si:ch1073-390k14.1 (LOC107600154,LOC107662899,LOC107736082)


Basic Information

Item Value
gene id si:ch1073-390k14.1
gene name LOC107600154,LOC107662899,LOC107736082
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 20101629 ~ 20118432 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216823.1
GGGACGTGCCTGCTTGGAAGCCTGGCACGGTCACGAAGGAGACGGCGAAACGCAGGATGGCGAAGCCTGCTGGAAGCGAAATTACGAGGTCTTGGCGAAGAGATCTGCGCTTTTCTGAAACAACAAGAGGATAAAAGGCTGGGGTTCGGCCGCTGCCCTGCGGACGCCGCACTCACTGTCAAACAGTGACCTCCAGAGGACAGACGGAGAACTGCAGCCCGCGCCGGTTAACTGGAGTCGACTCTTCTGCTGCTGCAAACTCATTATTTGAGGCATAGGCGTTAAACTAATGCCCTGTGACTTGAATTTGCTGGCTGAGAGAATGTCTACATGCAGAGATGTGAAGTCTGAGGTCCGTGAACTGCTGAAAGAGCTGATGTCGGGTCGCGAGGATCCGGATgggtttttctgtgtgtgtttgtcactgCTGGGGGACACCGACACCCGAACACACTTTCTGGACCTAATCAAACCTCTTTTAAGCGGACATGAACTCCTGCACAGTCAGCTGATTGCAACCTTCCTAGAGTACTTCTCTAAGGATGAAGCAGATGGATTAGAGTTGGCCTTAACACTCTCTGTTAATGAAACCGAACAAATCAAACCAGATCATCAGCCTCATGTGCCTCCCTGTTATAAAAGCTGCGCCGGCATGACTGCTGTAACTTCAGGTTTTGATCAGCCAAACCTCAATGCAGCAGAGAGCCAGGCTGCTGCGAAAAGGACGCTAGATAATGAAGTACATAAAACCGCATGCgccattaaaaacacaaatgaagacaatGACGATCTCAAGGTCACGAAGTCAACGAGGTCACAAAGACGTCGGCAGCGGAAGAAGCAGCATTTGTTGAAGAACCCATCGGGACCGCGACCGGTTCTGCTCTGGTTCAGAAGGGACCTCCGTATGTGGGACAAccctgctctgattggctccttTGAGCTTGGTGCGCCTGTCATTCCCGTCTTCCTGTGGAACGCGGCGGAGGAGGAGGGTCCAGGGGTCACTGTGGCCGCCGGCGGGGCGTCCAAATACTGGCTGCATCAGGCACTAGTGGGTCTGAGTCGCTCTCTGGAGCAGCGTGGAAGCCACTTGGTCACCTTGAAGGCAGAGGCCTCGTCTTTGACAGCGCTGCAAGGGTTGATCGCTGAGACGGGGGCAGGGTCGGTCGTGGCAACGGCCCTGTATGAGCCATGGCTGAAGGAAAGAGATGAGCGTGTGTGGGAAGCGCTGGAGAAACAAGGTGTCAAGTGCCGTGTCTATCACTCTTACTGCCTCAGAGACCCCTACACAGTCAGCACTCGGGGCGTTGGGCTGCGAGGCATCGGCTCTGTCTCTCACTTCATGAACTGTTGCCAGCAGAACCCCGGCAGTAGACTGACCGCCCCGCTGGACGCTCCCGTTGTCCTGCCTGCTCCCTCGACATGGCCGAAGGGATGCCCGCTTGCTGACCTGGGACTGGCACGCATGCCACGCAGGAAAGATGGCACAGAgATTGATTGGGCCGTGAACATTCGGAAATCGTGGGACTTCAGTGAGGAAGGAGCTCGTGCCCGTCTCGAGGCCTTCCTGCGAGATGGTGTGTACCATTATGAGAAGGAGTCGAGTCGTGCGGATGAGCCCAACACCAGCTCTCTATCTCCATATCTGCACTTTGGGCAGCTAAGTGCACGCAGCTTATTGTGGGACGCCCGTGGAGCTCGCTGCAGACCTCCCAAGTTCCAACGCAAACTGGCCTGGAGGGACCTGGCATACTGGCAGCTGTGCCTTTTCCCAGACCTTCCCTGGGAGTCCCTCAGGCCACCGTACAAGTCCCTGCGTTGGAGCTCAGACCCTGTCCATCTGAAGGCATGGCAGCGTGGAAGGACAGGATACCCGCTGGTAGATGCTGCCATGAGACAGCTGTGGCAGACTGGCTGGATGAACAATTACATGAGACACGTGGTGGCCTCCTTCCTCATCGCTTATCTACATATTCCCTGGCAGGAAGGATACCGCTGGTTTCAAGACACTCTGGTAGATGCTGATGTTGCTATAGATGCCATGATGTGGCAGAATGGAGGAATGTGTGGACTGGATCACTGGAACTTCGTGATGCACCCTGTTGATGCAGCGCTGACCTGTGACCCCTATGGCACTTTTGTGCGACAGTGGTGTCCTGAACTGAAAGCGCTTCCTAATGACCTCATCCATAAGCCCTGGAAGTGCCCAGCATCGATGTTGCGTAGAGCAGGTGTGGTTTTAGGCAGCAGCTACCCAGAACGGATCATTACTGACCTCGAGGAGCAACGTGCACAGTCTCTAAAGGATGTTGCATCTGTGAGAAGGCGTTTTAAGGAGTTTGTAGACCAGCGATCAGGCTGTGACATGGTACCTGTTCCTCCAAGGCTGGTGCAGGAAGCTCTGGGTAATTTGGAGGATGTTGTGAGTCACAAAGGAACCGGCTTTCTCCTCCCAGTCATCACCCGCATGGAGTTTAAACACCACTCAGAGGACCCAGGTAACCAAGATAACCCGTACAGCTCTGTGCTGAAGGGCTACATCAGCCGCAAACGGGACGAAACCATTGCCTTCCTAAACGAGCGAGACTTCACAGCCAGTGTGATTTTTGAGAGCGCACAGCGTAGAGAGAGGGTAGAGAAGGACCGGTGTCTTCTGGAGGGTCTGCCGAAACCCACAGACTTGTTCGGCCGGGCCAGACGTAAACCAACCAGAGACCCTTACAGCAAAGTGCCTGGAGGTGTCACTGTTCCCCACAGATAACAGGCTGACTCGTCCaagctggaatacactacacaGTTTTGCAGATTTATAACCAATTTGCAGGATGAGCCAACTCCGGTCAGTCAGTCTGCACATTTTCGGCTGTCAGAGTCGATTTCACCCATATTCATGTGGTGTGTTATTGGGACAGACTCAGATTTTTTAGCTTCAGACTTTGATCCAGTCTGAGGAAATCAAACGTATTTGACATTTTGAGACCTTAAACAACCCACTAGCAGCGTCTGAAACCACATACTAGTCTATAGGTAATACAGTTGGTTTGAAATTTACCACACAAGCTCTAAAAAAAGCATGTCGTATGTATAATATGGGGGGTATGAATCCACTaggttgttattgttttcatcttTAGATAGACTGTTATCATTgcttatgtgtttatataatgtatcaTTACTTATATAAGTTATCAGACTTTTTTAGCTGGGAGGTATGACAGTCGGAAATCTTATTCTTTTATTACATCTAGAGATCAGAATAACAGGATATTATTTTGACCTTTAAGCAGCTGTATTGCAAAGCAAGTACGGTCAGCTTTTCACGTCGACTAAAAAAAACGCAGCATGAGCAagttttttctctttgtacAAACACATCCATCATAGTGTtagaaatgtaacttttttca
