LOC122323232 (cyba,LOC107550118,LOC107661987,LOC107571231,LOC107715044,LOC107698019,LOC100705310)


Basic Information

Item Value
gene id LOC122323232
gene name cyba,LOC107550118,LOC107661987,LOC107571231,LOC107715044,LOC107698019,LOC100705310
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 6868863 ~ 6871482 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043216931.1
GGTTTGTGACACGCTGGCCACTTCCCACTTCTCTTGTTTAGAATCAGCCTAAGTTCAAACTAAAGTTTACTTATCAGCGATAGCACGTACTCAAGTGAACATGGGCAAAATCGAGTGGGCGATGTGGGCAAATGAGCAAGCCCTGGCTGCTGGACTCATTTATGCGACTGGTGGGGTTGTTGGGGTGGCCGGTCAGTTCAGAGGCTGGCAGTTTGCAGCTTTCGGCATTGCTgccggtgtgtttgtgtgtttgcttgaATATCCGCGGAGCAAAAGGGGCAAAGGCACCAGCGTTGAGAGGACTGGTCAGTACTGCTTCACAGTTTGTGTAAAAGCTTTTGGACCCCTGACCAGAAACTATTATGTCAGAGCATTTTTGCACGCTGCGCTGTGTGTTCCTGGAGGTTTCATGTTAGCCACAGTTCTGGGATGTGTGTGTCTAGGAATTGCCAGTTTGATCTATCTTTCAGCAGCTATTCATGGAGAGCATTGGGAGCCCATACTGCCACGTACAGAGCCGCCAAAGCGTGTTGGGGAGAGCATCAAAGAACCTCCTCAAAACCCTCCACCTCGTCCTCCTCCTGAACTCCGCCGGAAGAAAGCAGATAAACTAGAGACTGCTGTGTATGACAATCCCATGTCTGTGACCGTCAATGAATAAGGATTCTATTGTGGAAACAGTAACCTATTATTTAAGGAGGTTTCAGTGACAAGTATCTGTTTTGAGTTTATACCTGTATATCTGTTTTGAGTCTAACAAAACTgcaagacagagagagagagagagccagcaCTAACttttatcatgtttattttataatatctttGGTGTATTACTCTTGACCGATTTGAAACATcccatttattattgttactaaTAGAAGAGCAATTTTTATGTAagagattttagtttttatcataaatataatcaaagaagaaaaaacaaaatttacTGGAATGATGTTTAAGTGTTAACAGTGATTGTGTATATTTACCtcaagagagtgtgtgtgtatatagttaTGTCTTAATATGTGTTTACAATAAACTCAGGATGTGCTTTATTCAA

Function

symbol description
cyba Predicted to enable heme binding activity; metal ion binding activity; and oxidoreductase activity. Acts upstream of or within macrophage chemotaxis and neutrophil migration. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of NADPH oxidase complex. Human ortholog(s) of this gene implicated in artery disease (multiple); asthma; chronic obstructive pulmonary disease; and phagocyte bactericidal dysfunction (multiple). Orthologous to human CYBA (cytochrome b-245 alpha chain).

NR:

description
PREDICTED: cytochrome b-245 light chain-like

GO:

id name namespace
GO:0020037 heme binding molecular_function

KEGG:

id description
K08009 CYBA, P22PHOX; cytochrome b-245, alpha polypeptide

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043216931.1 True 1069 mRNA 0.42 6 6868863 6871482

Neighbor

gene id symbol gene type direction distance location
pdcd5 pdcd5,LOC107550119,LOC107690755,LOC107571235 coding upstream 24536 6841363 ~ 6844327 (+)
uraha urah,LOC107550123,LOC107670260,LOC107740931 coding upstream 34300 6831770 ~ 6834563 (+)
cd151l cd151,cd151l,LOC107670266,LOC105891114,LOC106561929,LOC106587086,LOC103368535 coding upstream 39241 6817569 ~ 6829622 (+)
LOC122362675 LOC107710267,LOC107704474 coding upstream 64179 6801428 ~ 6804684 (+)
dhx36 dhx36 coding upstream 109087 6737075 ~ 6759776 (+)
tcf25 tcf25 coding downstream 1318 6872800 ~ 6910075 (+)
mc1r mc1r,tubb3,LOC107662306,LOC107706122,LOC103037812 coding downstream 64474 6935956 ~ 6938158 (+)
def8 def8,LOC107742104,LOC107755590 coding downstream 89633 6961115 ~ 7019049 (+)
LOC122362721 lamb1 coding downstream 217336 7088818 ~ 7090566 (+)
LOC122362727 NA coding downstream 974518 7846000 ~ 7848851 (+)
G124799 NA non-coding upstream 31941 6836700 ~ 6836922 (+)
G124795 NA non-coding upstream 54228 6814324 ~ 6814635 (+)
G124793 NA non-coding upstream 63175 6805483 ~ 6805688 (+)
G124783 NA non-coding upstream 102397 6760783 ~ 6766466 (+)
LOC122362680 NA non-coding upstream 110405 6757704 ~ 6758458 (+)
G124866 NA non-coding downstream 56142 6927624 ~ 6927950 (+)
G124867 NA non-coding downstream 56845 6928327 ~ 6928540 (+)
G124877 NA non-coding downstream 69277 6940759 ~ 6941102 (+)
G124902 NA non-coding downstream 162961 7034443 ~ 7034667 (+)
G124904 NA non-coding downstream 183910 7055392 ~ 7055773 (+)
G124727 LOC107750410,LOC107695433,LOC107548924,LOC107739781,LOC107739761,LOC107564274,LOC107702188,LOC107728083,LOC107739792 other upstream 327956 6539247 ~ 6540907 (+)
G124707 NA other upstream 576938 6291491 ~ 6291925 (+)
LOC122362599 LOC107557170,LOC107748085,LOC107741383,LOC107569151,LOC107741381,LOC107697634,LOC107697635,LOC107568278,LOC107712093,LOC107671063,LOC107569152 other upstream 839742 6020549 ~ 6029121 (+)
G124661 NA other upstream 889581 5976210 ~ 5979282 (+)
G124612 v2ra17,LOC107568349,LOC107568268,LOC107703349,LOC107695207,LOC107722082,LOC105904790,LOC107695201 other upstream 1239210 5623453 ~ 5629653 (+)
G124881 LOC102215562 other downstream 154836 7026318 ~ 7027135 (+)
G124914 NA other downstream 301144 7172626 ~ 7173020 (+)
G124920 NA other downstream 306357 7177839 ~ 7178276 (+)
gins2 gins2,psf2 other downstream 1124090 7995572 ~ 8007882 (+)
si:ch73-103b9.2 LOC107675000,LOC107667976,LOC107719884,LOC107711755,LOC107567296,LOC101883751 other downstream 1297383 8168865 ~ 8532072 (+)

Expression


Co-expression Network