LOC122323116 (v2ra18,LOC107568268,LOC107716837,LOC107695208,LOC107568349,LOC107568277,LOC107695207,LOC107695201)


Basic Information

Item Value
gene id LOC122323116
gene name v2ra18,LOC107568268,LOC107716837,LOC107695208,LOC107568349,LOC107568277,LOC107695207,LOC107695201
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 5653706 ~ 5659654 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216776.1
ATGATGCTACTCTGTATCGCCAGGTTTTGTAATGTTGTATGCAGAGTTAATTTAGGCACCTGCATCCTCCAAGCTGACCCGCAGCCCCCTGCACTTTTCAAGGATGGAGATTTTGTCATTGGAGGGGCTTTCACCATTCATTATTATCTGAAGACAGAGAAGCATATCTACATTAGTCGGCCACGACCACTTGAGTGCAGTGGCAGCATGGACTTCAGAGAGTTGCGCTTTGCTCGCGCCTTGCAATTCGCCATCCAAGAGATCAACAACAGCTCCGATCTTTTACCAGGCATCACTTTAGGGTACCATATATACGACTCGTGTGGCTCTGTGCCAATGGCGATTAAAGTAGCATTACAGCTTGCCAACGGACTAGATCTCGTATTTAACGACACTGATTCCTGTGTAAAATCTGCTGCAGTTCCCGCACTTGTTGGAGAATCTGGTTCCACACCGTCTATAAGCATGTCAAGATTTTTTGGTCTCTTTGGAATTCCACAGGTGAGTCATTACGCGACGTGCGCGTGTCTCAGTGACAAGCGGCAGCATCCTACTTTCTTCAGGACCATCCCCAGCGACCACCATCAAGCGGCAGCACTGGCACGGATGGTCAAGCACTTCGGATGGACGTGGATCGGGGCTGTGCGCAGTGATTCAGACTATGGGAACAATGGCATGGCATCATTTCTGAAAGCTGCTGAGGAGGAAGGGATCTGTGTGGAGTATTCTGAGGCCTACTACAGGACCCAGCCGCGCAGCAAACTGAAAAGAGTGGCGGATGTCATTCGCAGATCAACGGCTCGTGTGATAGTTGCATTCCTGGCTTCAGGTGATATGAGACTTCTGTTAGAAGAGTTGAGCCAGCAGCCTCCTCCTCCGATGCAGTGGATTGGCAGCGAAGCGTGGGTTACCGATCCAGAAATGCTGCGTTTTAATTTGTGTATCGGTGTAGTGGGTTTTGCAATCCCGCGGTCTGTTATCCCGGGTCTTCGTCAATTTCTACTCGACCTGTCTCCAGAACAAGCGCTAAAATTCCCCCTGCTGACAGAATTCTGGGAAAGCTCATTCAGCTGTAGTCTAAAACAGCACACAGGTTCTTCTACTGATATGCCAGCATGTGATGGGACAGAAAACCTGCGCGCTTTACAGAACCCGTATACAGACACGTCCCAGTTGCGCGTCACAAATATGGTGTACAAAGCGACATATGCTATAGCTCATGCCCTCCATGCCATTGTCTGTAAGGAAAATAGATGTGACAAAAGCATCAAAGTTGATCCCCATAAGGTTTTTGATCAACTTAAACAGGTGAActtcactaaaaataattatccTGTTTCATTTGACTCCAATGGAGATGCTGTGGCCGCATATGAACTTGTGAACTGGCAGCTTCATGGAGAAGGTTCAGTTGATTTTGTGACAGTGGGTCAATATGATGCATCCAAGCCTAAAGGCCAAGAATTCAGTCTGAGCAGAGCTATCATTTGGTATGACGGCAGTGAAAAGGtgcctgtgtctgtgtgcagtgAGAGCTGTCCTCCAGGTACAAGGAAGGCTGCACAGAAAGGAAGACCTGTCTGTTGTTATGACTGTATTAACTGTGCAGAAGGAGAGATCAGCAATGAGACAGATTCTTTAAATTGTTACAGATGCCATCCTGAGTATTGGCCCAATGATGAGAAGGACAAGTGTCTTCCTAAACCAGTGGAGTTTCTCTCCTGGGATGAGATCCTTGGGATTATACTGGCTGCTTTCTCTGTTGCTGGCTCTTTAGTGGCTTTGAGCATAACTTTAGTGTTCTACAAAAACAGGGCCTCTCCGATAGTAAAAGCCAACAACTCAGAGCTGAGCTTCCTGCTTCTCTTCTCATTGTCTCTGTGTTTCCTTTGTTCTCTTACTTTCATTGGTCGACCCACTGAGTGGTCCTGTATGTTGCGCCACACAGCATTTGGGATAAtttttgttctctgtatctCCTGTGTTCTCGGGAAAACTATAGTGGTGTTAATGGCCTTCAAAGCTACACTTCCAGGAAATAAtgtcatgaaatggtttgggcCTCCTCAACAGAGACTCAGTGTTTTGGGCTTCACTCTTGTACAGGTACTTATATGTGTGCTTTGGTTAACAATATCTCCACCTTTTCCTTATAACAATATGCAACACTACAAAGAAAAGATCATTCTAGAATGCAGTTTAGGATCAGCTGTAGGTTTCTGGGCTGTTCTGGGTTATATTGGCCTCCTGGCAttcctttgctttgttttagcTTTTCTTGCCCGAAAGTTGCCTGATAACTTCAATGAAGCTAAGTTCATCACATTCAGTATGCTCATATTCTGTGCTGTATGGATCACTTTTATTCCAGCTTATGTCAGCTCTCCAGGGAAATTTACTGTAGCTGTGGagatttttgctattttagcttcaagcTTTGGTCTGATTCTCTGCATTTTTGCTCCTAagtgtttcattattttatttaggccAGAACAGAATACCAAAAAACACTTAATGGGTAAAGTACCATCAAAAGCCCTCTGAGTCCTTAAACAAAAGCACTGCAAAGGTGCGCACAGTAATTAACAGTggacattatatattttgtgaatttgaagcatattatacacacacacacacacacatatatatatgtatattccaAAGTTGCCATATTTCTCACAGTGAGTGTCATGGCATGACCAAAtacactatatttttaaaaataatactcaTTTGTGTCACAGAATGTAGTTTTATGAGTTTCTTTTAGGCAGGAATGTACTTGGTTAGACCTCAAATATGCAGTttgttaataaatactgtataacgTCTATTTGAAAATTTGGTTTCacgttttttaatgttacaggGCATCGGTGGGCATTCAGTGCTCATACACCGACCCATCGGCCTGATCTTCTGGAATAGTGGTTAAATCTAACAGGTTTTTGGTCTTTTATTTGTTCCAGAGCAAATGGTTTTGGCAGATAGCAGAAACTCTTCACGTTATAACTGTAACTTCAATGCAGTATATAAGATGGCTGTCTTTTGTACTTTTGACCGAATTGCCTAGGAACATTTATGATAGCTGTTGTCATTGTTCATTACAtcttattgtttaataaataatattttatataaataataatgttactgGTTGAGGAATGGTGTGCATTTGTAGATATACATCAATTAGTAGTCCATTAATATCCATAAAAAACTGCCACGCAGGTTGAAACAATGCGAGAATGTGCTACCACAACTGGCAAGAGCAGCTCCGTGGTGTTTAGCGTCCCGCCACCAGCAGATGCACGCTAAAGAAGCAAAGCTTCAGCAAAAGCAATTATTATGAATTTGTCTGAGAAAACGGTAGAGAGAGATTcgatttatttactaaaaaaataggTTTTCTGAGTCTGCATCACTGAAGTTGCCGATCCTGTCTCATGCCTTCAGGGAAAAGTGCATCTTTAcagattatgattatgattattttgtTAAGTAGTAATTTAAAGCTTTCTATAGATATTTGGCAGAATGCGCATGATgttagttttctttattttataaaagtgcaCCGTTTTGCTGATATTATGAGCGCACGCAAATAAAAGTATACCCTTTACGGTTCCGAACGATGTATCTCTCTTAAATGGTGTTACTAACAGCGATATTTTTCCAGCAACGAGTAATCCTCGCCATTAAAACGCCATTACTTTTCTCACAATAAAATGCAGCCTTACTGTAATCTATTATAGGTTCAGTTCATCTTAATAGATGTGCAGTGTGACGTACCTATATTTGACATACCAAAACTCTAATGTGCCATCGATGCTTTGATTCACACacgcaataaaaaaagatgcagaGCTAGAGAGTCCTGCATAAAACGCAGAATGTAAACAATATTCTTTGCTGTATTTTCCAGTCAAAAAAGCGTTCCTTTGGAATTCTTCAGAAATAGGCcttttatttacatagaaaaagtcTTAGATCTTAGTTCAGCTCATGTAAAACGTGTTGCATTTAGAATTTCGGTCAGTGTATATAttgcaaattatgtttttaattctgtttgCATGTACGTCAACTTGGATATCTGGTCAATAAAAGGCTTTTAATGATGTAAACATGGTCAATCCATTGTTAGTTGTGGTTggacacaaaaataaaatacaaatattttataatttaatttggtAAACAGTACTAGTGGCTCCTATATATTTACAAACTACGTAACAATCATAATCCAACAGTATGATGAAc

Function

NR:

description
PREDICTED: extracellular calcium-sensing receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216776.1 True 4275 mRNA 0.41 6 5653706 5659654

