slc12a3 (slc12a3,LOC107740340,LOC107583876)


Basic Information

Item Value
gene id slc12a3
gene name slc12a3,LOC107740340,LOC107583876
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 25371705 ~ 25381143 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216766.1
taaattttttaagaTTCTTACATGagtagaaagttcaaaagaatagcttttatttacaatataattactttttgcCACAATGGAATTtgttactgtcacttttgctcAATTTAGTGCTTCCTTGCTGGATAATAAGTATGTATTTCTTCTGAAAAGATTAATTAAATCCATCTTTTGATGTTGTTACAATGATTTTATGTAATATGAAAAATTGGCTGTTTCCAACAGTGGACTCATTGTAATTTCAATTGAAACCACTTTATACAGTCTTCTACTTCTTGTTCTGACAGCTCCCCTCAGGCAGCATGAGGATTTCTAAATGACCATTTAGTAGCTGGTTTTCTGCTTAAGCTCTTGGTGTCTAATAATagaaatttaatcaaaaaatctGCTTCAAAGCAGAGCACCTGTGGGTACGTTTGTAGGATCTGCACTAATTACACCGAAAAGGCTCCACCTTTGGGGCTTCCAGACCAATTTCTGCAGAAATAATTACTTAACCCGATGCTGCTCCCTGGGTCACATGCATTGGCAGACATCGGCCTTTTAGTTAATGAGGAACAGTTTCTGCAATGATCAGTCAACGCTTAAGGCAAAGGGCTGTCTTCTGGAACGACTGTGTGCTGCTGGCAGGTTAAAGTGGCTAAAATGAAGGTCACTACGGGTTGGAAAATTCTCTGATCAAGAAAAATACACTGTCTCAGTCGATATCGTTGCTTGGCtacacttattttaaagtgccttGCTGCACTGTAATTATACATGTAAGCACTGAGtgacattaattaacatgaagtTACTATAGGGTTAGTTGCATGTTGcctaattatgcataatttactgttattattaaagtaagTACATGTGACAAAAACACTAGAAGAAAGTCAGAAAGTTTTCCCGATATTGTCATCTGTCCTGATTgctatcagaaaaaaaacaacactaccAAAATGTCAGaggtgaaaaacaaacaagactaaataaaaaaaaaaaaaaagtatggttTACTATGCATGTCTCAGGACTCTGAAAACCTGCAGTTGTCCTTGAGAACAAGTGTCAAGGATATCTGACCTGAGATCTGAGTCATTACATGTATAGATGATGTTTACAAGCCTCAGTACAAGCAAAAGGCCCTGCAGCAACAATTCGGAATTAATGACCGTTACAAAAGCTCCTGAATATGTTCTCACAATAATCATGCATCCATAAGTGGTTCCTTCCGGCCCAGGTACAATATAACCCTTCAAATCAAGCCCTCGCTTTACTCAGAGGGCTGTTGATTCAGTTGTGTTGGAGGGATGAACCTCACAACCGCCAGAAGCCCTTTCTCAGTCTCTTCAATGAGCAATGGAGATGACCGTAAATTCAGTTTGGGGGGATGTAGCAATTCCGATACTGACAGCGTAGCCTCCCGCAGCTCTGGAGTCTTTTCTGGATATGACACTTTGGATACTCCGCCGAGCTATGACTTCTATACCAACACTGAGGTCTTTGGGAGAGCAAAAAAGTCAAGACCTTCTCTCTTTCAGCTTCACTCCAACCCACAGGTGTTCTCTCAGGACGACCCTTCTCCACCTCCTCTCTATGAGGAGTCGAGTGTGGACAAACAGAGTCCGGATGAAGATGAACCAACAGAACCTCCTCCAGAACCGACCCGCTTTGGATGGGCTCAGGGAGTCatgATCCGCTGTATGCTGAATATCTGGGGTGTTATTTTGTACCTGAGGCTTCCCTGGATCACAGCTCAGGCAGGGATTGGAATGACCTGGATTATAATCTTGGTCTCCTCTTCTATTACTGGCATCACAGGCTTGTCCACATCAGCCATTGCCACTAATGGAAAGGTTAAAGGAGGTGGAACATATTTTCTGATCTCTCGTAGTTTGGGTCCAGAACTAGGAGGCTCGATTGGGCTTATATTTGCTTTTGCTAATGCGGTAGCTGTAGCTATGCACACTGTGGGTTTTGCTGAAACGGTACAGGTGCTCATGCAGGAGACTGAGGTTAGCATGGTAGACAAACTAAATGATATCCGTATCATTGGAGTGATTACTGTCACCTGTCTGCTGGCCATCTCAATGGCTGGAATGGAATGGGAGTCCAAGGCCCAGGTCTTGTTCTTCTTGGTCATCATGGTCTCCTTTGCCAGTTACATTGTGGGAACCATCATACCAGCCACTCCACAGAAGCAAGCCAAAGGATTTTTCAGCTACAGAGCTGATATTTTTGCGGCAAACTTTGTGCCCGGCTGGCGCGGACCGGAGGGGAGTTTCTTTGGCATGTTTTCCATCTTCTTCCCCTCGGCTACAGGCATCCTTGCGGGGGCTAATATCTCTGGAGATCTGAAGGATCCAAATGTTGCTATACCCCGTGGTACAATGTTGGCCATTTTTTGGACCACTATATCATATCTTATTATCTCAGCTACTATTGGCTCCTGTGTTTTGCGTGATGCTTCTGGTTATATAAATGATACCGTCTCGTCTTTGTCTGGGGAGTGTTTGGGAGTGGGCTGCAACTATGGCTGGAACTTCACAGAGTGTATAACCAACAAGACCTGCCCCTATGGACTCAGCAATTATTACCAGAGTATGAGCATGGTGTCAGCGTGTGGTCCTCTGATTACTGCTGGCATTTTTGGAGCAACTCTTTCCTCAGCCCTGGCCTGTTTGGTATCTGCTCCTAAAGTTTTCCAGTGCCTTTGCAAGGACAAGCTGTATCCAGGCATTGGGTTTTTCGGGAAGGGTTATGGGAAGAATAATGAACCACTGAGAAGCTATCTGCTAGCCTATGTCATCGCTATATGCTTCATTCTAATTGctGAGTTGAACACCATTGCTCCCATCAtctccaattttttcctctgcTCCTACGCCCTCATTAACTTCAGCTGCTTCCATGCCTCCATCACCAACTCACCAGGCTGGCGTCCAACTTTTCGATTTTATAGCAAGTGGTTGTCTTTGCTCGGAGCAGTAGTGTCTGTGATCATCATGTTTCTCCTAACCTGGTGGGCTGCTCTTATAGCCATCGGCATAGTCATCTTCCTGCTGGGATATGTGCTCTATAAGAAACCCGATGTCAACTGGGGTTCATCAATGCAAGCCAGCTCATATAACATGGCACTGTCTCAGTGTGTAGGTCTTAACCAAGTGGAAGACCATATTAAAAATTACAGGCCACAGTGTTTAGTCCTCAGTGGGCCTCCCTGTATGCGTCCTTCTCTAGTGGATTTCATCGGCACCTTCACCAAGAACCAAAGCCTAATGATATGCACAAATGTCATAACAGGTGGACCCTCACCTGACGCTGTGGAGTCGGCCAAAATCAGtactcatttaaaatggcttGACAAACGGCGCATAAAGTCCTTCTACCACACTGTAGTAGCTGATGACCTTCGTGTCGGCGTACAGATGTTGCTGCAGAGTACGGGTTTGGGTCGGATGAAGCCTAATGTCCTAGTCATGGGATTTAAGAAGAATTGGCGTAAAGCTCAACCAGGCGTCATTGAAAACTATATTGGAATTCTGCAcGATGCATTCGATCTGCAATATGGTCTATGTGTTCTTCGGATGAAGGAGGGTCTTGACATAAGTCGAACAATGCAAGCACATGTGAATTTAGGGTTTGAGACTTCTACCGAACAAGCACTTGACACAAGGACCTCAACTACTACTACATCACCCACAATTGACACATCACTGGACCCCGAGGAACTAATGGCCATATCCCAGCCAACCACTGTATTTCAGACTAGACAAGGAAAGAAGACCATTGATGTGTATTGGCTATCTGATGATGGAGGTCTGACGCTATTATTGCCTTACCTCCTGACCCGTAAAAAGCGCTGGGGCAGATGCAAAGTGAGGGTGTTTGTTGGAGGTGAAGCTCAACAGGTTGATGAGCAGAAACAAGAGCTCAAAGCTCTGATCAGCAGGTTCCGTCTGGGTTTCCAAGATATTCAAGTCCTTCCGGACATCAATGGAAAACCACAGTCTGAGCAcattaaaagaTTCGAAGACCTCATAGCTCCATACAGAGTAAGTTCAGTCCAAAAGGATGGTCAAGAAGCTGATGAGACCACAAAGGATTTCTCCTGGATGGTGTCTGATGAGGAGATTGAAACGTTCAGAGCTAAGTCCCTCCGACAAATACGCCTGAATGAAGTTATTCAAGATTACTCAAGAGATGCCGCACTGATCATTGTAACGATGCCTGTGGGGCGAAGAGGGGCATGTCCCAGTTCGCTTTACATGGCTTGGCTAGAGATTGTGTCACGTGACCTCCGACCTCCAGTTCTTCTTGTCCGAGGCAATCAGGAGAATGTGCTGACGATGTACTGCCAGTGAACACCACCTTTTACTGACATAACTGTTCACACACGCACTTCAGATGAAAAGAAACTCTTGTTAATGATATGTTCAAATTATGACagatttacattcatatttacattcatatcaATTTACTTTCATATTGTGTTTCATACTTGTTTTGATGTTAATAgggtgtttgttttaaatggtttaacctcagtatatattcaaaaacatacatttgtgCTGATTTAGATATTATGTACTTTCTCCAGAAGTAATGAACAAGTAATTCAAACAATTTCCTTTCAAAACTACAAATTAAGTAACAAGAATCTGTTTATCCTGATCTTAATTTAGTGATTGAACAATTTGCatatgtatagttttttttctttttaatggaaactctaatattactgaatatatttaataaattactacTTATGTATTAA
>XM_043216767.1
taaattttttaagaTTCTTACATGagtagaaagttcaaaagaatagcttttatttacaatataattactttttgcCACAATGGAATTtgttactgtcacttttgctcAATTTAGTGCTTCCTTGCTGGATAATAAGTATGTATTTCTTCTGAAAAGATTAATTAAATCCATCTTTTGATGTTGTTACAATGATTTTATGTAATATGAAAAATTGGCTGTTTCCAACAGTGGACTCATTGTAATTTCAATTGAAACCACTTTATACAGTCTTCTACTTCTTGTTCTGACAGCTCCCCTCAGGCAGCATGAGGATTTCTAAATGACCATTTAGTAGCTGGTTTTCTGCTTAAGCTCTTGGTGTCTAATAATagaaatttaatcaaaaaatctGCTTCAAAGCAGAGCACCTGTGGGTACGTTTGTAGGATCTGCACTAATTACACCGAAAAGGCTCCACCTTTGGGGCTTCCAGACCAATTTCTGCAGAAATAATTACTTAACCCGATGCTGCTCCCTGGGTCACATGCATTGGCAGACATCGGCCTTTTAGTTAATGAGGAACAGTTTCTGCAATGATCAGTCAACGCTTAAGGCAAAGGGCTGTCTTCTGGAACGACTGTGTGCTGCTGGCAGGTTAAAGTGGCTAAAATGAAGGTCACTACGGGTTGGAAAATTCTCTGATCAAGAAAAATACACTGTCTCAGTCGATATCGTTGCTTGGCtacacttattttaaagtgccttGCTGCACTGTAATTATACATGTAAGCACTGAGtgacattaattaacatgaagtTACTATAGGGTTAGTTGCATGTTGcctaattatgcataatttactgttattattaaagtaagTACATGTGACAAAAACACTAGAAGAAAGTCAGAAAGTTTTCCCGATATTGTCATCTGTCCTGATTgctatcagaaaaaaaacaacactaccAAAATGTCAGaggtgaaaaacaaacaagactaaataaaaaaaaaaaaaaagtatggttTACTATGCATGTCTCAGGACTCTGAAAACCTGCAGTTGTCCTTGAGAACAAGTGTCAAGGATATCTGACCTGAGATCTGAGTCATTACATGTATAGATGATGTTTACAAGCCTCAGTACAAGCAAAAGGCCCTGCAGCAACAATTCGGAATTAATGACCGTTACAAAAGCTCCTGAATATGTTCTCACAATAATCATGCATCCATAAGTGGTTCCTTCCGGCCCAGGTACAATATAACCCTTCAAATCAAGCCCTCGCTTTACTCAGAGGGCTGTTGATTCAGTTGTGTTGGAGGGATGAACCTCACAACCGCCAGAAGCCCTTTCTCAGTCTCTTCAATGAGCAATGGAGATGACCGTAAATTCAGTTTGGGGGGATGTAGCAATTCCGATACTGACAGCGTAGCCTCCCGCAGCTCTGGAGTCTTTTCTGGATATGACACTTTGGATACTCCGCCGAGCTATGACTTCTATACCAACACTGAGGTCTTTGGGAGAGCAAAAAAGTCAAGACCTTCTCTCTTTCAGCTTCACTCCAACCCACAGGACGACCCTTCTCCACCTCCTCTCTATGAGGAGTCGAGTGTGGACAAACAGAGTCCGGATGAAGATGAACCAACAGAACCTCCTCCAGAACCGACCCGCTTTGGATGGGCTCAGGGAGTCatgATCCGCTGTATGCTGAATATCTGGGGTGTTATTTTGTACCTGAGGCTTCCCTGGATCACAGCTCAGGCAGGGATTGGAATGACCTGGATTATAATCTTGGTCTCCTCTTCTATTACTGGCATCACAGGCTTGTCCACATCAGCCATTGCCACTAATGGAAAGGTTAAAGGAGGTGGAACATATTTTCTGATCTCTCGTAGTTTGGGTCCAGAACTAGGAGGCTCGATTGGGCTTATATTTGCTTTTGCTAATGCGGTAGCTGTAGCTATGCACACTGTGGGTTTTGCTGAAACGGTACAGGTGCTCATGCAGGAGACTGAGGTTAGCATGGTAGACAAACTAAATGATATCCGTATCATTGGAGTGATTACTGTCACCTGTCTGCTGGCCATCTCAATGGCTGGAATGGAATGGGAGTCCAAGGCCCAGGTCTTGTTCTTCTTGGTCATCATGGTCTCCTTTGCCAGTTACATTGTGGGAACCATCATACCAGCCACTCCACAGAAGCAAGCCAAAGGATTTTTCAGCTACAGAGCTGATATTTTTGCGGCAAACTTTGTGCCCGGCTGGCGCGGACCGGAGGGGAGTTTCTTTGGCATGTTTTCCATCTTCTTCCCCTCGGCTACAGGCATCCTTGCGGGGGCTAATATCTCTGGAGATCTGAAGGATCCAAATGTTGCTATACCCCGTGGTACAATGTTGGCCATTTTTTGGACCACTATATCATATCTTATTATCTCAGCTACTATTGGCTCCTGTGTTTTGCGTGATGCTTCTGGTTATATAAATGATACCGTCTCGTCTTTGTCTGGGGAGTGTTTGGGAGTGGGCTGCAACTATGGCTGGAACTTCACAGAGTGTATAACCAACAAGACCTGCCCCTATGGACTCAGCAATTATTACCAGAGTATGAGCATGGTGTCAGCGTGTGGTCCTCTGATTACTGCTGGCATTTTTGGAGCAACTCTTTCCTCAGCCCTGGCCTGTTTGGTATCTGCTCCTAAAGTTTTCCAGTGCCTTTGCAAGGACAAGCTGTATCCAGGCATTGGGTTTTTCGGGAAGGGTTATGGGAAGAATAATGAACCACTGAGAAGCTATCTGCTAGCCTATGTCATCGCTATATGCTTCATTCTAATTGctGAGTTGAACACCATTGCTCCCATCAtctccaattttttcctctgcTCCTACGCCCTCATTAACTTCAGCTGCTTCCATGCCTCCATCACCAACTCACCAGGCTGGCGTCCAACTTTTCGATTTTATAGCAAGTGGTTGTCTTTGCTCGGAGCAGTAGTGTCTGTGATCATCATGTTTCTCCTAACCTGGTGGGCTGCTCTTATAGCCATCGGCATAGTCATCTTCCTGCTGGGATATGTGCTCTATAAGAAACCCGATGTCAACTGGGGTTCATCAATGCAAGCCAGCTCATATAACATGGCACTGTCTCAGTGTGTAGGTCTTAACCAAGTGGAAGACCATATTAAAAATTACAGGCCACAGTGTTTAGTCCTCAGTGGGCCTCCCTGTATGCGTCCTTCTCTAGTGGATTTCATCGGCACCTTCACCAAGAACCAAAGCCTAATGATATGCACAAATGTCATAACAGGTGGACCCTCACCTGACGCTGTGGAGTCGGCCAAAATCAGtactcatttaaaatggcttGACAAACGGCGCATAAAGTCCTTCTACCACACTGTAGTAGCTGATGACCTTCGTGTCGGCGTACAGATGTTGCTGCAGAGTACGGGTTTGGGTCGGATGAAGCCTAATGTCCTAGTCATGGGATTTAAGAAGAATTGGCGTAAAGCTCAACCAGGCGTCATTGAAAACTATATTGGAATTCTGCAcGATGCATTCGATCTGCAATATGGTCTATGTGTTCTTCGGATGAAGGAGGGTCTTGACATAAGTCGAACAATGCAAGCACATGTGAATTTAGGGTTTGAGACTTCTACCGAACAAGCACTTGACACAAGGACCTCAACTACTACTACATCACCCACAATTGACACATCACTGGACCCCGAGGAACTAATGGCCATATCCCAGCCAACCACTGTATTTCAGACTAGACAAGGAAAGAAGACCATTGATGTGTATTGGCTATCTGATGATGGAGGTCTGACGCTATTATTGCCTTACCTCCTGACCCGTAAAAAGCGCTGGGGCAGATGCAAAGTGAGGGTGTTTGTTGGAGGTGAAGCTCAACAGGTTGATGAGCAGAAACAAGAGCTCAAAGCTCTGATCAGCAGGTTCCGTCTGGGTTTCCAAGATATTCAAGTCCTTCCGGACATCAATGGAAAACCACAGTCTGAGCAcattaaaagaTTCGAAGACCTCATAGCTCCATACAGAGTAAGTTCAGTCCAAAAGGATGGTCAAGAAGCTGATGAGACCACAAAGGATTTCTCCTGGATGGTGTCTGATGAGGAGATTGAAACGTTCAGAGCTAAGTCCCTCCGACAAATACGCCTGAATGAAGTTATTCAAGATTACTCAAGAGATGCCGCACTGATCATTGTAACGATGCCTGTGGGGCGAAGAGGGGCATGTCCCAGTTCGCTTTACATGGCTTGGCTAGAGATTGTGTCACGTGACCTCCGACCTCCAGTTCTTCTTGTCCGAGGCAATCAGGAGAATGTGCTGACGATGTACTGCCAGTGAACACCACCTTTTACTGACATAACTGTTCACACACGCACTTCAGATGAAAAGAAACTCTTGTTAATGATATGTTCAAATTATGACagatttacattcatatttacattcatatcaATTTACTTTCATATTGTGTTTCATACTTGTTTTGATGTTAATAgggtgtttgttttaaatggtttaacctcagtatatattcaaaaacatacatttgtgCTGATTTAGATATTATGTACTTTCTCCAGAAGTAATGAACAAGTAATTCAAACAATTTCCTTTCAAAACTACAAATTAAGTAACAAGAATCTGTTTATCCTGATCTTAATTTAGTGATTGAACAATTTGCatatgtatagttttttttctttttaatggaaactctaatattactgaatatatttaataaattactacTTATGTATTAA

