTGCCTACTCCCTCCCCGTGTCTTCTCGGGCCCCTCGCATGCTCTGGAGGGCCGTCACCGCTGCCCTGGCTAGGAACAGCCTGCTCAGCTGCTTCATACATGCTGCAAATGTAAAGGAGATTGGCACTGTGACATCAGAGGGTCTTATCAAAGGTCATGCATATGCCATCACAGATACAGATAAGgtCCAGAAAGCGTCTGAAGAGGTCTTACTGCTGAGGCTGCGTAACCCCTGGGGGTTTGTGGAGTACTGTGGACCCTGGAGTGACAAgtGTAAAGACTGGGACGCTATAGATAACACCCAGAAGGCCAGACTTGAGTTGGTGAAAGTTGAAGATGGAGAATTCTGGATTGGAATAGAAGACTTTTGTCGGCTGTTTAATACCGTGGAAATGTGCAGCGTGAACCCGGATTCGATGTCAGGGGAGGCGAGTGAAGACACAGCCACCGCGTCCTGGACATTAAGCTCACATCAAGGAAACTGGGTCCCAATGTGTTCTGCAGGGGGCAGCCGACGATACCCCAGATCCTTTTGGAAAAACCCTCAGTTCCAGATGGTTCTGTCTGAGAAAGATGTGGATGATCACGATTATGGAGAAGATGAAGAAGGGGAGGAAGGAGATGGAGAAGATGATGAAGTAGGTGTTGTGGTGGCTCCTGTGAGCAAGACTGAGAAacagggagagaaaaagaagaagtgCACAGTACTGGTGGAGCTTCTCCAGAAATACAGGAGACAGAAAGATAAAGTCAACTTTCTCTACATCGCATTTCACATCTACAAGGTTCCCCCTGAGCTGCAGGACAAACCGGGATCTCTGGACCAGCAGTTCTTCTCCAACACCAGTCCAGTTGCCCGCTCTGGAAAGTACCGTAGCATTAGGAGCGTGTGGCGGAAGGTGCACCTAGAACCTGGCAGTTATGTCATCCTAGCCTCCACCTACAGGCCCAACCAGCAGGGGGAGTTCTTCCTCCGCGTTTACACCCAAACCGGCAACATACAGGGGTTCCAGGATTTCCCCTGCACCAACAACTACTCTGTGATGGTAATGTCAAAGCCAGTCTTACCTGAGGATCAGTTTAGAGTGCAGAAGTGGTTTGATGAAAAGGCTGGGTCGGATGACAGAGTGAATGCTGTGCAGTTCATGAACCTGGTGAACTCAGtgttggAAAAAGACTATGAACTTCCACTGGAGACCTGCAGACAGCTCATCTTTGGAGAAGATACTGGTGGCAGAGGCCGTCTGAGCAGAGCTCAAGCAGAGAAGCTGCTCACCTCCCTACGCAATCTGCAGTCTATCTTTTTCCAGTTTGATGAGGATTCGTCAGGAACCATGAGTCCGTTTGAGCTCATTTTGGCTTTGAATGCTGCAgGTGTGGAGTGTGACAATGTTGTGGTGCAGTTGTTGTGGGAGAGGTTCGGCGCTGGTGAACAATACCTGCCTTTCTATGGCTTTGTGTCTTGTGTTGCCAGACTGCAGGTGCTCTTTGATCTTTTCGAGTCGGAGACCAACCCAGAGGTGAAGGACAACGGCATCAACGCTTGGCTGCTCAAGCTGTTGGCTGTGTGAGCCTGTCCAGACCCGACACCTCAGCGGGACGGACCTGCTAGGCCAAGACTACTCTGACGTCATCCACCTGGGCCTACGTCTCCCACATCTCCCCCTCTTCTATCTCATTTGTGATCTTTCGGACCTTTGCCCTGCAGTTGCTTCCACCCACTCATCACTCCATCAGTTTGGGGTCTATGACCATGTAGGTCATTACTGCCTGGATACAAAATTTCATCCCCCTCGCTCCACCCTAACAcagcgtgtgcgtgtgtgtgtgtgtgtgtttgcgttcaTAATAATCccaacatttgaatattttaataggaatatttttcttgtaaatgaTCATTATAGCATCGTTAACTCGCTCTCTCGTCATCCCAAACCcaaatgactttatttcttttgtggAGCGCAAAAGAAGATGTTTTACGGGATGCCCAAGCTGCTCTTTTACCACgtgcaatgaaaatgaatagagACGGTTGTGATGGCCGTTCACTTTGATTGTTGGAGAGGCTTGGGCATTCTTCCAAACATCTTCCTCTGtgttacaaacaaaaaagaaagccGTATGCATTTgtcatgaatgtaaatgtgaccaatctatatttaataacaacTATATTTCTAGCACATTCGTCCATTTAATTAGCAGAGCTGtctattaatgttaatttagcGGGATTTAGTGCCGGAAAATATTGATTCGtgattaatcaaaatatcatGCAGTTAACTAAATGAAATTTTGACTCACTGATTGCTCTAATTATGAGTGACGCTTTATACAGTCATTgcagttttcatatattttgaacattatgtCTGCTTTCATATGCTTTTAATAACAGAAGTCGAGCGGTGCtgttaatgcatttaaagcaaGGGCCCGTTATTATGGTCATGCTTGTACCAAGGATCCTAATTGCATCTTTTTTCGTTCATACAGCATGAGTCGTACTTCCTGCTACTTTTCTCCCCTCTTAGGAACATTTATGTATCTCCGCttaatgtctttaaaagttGAGAACGTTTTATGCTTCCAAATATAAAAGCACAAGTCATAATCTTTCATCACGGGgcatttctatattaaattttttctgTGCGTATACCtacacctccacacacacacacacacacacacacacatattgttcGGGAGCGAGATAGTAGCTGTGGGTATTAAAAGCGATGTCTCAGCAGCCCTGCACGCACCGGCTCTATTCTTATCGCTCTGACGCCACGCACAGCGTCATCACGCCATCGCTCCCTCCTCCGCTACGCTCTCTCCCTGCATCCCTCCCTCCGGCTCTCTCTAGTAACTGTCTCATTCTCACAATCTGCTTCCTCCTCCTCGCGTACCTCGCGCTCGCTCGCTCACACATGCGCGTATGCTcgctcacacacattcatacgcTCTCGTCCTCTCTCCCGCTGCTCCTATTAATAGAAACCTTTGCTCACACAATGCTTCCTCCCTGCCGTAAGGTGACCGAACAGAGGTTGCCCCCAGCAACAGCCCAAGCGCCTCTGGAAAAGGGCTAGAAAAAGCAGGCACGCACGTCCGTCGTCGCTCTCTCAATCACTTCCTCTTCCGTAATTTTCCCGCTTGCATCTTGTACTTGTTACACCGTGATCCCTCAGCGTATTCGCTTCTCTAAAAGCTGCTCTTGACTCGGTTAtccctgtctgcctgcctcgcTCTCTCTCGTCTCTGTAAAGCGAGCCAGaaccattttccaaaaataccAGGGGAAAGCCATTCCCATTCATCTCGCCTGGCGAGCGATTTCCAGAAGTTTGCCATCTTTGCTTAAGGGCGCCTAGTTCGGCTACTTGTTTTTTCAAACCAATCGCTTGAGCCGCATTTGCCACGTGACTAATCGCTCTCGACCCGATTGGTTGATGGCGACGCAAGAATGTCCAAAACCTTAGAAGTTGGCATCAAAAATGTCCATTTCACGCTTATAAGAGCCTTCCGGAAAACATTATCTGTAATGAAATAAAGGGAATATACACACTA

