yif1b (yif1b,LOC107566288,LOC107564401)


Basic Information

Item Value
gene id yif1b
gene name yif1b,LOC107566288,LOC107564401
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 15066862 ~ 15072223 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216733.1
AGTGATGTCTGTCACACGATCGCTGTTCCTCTCTAATTTTCCTGCTATTTCTGCGGTGCTAATTTTAGTTTCACTACCGGCAGCTTCTCGGTCAGTCGTCTAAATGCGCTGATAAAAATTCATATATGTTTTTCGTAACCTCGTTATTCAGATAAAGACGCATTTCCAGGAGAGATGGAGTATCCAAACCAGAGTGGGTTCAGACAGCGTAAGTTACAGCCGAACGTCAGGATGCGAGGGGCCCCGGCGGACCCCAGCGACCCCGGCGTGCTGTTTGACGACACCAGCTCCGGAGGGAACAAACGCGAGCAGAGCGGTGCAGGAAAAGCCCCCGACGCGTACCCGGGACAGGCTTTGCTCTCGGAGCCCATGTCTAACCTCGCCATGGCCTACGGCAGCAGCCTGGCCTCCCACGGCAAAGAGATGATGGACAAGAACCTGGACCGGTTCATCCCCATCTCTAAGCTGAAGTATTATTTTGCGGTGGACACGGTGTATGTGGGCAAGAAGCTCGGCCTGCTGGTGTTTCCCTACATGCACGACAACTGGGAGGTGAGCTACCAGCAGGACACTCCGGTCGCCCCGAGGTTCGACATCAACGCCCCTGACCTGTACATTCCCGTGATGGGGTTCATTACCTATATTCTGGTAGCGGGACTGGCTCTGGGCACACAGAACCGGTTTTCTCCGGAGATCCTGGGCATTCAGGCCAGCTCGGCGCTGGTGTGGCTTATCATTGAGGTTCTGGCTGTTCTTCTCAGTCTTTATTTGATCACGGTTAACACCGACCTCACCACCATCGACCTGGTGGCCTTCTCTGGATACAAATATGTTGGGATGATTGTGGGCGTGATAGCAGGACTTCTGTTTGGCCGGATGGGATATTACCTCTCGCTGCTCTGGTGCTGCGtctctatttttgtttttacgATTAGGACACTGCGGTTAAAGATCCTGTCTGAAGCGGCCGCGGAGGGTCGGTTAGTGCGAGGAGCCAAAAACCAGCTGCGGATGTACCTGACGATGGCCATCGCTGCGGCGCAGCCTGTCTTCATGTACTGGCTGACCTTCCATCTGGTCAGATAAGAGCCGCGGGTGTCTGGAGGATCAGCCATATCGTTCGTCCCGCAGCAGTCACAAACGTCTTTTTGCACACGTTTAATAAACCAATGGACACGCGTCGTGCATCTTCACAGCACAATACGAACGATCTGAACTGCAATTGCCCAGCAGTCTTTTGTATGTTTTGGTTTGGACATTTCTAAGAGTCTctgttggtttttgttttgtataatgtacagcgtaattgtattttttttaatgtaaaactgtgtttgtttgcaaacaAAAGGTCGTAGATACCGTGGCTTGAGAAACATGAACGTGACTGTTTGGTGGCCGAAAGACCGATGAA
>XM_043216734.1
GTGATGTCTGTCACACGATCGCTGTTCCTCTCTAATTTTCCTGCTATTTCTGCGGTGCTAATTTTAGTTTCACTACCGGCAGCTTCTCGGTCAGTCGTCTAAATGCGCTGATAAAAATTCATATATGTTTTTCGTAACCTCGTTATTCAGATAAAGACGCATTTCCAGGAGAGATGGAGTATCCAAACCAGAGTGGGTTCAGACAGCAGCCGAACGTCAGGATGCGAGGGGCCCCGGCGGACCCCAGCGACCCCGGCGTGCTGTTTGACGACACCAGCTCCGGAGGGAACAAACGCGAGCAGAGCGGTGCAGGAAAAGCCCCCGACGCGTACCCGGGACAGGCTTTGCTCTCGGAGCCCATGTCTAACCTCGCCATGGCCTACGGCAGCAGCCTGGCCTCCCACGGCAAAGAGATGATGGACAAGAACCTGGACCGGTTCATCCCCATCTCTAAGCTGAAGTATTATTTTGCGGTGGACACGGTGTATGTGGGCAAGAAGCTCGGCCTGCTGGTGTTTCCCTACATGCACGACAACTGGGAGGTGAGCTACCAGCAGGACACTCCGGTCGCCCCGAGGTTCGACATCAACGCCCCTGACCTGTACATTCCCGTGATGGGGTTCATTACCTATATTCTGGTAGCGGGACTGGCTCTGGGCACACAGAACCGGTTTTCTCCGGAGATCCTGGGCATTCAGGCCAGCTCGGCGCTGGTGTGGCTTATCATTGAGGTTCTGGCTGTTCTTCTCAGTCTTTATTTGATCACGGTTAACACCGACCTCACCACCATCGACCTGGTGGCCTTCTCTGGATACAAATATGTTGGGATGATTGTGGGCGTGATAGCAGGACTTCTGTTTGGCCGGATGGGATATTACCTCTCGCTGCTCTGGTGCTGCGtctctatttttgtttttacgATTAGGACACTGCGGTTAAAGATCCTGTCTGAAGCGGCCGCGGAGGGTCGGTTAGTGCGAGGAGCCAAAAACCAGCTGCGGATGTACCTGACGATGGCCATCGCTGCGGCGCAGCCTGTCTTCATGTACTGGCTGACCTTCCATCTGGTCAGATAAGAGCCGCGGGTGTCTGGAGGATCAGCCATATCGTTCGTCCCGCAGCAGTCACAAACGTCTTTTTGCACACGTTTAATAAACCAATGGACACGCGTCGTGCATCTTCACAGCACAATACGAACGATCTGAACTGCAATTGCCCAGCAGTCTTTTGTATGTTTTGGTTTGGACATTTCTAAGAGTCTctgttggtttttgttttgtataatgtacagcgtaattgtattttttttaatgtaaaactgtgtttgtttgcaaacaAAAGGTCGTAGATACCGTGGCTTGAGAAACATGAACGTGACTGTTTGGTGGCCGAAAGACCGATGAA

