barx2 (barx2,LOC107670639,LOC107692488,LOC102779973)


Basic Information

Item Value
gene id barx2
gene name barx2,LOC107670639,LOC107692488,LOC102779973
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056716.1
NCBI id CM032085.1
chromosome length 26409628
location 14130499 ~ 14147187 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043263900.1
AGCAGCGCGGCAGTGACAGGATAGTTGGTTTATATAGCGGTGACTCAGAGCGCGCCGCGCACTCCCCGCGTGAATGAGCGCGCCGAAGACACCGAGCACACCAGATCAGACGAGATGTCGATTTAGATCACCGCCTTGCCTTAAAACCCGCACACTGCTCCGAAAGAAGGCGATCGGCGAACCATGCACTGTCAGGCAGAGCTGAGGGTCGCGAGCAGCGCGCAGCTGAAAGCCGCCAGGAGACGATACAAGACTTTCATGATCGACGAGATCCTCTCCAAGGAGACTTGTGATTACTTCGAGAAGCTTTCTCTTTACTCGGTTTGCCCCTCTTTAATCGTCAGACCCAAACCTCTGCATTCATGCTCGGGCTCTGCTCCTCTGAGGTCGTATCCTCTGCTGTCGGTGATCACGCACCAGCCTCCCAGCAGCCTCCAGCAGCTCTCCCAGCCGTCTCCTCACCTGCCTCTTCTGTCACCCCAGCACCCTCTGAGCTCAGAGCCCACGGCCAGCGAGACGCCCGTCAGCATCAGCAGCGAGTCCGAGACGGAGCACAGCGCCCCTCGGCTGAAGAAACCCCGCCGCAGCCGCACCATCTTCACCGAGCTGCAGCTGCTGGGCCTGGAGAAGAAGTTCCAGAAACAGAAATATCTGTCCACTCCGGACAGATTGGACCTGGCCCAGTCTTTGGGACTCACGCAGCTCCAGGTGAAGACATGGTACCAGAACAGACGCATGAAATGGAAGAAAATGGTGCTAAAAGGAGGACATGAGGCTCCTACCAAGCCCAAAGGCAGACCTAAGAAGAACTCCATCCCAACCACAGAGGAGATCGAGGCCCAGGAACGGCTGGCGGCCAAACTAGAGGAGGAGAAGCTACGAGGCGATGGGGAAGACGAGGTCTTCCAATCTCAACCTCAAGATCTCAGTACGTCCGCTACATCTGAATCCGTCTGTCCAGAATCCCCGGCGCAAGAACAGGCCCCTCCGTCTCCATCGGAAGCGATGACGACCAGCTAAACGCACAACCAAAGACAGCTACTGAAAGACTTTGACGCTCTCTGGACTTGAGCAGATGAACGGCTTCCCAAGCCTGATTGTTTTGAGTTGACGGTGATCCCCAAAAGTGTACTTCAGACACGCAAAAATGTGTGAATGTCATTGCAAAACATCATGCGTAACAAGAAAAGATAGAATAAGCACACTTCTCGatcaaacatttcattaaaataagctttttttaggTATTAAACGATAAAACAACAGGACAATGTATTTGGACACATTCTGGATGTCAGACTGTGGATCATATTCATAACTATCGAATAAAAATGCGTTTTAAAAGCGTTCCCATAAAGTTATGAAAACCTTATTTCTGAATGTTCTCTGAACGTTCAAACGtgtagttttttatgttttaaaaacatctgtcCTTGGTTGTTTGAATGTTAAGGGAACATTCCATTTGATCATTTAGCAAACATTGTGGCAATGTTACGTTTAGAAAAAagcagtgacatttaaaaaaaaaaaatgttagagaAACGTACATCTAAAACGTTTCAGAAAACGAACAATTTTTGTGATAACATTTCGAGAGCAttattaaaggtatagttcacccaaaaatgaaaattctgtcacaaCTAAATCCTTTTCATGTGCTTCCCTTTTCTCCTGCtcaccaaataaatatatatatatatatatatattttaaagaatgttaatAACAATGTTAATAATAGAGTTGTTGGTTCCatagtattatttttctttcatactATGGAAGGTTTCAGGAAGTGTTTGgttacccacattcttcaaaagatgttttagttttcatacacttaataagaaaaaatctcaggtgacagcattttcaaaaagcagtgaacattttatgttttggcCTCACACCATGGCAGAATGTCGGGCCTGAAAACATTTGGAAATGGGTTTCAAACTGTAACCAACCgtgtaaccaaaaaaaaaaaagtaaatttttggAAACAATGACGTTACGAGTTTTACAGATTCGCACGAGCAAGGatctttttaacaatattttcacTTTCAACTTTCGTACATCATTATCGTGCAAACGTACCTTTATACAGGTCTGGAGtaggttttagtttttttgggtgaattatccttCCAAAGACTAGATAACTTTGAACGAATGCTCTATGAATGTTACTGTTGTGAACATTGTGAACGTTCCCCGTGGACTATCcactaaaaatgaaattgagGCCATTTGCAGATTTTATGTAATGCAATGACATGCAGGCATTTTATAGTATGCAAGTGTCCAGTTACTTTCCACTATATATGGCTATGCCGTGATCTACATTGCTTTACATGTTTGTGTCACACAGCTGCCTcgctgaaatgtattttataaaaaattgaAAGCCATTAACATGCTGCCAGATACACCAACGTATAAAACCGAATCACAAAGACTGACTTTCTTGCACCAGTGCGGCACGTCCTATACGGACAAACagcaagtgtttatttttttctgggtTTGTTCCTCTCTTTCCCTGTAAATATTACCTGTGTAATTGCTCCTGTAGTTTACGGTGCACCTGTGTACTGTAGCATGGGATTCTGTGCCAAAACACATATATCTGAGAAGCTAAAGTGCCCTTTGaggttttttctttctttttttttacgcatCCATGAAGCTGCTGCCATTAAAAGTTAATAGGACGGGTTAGTATGAATACCAGTGTAAACATGTACAGAGTTCTGGATTTCGCATGAGAAAATGTTGCTCTTTTTAAAGCAGGATTGTCCAGTTTGGGTAAAGATTAGCTTTATCCATTCAACATGTCAATGGATAAAGAATCTGTCAGCTTAGTGTAGAAAAAGAACATAAATCgagaaaacattaaaagtagTATTGATTTAAGTAAACCTTCCAAAGTGCCCTCTCTCTGCCAAACGACAATGTGTTTTCTCTACCTGTTTGCAGAgaaaaatagtttcttttgtCCGTTTTATGCGTGGCATGCTTCGACTTTGCTGTATTTCAACCGAATCCTTTCTTCGAATCACCTTTGTGCGTGCGTGTAACCTTTGCGCGGCCGCTTAGCACTATCCTCCGAGGCCGAAAACACGCGGTACACGAACTCCCACGGATCGCGCTAGCTATTGTGTGTCTCGTCCCATTTCGTTCgctttgaatgaaaaaaaaaaacgttgaacCCTTTTCCCCCCGCCGTGGAGTGGCGCAGTGTGACACCACTAAGTGCAGGCTGGTTTTATTACTGTAAGAAAAACCACTTAATCTGTCAGGGACGCAAagcaattaataaatcaaactcGCGCTAGTAAAACCTGCAAAAAAACACGAAAATCCGCGGGACATGTCGAAGCCCGCGGGAGCTCTGCACATGCCTACAGCTGACTGACGGCCCACAAATACATCATCGCAGACTCCTCCATCCTGCATGTCATGAGCTCCGTTTCCAACCGTTGTTGCCTTTTGCgaagattttatttgtatagttgttgtttttttcttctgtgtttggCCAACAgcaaatattgaaaatatattccTTCTttgatatacacacaaaaaaaacactatttttctGGTGTACATACTGAATTTTATTGGGTGAGTAgttattttgtattcttttgttttggaaaagactatatagatagatatttgaCAAGAACCCCTTTTTCACCCAAACGTtctgtaatttttattgtatgtgtgtgtgtttgcatatttaataacatttaataaagatatCAGTAATTTTG