>XM_043216824.1
CGCCCCTCTAAAGTCACCGGAGACGCTGTTACGTACTCATCATGCCTCTTTTACTAAAGTTTATGTAGTTAATGTACGTAATAAATTCATCATTACATTCATCATTTCGTGAATTTGCTGGCTGAGAGAATGTCTACATGCAGAGATGTGAAGTCTGAGGTCCGTGAACTGCTGAAAGAGCTGATGTCGGGTCGCGAGGATCCGGATgggtttttctgtgtgtgtttgtcactgCTGGGGGACACCGACACCCGAACACACTTTCTGGACCTAATCAAACCTCTTTTAAGCGGACATGAACTCCTGCACAGTCAGCTGATTGCAACCTTCCTAGAGTACTTCTCTAAGGATGAAGCAGATGGATTAGAGTTGGCCTTAACACTCTCTGTTAATGAAACCGAACAAATCAAACCAGATCATCAGCCTCATGTGCCTCCCTGTTATAAAAGCTGCGCCGGCATGACTGCTGTAACTTCAGGTTTTGATCAGCCAAACCTCAATGCAGCAGAGAGCCAGGCTGCTGCGAAAAGGACGCTAGATAATGAAGTACATAAAACCGCATGCgccattaaaaacacaaatgaagacaatGACGATCTCAAGGTCACGAAGTCAACGAGGTCACAAAGACGTCGGCAGCGGAAGAAGCAGCATTTGTTGAAGAACCCATCGGGACCGCGACCGGTTCTGCTCTGGTTCAGAAGGGACCTCCGTATGTGGGACAAccctgctctgattggctccttTGAGCTTGGTGCGCCTGTCATTCCCGTCTTCCTGTGGAACGCGGCGGAGGAGGAGGGTCCAGGGGTCACTGTGGCCGCCGGCGGGGCGTCCAAATACTGGCTGCATCAGGCACTAGTGGGTCTGAGTCGCTCTCTGGAGCAGCGTGGAAGCCACTTGGTCACCTTGAAGGCAGAGGCCTCGTCTTTGACAGCGCTGCAAGGGTTGATCGCTGAGACGGGGGCAGGGTCGGTCGTGGCAACGGCCCTGTATGAGCCATGGCTGAAGGAAAGAGATGAGCGTGTGTGGGAAGCGCTGGAGAAACAAGGTGTCAAGTGCCGTGTCTATCACTCTTACTGCCTCAGAGACCCCTACACAGTCAGCACTCGGGGCGTTGGGCTGCGAGGCATCGGCTCTGTCTCTCACTTCATGAACTGTTGCCAGCAGAACCCCGGCAGTAGACTGACCGCCCCGCTGGACGCTCCCGTTGTCCTGCCTGCTCCCTCGACATGGCCGAAGGGATGCCCGCTTGCTGACCTGGGACTGGCACGCATGCCACGCAGGAAAGATGGCACAGAgATTGATTGGGCCGTGAACATTCGGAAATCGTGGGACTTCAGTGAGGAAGGAGCTCGTGCCCGTCTCGAGGCCTTCCTGCGAGATGGTGTGTACCATTATGAGAAGGAGTCGAGTCGTGCGGATGAGCCCAACACCAGCTCTCTATCTCCATATCTGCACTTTGGGCAGCTAAGTGCACGCAGCTTATTGTGGGACGCCCGTGGAGCTCGCTGCAGACCTCCCAAGTTCCAACGCAAACTGGCCTGGAGGGACCTGGCATACTGGCAGCTGTGCCTTTTCCCAGACCTTCCCTGGGAGTCCCTCAGGCCACCGTACAAGTCCCTGCGTTGGAGCTCAGACCCTGTCCATCTGAAGGCATGGCAGCGTGGAAGGACAGGATACCCGCTGGTAGATGCTGCCATGAGACAGCTGTGGCAGACTGGCTGGATGAACAATTACATGAGACACGTGGTGGCCTCCTTCCTCATCGCTTATCTACATATTCCCTGGCAGGAAGGATACCGCTGGTTTCAAGACACTCTGGTAGATGCTGATGTTGCTATAGATGCCATGATGTGGCAGAATGGAGGAATGTGTGGACTGGATCACTGGAACTTCGTGATGCACCCTGTTGATGCAGCGCTGACCTGTGACCCCTATGGCACTTTTGTGCGACAGTGGTGTCCTGAACTGAAAGCGCTTCCTAATGACCTCATCCATAAGCCCTGGAAGTGCCCAGCATCGATGTTGCGTAGAGCAGGTGTGGTTTTAGGCAGCAGCTACCCAGAACGGATCATTACTGACCTCGAGGAGCAACGTGCACAGTCTCTAAAGGATGTTGCATCTGTGAGAAGGCGTTTTAAGGAGTTTGTAGACCAGCGATCAGGCTGTGACATGGTACCTGTTCCTCCAAGGCTGGTGCAGGAAGCTCTGGGTAATTTGGAGGATGTTGTGAGTCACAAAGGAACCGGCTTTCTCCTCCCAGTCATCACCCGCATGGAGTTTAAACACCACTCAGAGGACCCAGGTAACCAAGATAACCCGTACAGCTCTGTGCTGAAGGGCTACATCAGCCGCAAACGGGACGAAACCATTGCCTTCCTAAACGAGCGAGACTTCACAGCCAGTGTGATTTTTGAGAGCGCACAGCGTAGAGAGAGGGTAGAGAAGGACCGGTGTCTTCTGGAGGGTCTGCCGAAACCCACAGACTTGTTCGGCCGGGCCAGACGTAAACCAACCAGAGACCCTTACAGCAAAGTGCCTGGAGGTGTCACTGTTCCCCACAGATAACAGGCTGACTCGTCCaagctggaatacactacacaGTTTTGCAGATTTATAACCAATTTGCAGGATGAGCCAACTCCGGTCAGTCAGTCTGCACATTTTCGGCTGTCAGAGTCGATTTCACCCATATTCATGTGGTGTGTTATTGGGACAGACTCAGATTTTTTAGCTTCAGACTTTGATCCAGTCTGAGGAAATCAAACGTATTTGACATTTTGAGACCTTAAACAACCCACTAGCAGCGTCTGAAACCACATACTAGTCTATAGGTAATACAGTTGGTTTGAAATTTACCACACAAGCTCTAAAAAAAGCATGTCGTATGTATAATATGGGGGGTATGAATCCACTaggttgttattgttttcatcttTAGATAGACTGTTATCATTgcttatgtgtttatataatgtatcaTTACTTATATAAGTTATCAGACTTTTTTAGCTGGGAGGTATGACAGTCGGAAATCTTATTCTTTTATTACATCTAGAGATCAGAATAACAGGATATTATTTTGACCTTTAAGCAGCTGTATTGCAAAGCAAGTACGGTCAGCTTTTCACGTCGACTAAAAAAAACGCAGCATGAGCAagttttttctctttgtacAAACACATCCATCATAGTGTtagaaatgtaacttttttca