Function

symbol description
yif1b Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be active in COPII-coated ER to Golgi transport vesicle; endoplasmic reticulum membrane; and endoplasmic reticulum-Golgi intermediate compartment. Predicted to be integral component of Golgi membrane. Orthologous to human YIF1B (Yip1 interacting factor homolog B, membrane trafficking protein).

NR:

description
PREDICTED: protein YIF1B isoform X1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20362 YIF1; protein transport protein YIF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216733.1 True 1414 mRNA 0.51 8 15066862 15072223
XM_043216734.1 False 1404 mRNA 0.52 8 15066863 15072223

Neighbor

gene id symbol gene type direction distance location
si:ch211-136a13.1 LOC107727474,LOC107566284,LOC107692514,LOC107722278,LOC108264834,LOC108435511,LOC106580732 coding upstream 2024 15052044 ~ 15064838 (+)
shkbp1 shkbp1,LOC107692479,LOC107724139,LOC107656962 coding upstream 145839 14911044 ~ 14921023 (+)
ppp1r37 ppp1r37,LOC107692481,LOC107566290,LOC107709550 coding upstream 165455 14871768 ~ 14901407 (+)
bmp16 LOC107566293,LOC107692530,LOC107709563,LOC107577119,LOC107725066 coding upstream 216486 14843211 ~ 14850376 (+)
kcnj5 kcnj5,LOC107725067,LOC107558569,LOC107709561 coding upstream 291469 14752182 ~ 14775393 (+)
dusp8b LOC107713871,LOC107692476,LOC107569904,LOC107599770 coding downstream 360733 15432956 ~ 15442131 (+)
mob2b mob2,mob2b,LOC107722284,LOC107656971,LOC108430083,LOC108264656 coding downstream 377118 15449341 ~ 15482697 (+)
scamp5b scamp5b,LOC107740350,LOC107722282,LOC107599784,LOC108430449 coding downstream 439312 15511535 ~ 15518917 (+)
insyn1 LOC107692472,LOC107740352,LOC107656969,LOC107722291,LOC107581104 coding downstream 541180 15613403 ~ 15670157 (+)
ubl7b LOC107668695,LOC107579017 coding downstream 738448 15810671 ~ 15814853 (+)
G126458 NA non-coding upstream 285 15066346 ~ 15066577 (+)
G126347 NA non-coding upstream 82114 14932321 ~ 14984748 (+)
G126345 ltbp4,LOC107724163,LOC107566282,LOC107692515 non-coding upstream 129228 14936925 ~ 14937634 (+)
LOC122323060 NA non-coding upstream 323418 14740786 ~ 14743444 (+)
G126285 NA non-coding upstream 595847 14470760 ~ 14471015 (+)
G126591 NA non-coding downstream 688740 15760963 ~ 15820330 (+)
G126605 NA non-coding downstream 753204 15825427 ~ 15828353 (+)
G126626 NA non-coding downstream 927229 15999452 ~ 16003818 (+)
LOC122362955 NA non-coding downstream 986311 16058534 ~ 16058974 (+)
G126711 pimr50,si:dkey-1p9.2,pimr51,LOC107716905,LOC107600734 non-coding downstream 1136361 16208584 ~ 16211583 (+)
LOC122362588 NA other upstream 18969 15035383 ~ 15047893 (+)
LOC122322993 LOC107709552 other upstream 156705 14906616 ~ 14910157 (+)
gemin7 NA other upstream 238570 14826788 ~ 14828292 (+)
G126146 gramd1bb other upstream 1125493 13940095 ~ 13941369 (+)
G126175 NA other upstream 1154062 13909564 ~ 13912800 (+)
LOC122362954 LOC107740354 other downstream 878759 15950982 ~ 15953653 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other downstream 974846 16047069 ~ 16055627 (+)
LOC122362750 homer2,homer3,LOC107595365,LOC107569981,LOC107703939,LOC107726331,LOC107723860,LOC107692231,LOC107572947,LOC107753825 other downstream 1191616 16263839 ~ 16271267 (+)
G126820 NA other downstream 1681486 16753709 ~ 16818399 (+)
G126884 ctxn2 other downstream 2001971 17074194 ~ 17077159 (+)

Expression


Co-expression Network