Neighbor

gene id symbol gene type direction distance location
LOC122363140 v2ra18,LOC107716837,LOC107695208,LOC107568277,LOC107568268,LOC107695207,LOC107568349,LOC107695201 coding upstream 8651 5641407 ~ 5645055 (+)
LOC122363134 v2ra16,LOC107716837,LOC107695208,LOC107568277,LOC107568268,LOC107568349,LOC107695207,LOC107695201 coding upstream 15433 5634794 ~ 5638273 (+)
LOC122323190 v2ra17,LOC107695208,LOC107716837,LOC107568277,LOC107695207,LOC107568349,LOC107568268 coding upstream 23905 5625938 ~ 5629801 (+)
LOC122323189 v2ra18,LOC107568349,LOC107695201,LOC107695208,LOC107716837,LOC107568268,LOC107568277,LOC107695207 coding upstream 42798 5607481 ~ 5610908 (+)
LOC122323191 v2rx3,LOC107730035,LOC107695206,LOC108434083,LOC108263925 coding upstream 48709 5601441 ~ 5604997 (+)
LOC122323115 v2rh13,LOC107703370,LOC107714341,LOC107568275,LOC107713513,LOC107568276,LOC107703378,LOC107557170 coding downstream 971 5660625 ~ 5674945 (+)
LOC122363148 v2rh32,LOC107713513,LOC107703378,LOC107568276,LOC107714341,LOC107703370,LOC107568275 coding downstream 16229 5675883 ~ 5679114 (+)
LOC122363168 v2rh1,v2rh11,v2rh12,LOC107703386,LOC107568278,LOC107712093,LOC107557170 coding downstream 26016 5685670 ~ 5688983 (+)
LOC122362590 LOC107707880,LOC107557166,LOC107671069,LOC107557170,LOC107748085,LOC107748086,LOC107557168,LOC107741383 coding downstream 41614 5701268 ~ 5705591 (+)
LOC122322885 v2rh1,LOC107557170,LOC107703386,LOC107748085,LOC107568278,LOC107712093,LOC107569154,LOC107676314,LOC107569152,LOC107697635 coding downstream 52840 5712494 ~ 5716263 (+)
G124595 NA non-coding upstream 298726 5354713 ~ 5354980 (+)
G124544 NA non-coding upstream 470169 5011405 ~ 5183537 (+)
G124547 NA non-coding upstream 595868 5056750 ~ 5057838 (+)
G124533 NA non-coding upstream 745537 4903768 ~ 4908169 (+)
G124506 NA non-coding upstream 897087 4756230 ~ 4756619 (+)
G124622 v2rx1,LOC107703364,LOC107568274,LOC107716020 non-coding downstream 252 5659906 ~ 5660233 (+)
G124672 NA non-coding downstream 361587 6021241 ~ 6021636 (+)
G124673 NA non-coding downstream 364005 6023659 ~ 6023991 (+)
G124703 NA non-coding downstream 567827 6227481 ~ 6230584 (+)
LOC122362614 NA non-coding downstream 630868 6290522 ~ 6290901 (+)
G124612 v2ra17,LOC107568349,LOC107568268,LOC107703349,LOC107695207,LOC107722082,LOC105904790,LOC107695201 other upstream 24053 5623453 ~ 5629653 (+)
LOC122323196 v2ra17,v2ra16,LOC107695207,LOC107568277,LOC107716837,LOC107695208,LOC107568268,LOC107568349 other upstream 28729 5619470 ~ 5624977 (+)
LOC122363125 LOC107702192,LOC107742943,LOC107564270,LOC107557162,LOC107702193,LOC107742944,LOC107748627,LOC107671076,LOC107748628,LOC107564269,LOC107702194,LOC107671077,LOC107557163 other upstream 157913 5492237 ~ 5495793 (+)
G124598 NA other upstream 258394 5394895 ~ 5395312 (+)
G124580 NA other upstream 423760 5228563 ~ 5229946 (+)
G124661 NA other downstream 316556 5976210 ~ 5979282 (+)
LOC122362599 LOC107557170,LOC107748085,LOC107741383,LOC107569151,LOC107741381,LOC107697634,LOC107697635,LOC107568278,LOC107712093,LOC107671063,LOC107569152 other downstream 360895 6020549 ~ 6029121 (+)
G124707 NA other downstream 631837 6291491 ~ 6291925 (+)
G124727 LOC107750410,LOC107695433,LOC107548924,LOC107739781,LOC107739761,LOC107564274,LOC107702188,LOC107728083,LOC107739792 other downstream 879593 6539247 ~ 6540907 (+)
G124881 LOC102215562 other downstream 1366664 7026318 ~ 7027135 (+)

Expression


Co-expression Network