Function

NR:

description
PREDICTED: deoxyribodipyrimidine photo-lyase-like

GO: NA

KEGG:

id description
K12119 CRY2; cryptochrome 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216823.1 True 3413 mRNA 0.51 10 20101629 20118432
XM_043216824.1 False 3220 mRNA 0.50 9 20111238 20118432

Neighbor

gene id symbol gene type direction distance location
glg1b glg1,LOC107686575,LOC107705797,LOC107573092,LOC107662902,LOC105906547 coding upstream 46322 20017374 ~ 20055307 (+)
cog8 cog8,LOC107686577,LOC107573089,LOC107735343,LOC107600188 coding upstream 101886 19994589 ~ 19999743 (+)
zdhhc7 zdhhc7,LOC107573093,LOC107705792,LOC107736389,LOC107686620,LOC107601043,LOC107662857,LOC108435925 coding upstream 112815 19981461 ~ 19988814 (+)
LOC122323149 LOC107561063,LOC107705779,LOC107686622,LOC107561062 coding upstream 147430 19945146 ~ 19954199 (+)
LOC122362767 LOC107561062 coding upstream 160816 19938028 ~ 19940813 (+)
otogl otogl,LOC107736094,LOC107686601,LOC107662850 coding downstream 3224 20121656 ~ 20154452 (+)
LOC122362491 LOC107736106 coding downstream 37034 20155466 ~ 20160178 (+)
ptprq ptprq,LOC107705767,LOC107662847,LOC107564908,LOC107564907,LOC108413201,LOC107683214 coding downstream 41689 20160121 ~ 20197815 (+)
wash1 wash1,LOC107564895,LOC107686618,LOC107662897 coding downstream 111722 20230154 ~ 20238801 (+)
fkbp4 fkbp4,LOC107686573,LOC107705800,LOC107564896,LOC107662895,LOC107735478 coding downstream 131970 20250402 ~ 20256447 (+)
G127663 NA non-coding upstream 109993 19985741 ~ 19991636 (+)
G127637 golim4,LOC107662907 non-coding upstream 176827 19781765 ~ 19924802 (+)
G127632 NA non-coding upstream 475108 19626153 ~ 19626521 (+)
G127630 NA non-coding upstream 478347 19623013 ~ 19623282 (+)
G127617 NA non-coding upstream 525470 19575889 ~ 19576159 (+)
G127766 iqsec3b,LOC107564909,LOC107705799,LOC107735425,LOC107662846,LOC108413205 non-coding downstream 84316 20202748 ~ 20215231 (+)
LOC122363139 NA non-coding downstream 102872 20221304 ~ 20224584 (+)
G127780 NA non-coding downstream 138280 20256712 ~ 20281295 (+)
G127785 NA non-coding downstream 206898 20325330 ~ 20383758 (+)
G127800 NA non-coding downstream 255422 20373854 ~ 20375835 (+)
zfhx3a si:ch73-386h18.1,LOC107705798,LOC107686574,LOC107564894,LOC107735402,LOC107662901,LOC107600168 other upstream 8028 20067678 ~ 20093601 (+)
wdr59 wdr59,LOC107686576,LOC107662905 other upstream 85923 20003004 ~ 20015706 (+)
LOC122323181 LOC107600247,LOC107735268,LOC107660675 other upstream 813073 19269611 ~ 19288556 (+)
G127500 NA other upstream 1260094 18730690 ~ 18841535 (+)
LOC122323076 p2ry2.1,LOC107594365,LOC107658870 other upstream 1449465 18646362 ~ 18652164 (+)
glipr1b glipr1b,LOC107733273,LOC107560107,LOC107662866,LOC107601008,LOC107736196 other downstream 427560 20545992 ~ 20549357 (+)
si:dkey-30c15.17 LOC107686550,LOC107559644,LOC107733274 other downstream 432716 20551148 ~ 20556627 (+)
terb1 LOC107710377,LOC107686590,LOC107559931,LOC107662840,LOC107600507,LOC107736230 other downstream 471252 20589684 ~ 20600519 (+)
LOC122362661 zgc:77650,arf5,LOC107599973,LOC107559620,LOC108439765,LOC108439842,LOC107599983,LOC103033491 other downstream 516413 20634845 ~ 20641059 (+)
LOC122363143 LOC107722468,LOC107587027,LOC107670369,LOC107684651,LOC107738409,LOC107559800,LOC107705337,LOC107658950,LOC107584024,LOC107656390,LOC107718551,LOC107590534 other downstream 2282512 22400944 ~ 22411957 (+)

Expression


Co-expression Network