c18h19orf47 (si:ch211-160d20.3,LOC107657470,LOC107662134,LOC107758250,LOC107560146)


Basic Information

Item Value
gene id c18h19orf47
gene name si:ch211-160d20.3,LOC107657470,LOC107662134,LOC107758250,LOC107560146
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 882948 ~ 888956 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216731.1
ACAAGATTTCCGCGACGCGTCGGTTTTTCCCTGGGAAGATGGCGACGGTCACAACAGccaccTCAGAATGGATCCAGTTCTTCAAAGATGCTGGGATCCCTCCTGGACTGGCTGTCAACTACGCAGTGTCGTTTGTTGATAACAGGATTCAGAAAAGCATGCTCATGGACCTCAGTAAGGAAATAATGATGGACTTGGGAATTACAGTCATCGGGGACATCATAGCCATTCTCAAACATGCAAAGCATGTGTATAGACAGGATATGTGCAAAACGACAACCGAGGCCATTTCGTCTGGACAGACTAGTGTACAGGCTGAACTGAGACGTACTGCAAACACTCCTGCCACACGCATGATTGCCAATGCTCTGAGCCGGGACTCCCCACCAAGCACTCCTGCTCGGCGCCCTGACAACCGAATTTCAGTAACGGTCTCCAACGCCAGTGCCAAAACAGTGCCCAGCAAGCCAACAGAAGAAAATGGGTTGCAAGTAAAGCGCCGGCGAGTCACAAGAGAAATGGAGGGCAAATATATCATAAACATGCCAAAAGGCACCACAGCTCGAACTCGGCGCATCCTGGCGCAGCAGGCAAAGAAAGCTAAGGTTTTAAAGCGTACTTCAGTGTTTGACAGACTCGGGGCAGAGTCAAAGGCAGACACCACCTCAGCCAATAAGcAGCCAACAGGTGTGTTTAGCCGACTGGGTGAAGCAGAGGAAGACGAAGACAGCGGAGGAAAGACAGATGGTGTTGCAGACGCTTTCGAGGACAATGACAGCGACGGCGACGGCTCGGTGCTGCAGTATGCCGGCGTCCTCAAACGACCCCCACCCACTTCTAAAAAAGAGACCGTAACAGCCAAAACTAAACCCCTCACTCTGCGTCGACTCGGCGCAAAGTACAAACTCCCCTTATCTGAAGGCACACCGCCGATATCCTCCTCTACCTCCTCCTCCAACCAAGAGGGGACACCCAAACTGGGTGTACTGCAGAGACTGGGCAAGGCCCCGTCGGTCAACCCTACCTCCTCGACCCCTCTAGTCAATCAGCCTGCAGACACCCAGGACAGTCGTGTTACGAGTAGCAGGAGCAAATTCCAGGGCAGCTTTGCTCTGGCCAGCCCTAAGGTCAGTAGCAGCACAGGTGACACTCACGGGGCTCAGATGGACGCTGGCTCGGTCAGTGTATTCAAGAGACTGGGCGCGCGGAAAACCTAATACCTGAAAAACTAAAAGGCACCCCTTTTTTTTATCCAGTATGCCTATTTTATAACTTAAAACCCACCTGAATTTCCGTTTGAGTGAGTGGAGAAACTCTAGGACCACCCTTGATGGATTGGGAAGTCGATATGCTGTACCTCATGGAGTGTTATGAATTGATGATACTAGGGGGAAAAAGGGACAGCTGCAATATCTGTTAAATGTCAGTGTGGACATACCTGTTCTCATTATGTTTGGTTATAGGAATCATGCTCTATACCCCATCCTACTTTTATAGCTGCTCTCCTGCGCCTATGTGagtgaaacattttttccagattAAAGGGGGGGGGGTTtgtaataaagattttataatGCATGGCGCCCAGCATCGAATGCTCGAAATGTCAAgggtattttttgttttccactacCGTAGCCAAGAGACGTAAGTAAAAGCATGTGCTATGTTTACCGCAAACACCTCAGCTTACCGATTCCTTCATGAAGTAAGCTCATGTTCTTACCTCCTagcttttaaagggatagttcacaaaaaaatttttttaattgtcatcatatattcactctcatgtcattttctttcttctgtggaattgTTTTTAGTCAGAATCTTCAGATTCTAATTTTTGTTCCGCAGAAGAAGAAAACCCGTATAGCTTTGGACAAGAGGAGGAGTAAATGGTTActctttcatttttggttgaatcATCCCATTCACTTCACAggatttttataatacaaaaaagccTTTTGTTGGCTTTAAACTGCACGCATGAGCATTTCCATTAATGCGCCTTAACCTGCGGTCACACTAgacttttagaaataaaaattacatttaacaaatacATTCAGAATTAGAGAAACGTACATTTTACTCCATTTTCCTGCAAATCTGCAGCTTTAAGGTTTATTGGTGACCTATAGGAATTCGTAGTTCACCAAAATTGGACTTTGAAATGCCCAACAATGCCATTGTTTTATGCGAGCTTGCATATTTCCTGTATACAAGTGAAATTGAAAAGTGTTGCGTGACCGCAACTGTAACCTTTCTCAAAGACACAAAATCACAATCACAGTCTGTGTTAAAGAGTCTCTGCTCTCGAATCTCCGCATTCAAAATGCCATCCAATGAAAATTTGTGTTGTTAAGTGTTACTTGGACAAGCAGAGCAAATATAGTACTGGTGATAGCATGCTGTTGCCAAGCAACACACGTGGAGGTGGACCCTTGTGTATTTGTACGAGTTTTCACCCCTTTGTACTGTTCACTACAGTAACCACTAATCATGCCGTTGTAATAGGAATTCACCTACGCTTTGTGTTCCGTCATGTTtccttcatgttttttttttttaattataaatatcataattttaaGCATCTCAAATGCAgaattttgttacattattatgtttaggaatattaagaataaaacattttaactgggtaagtttataaaatattgatgAAGATTATTTGTCTTGGAAATGGattgaatataaaaagataaaacaaaaa

Function

symbol description
si:ch211-160d20.3 Predicted to be active in nucleus. Orthologous to human C19orf47 (chromosome 19 open reading frame 47).

NR:

description
PREDICTED: uncharacterized protein C19orf47 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216731.1 True 2743 mRNA 0.44 8 882948 888956

Neighbor

gene id symbol gene type direction distance location
fosb fosb,LOC107757073,LOC107657472,LOC107560154,LOC107758249,LOC107662135,LOC108433461 coding upstream 2655 874687 ~ 880293 (+)
capn12 capn12,LOC107657473,LOC107757007,LOC107554500,LOC107560139,LOC107758230 coding upstream 20932 841411 ~ 862016 (+)
znf296 LOC107657474,LOC107554501,LOC107757154,LOC107758245,LOC107662139,LOC107560153 coding upstream 47598 824825 ~ 835350 (+)
siae siae coding upstream 69553 807366 ~ 813395 (+)
bckdha bckdha,LOC107554504,LOC107662140,LOC107560150,LOC107758241,LOC107676752 coding upstream 230413 643777 ~ 652535 (+)
ttc9b ttc9b,LOC107756857,LOC107560155,LOC107662133,LOC107758251,LOC107657468 coding downstream 2657 891613 ~ 914612 (+)
sipa1l3 sipa1l3,LOC107687359,LOC107554497,LOC107662132,LOC107758252,LOC107746578,LOC107560140 coding downstream 62942 951898 ~ 1019298 (+)
qpctla qpctla,LOC107758254,LOC107554496,LOC107746558,LOC107687360 coding downstream 134451 1023407 ~ 1028531 (+)
tbcb tbcb,LOC107687357,LOC107662130,LOC107758256 coding downstream 151180 1040136 ~ 1045127 (+)
nucb2b nucb2b,LOC107746563,LOC107656849,LOC107657662,LOC107554560,LOC107739429 coding downstream 480537 1369493 ~ 1376040 (+)
G123312 NA non-coding upstream 353329 529398 ~ 529619 (+)
G123301 ryr1b,LOC107676751,LOC107596888,LOC107758351 non-coding upstream 370316 511298 ~ 512632 (+)
G123282 LOC107676751,LOC107758351 non-coding upstream 406547 464104 ~ 476401 (+)
G123257 NA non-coding upstream 519912 361393 ~ 363036 (+)
G123472 yap1,LOC107758259,LOC107662128,LOC107746561 non-coding downstream 134149 1023105 ~ 1051430 (+)
LOC122323124 NA non-coding downstream 207507 1096463 ~ 1129331 (+)
G123491 NA non-coding downstream 342810 1231766 ~ 1236921 (+)
G123493 NA non-coding downstream 354406 1243362 ~ 1250048 (+)
G123511 NA non-coding downstream 487861 1376817 ~ 1379899 (+)
LOC122362993 LOC107758246,LOC107662138,LOC107657475,LOC107757244 other upstream 59273 814751 ~ 823675 (+)
G123243 NA other upstream 774116 108369 ~ 108832 (+)
tmem123 NA other downstream 156238 1045194 ~ 1054735 (+)
G123568 NA other downstream 676470 1565426 ~ 1571931 (+)
G123664 NA other downstream 1112830 2001786 ~ 2002290 (+)
LOC122363059 LOC107714787,LOC107556260,LOC107691117,LOC107551460,LOC565819,LOC107715220,LOC107690391 other downstream 1318243 2207199 ~ 2240260 (+)
plin1 plin1,LOC107549017,LOC107715593,LOC107577193 other downstream 1412802 2301758 ~ 2319140 (+)

Expression


Co-expression Network