Function

symbol description
slc12a3 Predicted to enable sodium:potassium:chloride symporter activity. Acts upstream of or within cloaca development and pronephric duct morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in apical plasma membrane. Is expressed in several structures, including blood; intermediate mesoderm; opercular flap; pleuroperitoneal region; and scale. Human ortholog(s) of this gene implicated in Gitelman syndrome and essential hypertension. Orthologous to human SLC12A3 (solute carrier family 12 member 3).

NR:

description
solute carrier family 12 member 3

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015377 cation molecular_function

KEGG:

id description
K14426 SLC12A3, TSC; solute carrier family 12 (sodium/chloride transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216766.1 True 4780 mRNA 0.43 26 25371705 25381143
XM_043216767.1 False 4768 mRNA 0.43 26 25371705 25381143

Neighbor

gene id symbol gene type direction distance location
nup93 nup93,LOC107549634,LOC107740311,LOC107583877 coding upstream 238 25349481 ~ 25371467 (+)
phaf1 si:dkey-102f14.5,LOC107686270,LOC107738752,LOC107583793,LOC107549632,LOC107740317,LOC107672279 coding upstream 37700 25322656 ~ 25334005 (+)
LOC122362888 LOC107686267,LOC107738755,LOC107738765 coding upstream 77090 25290002 ~ 25294615 (+)
trhr2 trhr2,LOC107686265,LOC107738778,LOC107549620,LOC107740321,LOC107583797,LOC107672195 coding upstream 183961 25176932 ~ 25187744 (+)
chtf8 chtf8,LOC107569647,LOC107583916 coding upstream 246916 25123321 ~ 25124789 (+)
herpud1 herpud1,LOC107686272,LOC107549637,LOC107740310,LOC107672290 coding downstream 565 25381708 ~ 25387860 (+)
LOC122362468 cetp coding downstream 7891 25389034 ~ 25394241 (+)
nlrc5 nlrc5,LOC107580006 coding downstream 13739 25394882 ~ 25413257 (+)
cpne2 cpne2,LOC107583787,LOC107740309,LOC107672324 coding downstream 36720 25417863 ~ 25436773 (+)
rspry1 rspry1,LOC107583786,LOC107672266 coding downstream 64446 25445589 ~ 25457287 (+)
G129262 NA non-coding upstream 22667 25348756 ~ 25349038 (+)
G129246 NA non-coding upstream 83168 25288143 ~ 25288537 (+)
G129135 NA non-coding upstream 229846 25063454 ~ 25141859 (+)
LOC122362644 NA non-coding upstream 322100 25034118 ~ 25049605 (+)
G129270 fam192a non-coding downstream 58905 25440048 ~ 25442441 (+)
G129360 NA non-coding downstream 281354 25662497 ~ 25663585 (+)
G129368 NA non-coding downstream 293928 25675071 ~ 25675310 (+)
G129370 NA non-coding downstream 295414 25676557 ~ 25676861 (+)
G129435 NA non-coding downstream 585873 25967016 ~ 26221023 (+)
mt2 NA other upstream 23111 25346392 ~ 25348594 (+)
kiaa0513 zgc:91860,LOC107583795,LOC107740318,LOC107686269,LOC107738753,LOC107549630 other upstream 61965 25294743 ~ 25309740 (+)
LOC122323037 NA other upstream 783368 24583845 ~ 24588337 (+)
G128858 NA other upstream 914145 24449765 ~ 24457560 (+)
cdh13 cdh13,LOC107722459,LOC107684661,LOC107587012,LOC107738387,LOC107666219,LOC107553949 other upstream 1634857 23457100 ~ 23736848 (+)
G129424 LOC107738763,LOC107549607,LOC107686336,LOC107742881,LOC107583870 other downstream 540124 25921267 ~ 26174156 (+)
slc24a1 LOC107596980,LOC107738725,LOC107686291,LOC107672236,LOC107742879,LOC107583763 other downstream 571187 25952330 ~ 25962581 (+)
G129454 frmd4a,si:ch211-220f12.1,LOC107719967,LOC107599825 other downstream 847951 26229094 ~ 26332010 (+)
G129468 cpt1b,LOC107710383,LOC107686536,LOC107599889,LOC107671150 other downstream 922744 26303887 ~ 26306806 (+)

Expression


Co-expression Network