Function

symbol description
capn12 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Acts upstream of or within keratinocyte differentiation. Predicted to be active in cytoplasm. Orthologous to human CAPN12 (calpain 12).

NR:

description
PREDICTED: calpain-9-like isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216702.1 True 4244 mRNA 0.49 21 841411 862016
XM_043216703.1 False 3831 mRNA 0.48 19 848009 862016

Neighbor

gene id symbol gene type direction distance location
znf296 LOC107657474,LOC107554501,LOC107757154,LOC107758245,LOC107662139,LOC107560153 coding upstream 6061 824825 ~ 835350 (+)
siae siae coding upstream 28016 807366 ~ 813395 (+)
bckdha bckdha,LOC107554504,LOC107662140,LOC107560150,LOC107758241,LOC107676752 coding upstream 188876 643777 ~ 652535 (+)
tmem91 tmem91,LOC107757682,LOC107758240,LOC107560149,LOC107662142,LOC107676753 coding upstream 202547 615589 ~ 638864 (+)
ppp1r13l ppp1r13l,LOC107757772,LOC107758239 coding upstream 244997 580746 ~ 596414 (+)
fosb fosb,LOC107757073,LOC107657472,LOC107560154,LOC107758249,LOC107662135,LOC108433461 coding downstream 12671 874687 ~ 880293 (+)
c18h19orf47 si:ch211-160d20.3,LOC107657470,LOC107662134,LOC107758250,LOC107560146 coding downstream 20932 882948 ~ 888956 (+)
ttc9b ttc9b,LOC107756857,LOC107560155,LOC107662133,LOC107758251,LOC107657468 coding downstream 29597 891613 ~ 914612 (+)
sipa1l3 sipa1l3,LOC107687359,LOC107554497,LOC107662132,LOC107758252,LOC107746578,LOC107560140 coding downstream 89882 951898 ~ 1019298 (+)
qpctla qpctla,LOC107758254,LOC107554496,LOC107746558,LOC107687360 coding downstream 161391 1023407 ~ 1028531 (+)
G123312 NA non-coding upstream 311792 529398 ~ 529619 (+)
G123301 ryr1b,LOC107676751,LOC107596888,LOC107758351 non-coding upstream 328779 511298 ~ 512632 (+)
G123282 LOC107676751,LOC107758351 non-coding upstream 365010 464104 ~ 476401 (+)
G123257 NA non-coding upstream 478375 361393 ~ 363036 (+)
G123472 yap1,LOC107758259,LOC107662128,LOC107746561 non-coding downstream 161089 1023105 ~ 1051430 (+)
LOC122323124 NA non-coding downstream 234447 1096463 ~ 1129331 (+)
G123491 NA non-coding downstream 369750 1231766 ~ 1236921 (+)
G123493 NA non-coding downstream 381346 1243362 ~ 1250048 (+)
G123511 NA non-coding downstream 514801 1376817 ~ 1379899 (+)
LOC122362993 LOC107758246,LOC107662138,LOC107657475,LOC107757244 other upstream 17736 814751 ~ 823675 (+)
G123243 NA other upstream 732579 108369 ~ 108832 (+)
tmem123 NA other downstream 183178 1045194 ~ 1054735 (+)
G123568 NA other downstream 703410 1565426 ~ 1571931 (+)
G123664 NA other downstream 1139770 2001786 ~ 2002290 (+)
LOC122363059 LOC107714787,LOC107556260,LOC107691117,LOC107551460,LOC565819,LOC107715220,LOC107690391 other downstream 1345183 2207199 ~ 2240260 (+)
plin1 plin1,LOC107549017,LOC107715593,LOC107577193 other downstream 1439742 2301758 ~ 2319140 (+)

Expression


Co-expression Network