Function

symbol description
barx2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in epithelium; immature eye; pectoral fin; pectoral fin bud; and pharyngeal arch. Orthologous to human BARX2 (BARX homeobox 2).

NR:

description
PREDICTED: homeobox protein BarH-like 2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09361 BARX; BarH-like homeobox

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043263900.1 True 3797 mRNA 0.42 4 14130499 14147187

Neighbor

gene id symbol gene type direction distance location
rbm7 rbm7,LOC107755678,LOC107739154 coding upstream 3655 14123396 ~ 14126844 (+)
LOC122323172 LOC107560134,LOC107692493,LOC107733301,LOC107670597,LOC107717611,LOC107602107 coding upstream 257234 13870029 ~ 13873265 (+)
sertad3 sertad3,LOC107670600,LOC107717619 coding upstream 533285 13594302 ~ 13597214 (+)
blvrb blvrb,LOC107692505 coding upstream 536350 13591816 ~ 13594149 (+)
mmp23bb mmp23bb,LOC107758054,LOC107670598,LOC107672246,LOC107717605,LOC107576217,LOC108440601 coding upstream 605193 13519067 ~ 13525306 (+)
smtla LOC107709547,LOC107590731,LOC107692520,LOC107656966 coding downstream 430983 14578170 ~ 14583254 (+)
fli1 fli1,LOC107692484,LOC107656981 coding downstream 556973 14704160 ~ 14727887 (+)
kcnj5 kcnj5,LOC107725067,LOC107558569,LOC107709561 coding downstream 604995 14752182 ~ 14775393 (+)
bmp16 LOC107566293,LOC107692530,LOC107709563,LOC107577119,LOC107725066 coding downstream 696024 14843211 ~ 14850376 (+)
ppp1r37 ppp1r37,LOC107692481,LOC107566290,LOC107709550 coding downstream 724581 14871768 ~ 14901407 (+)
G126251 NA non-coding upstream 9649 14120193 ~ 14120850 (+)
G126243 NA non-coding upstream 61628 14068604 ~ 14068871 (+)
G126192 NA non-coding upstream 181135 13948152 ~ 13949364 (+)
G126188 NA non-coding upstream 201442 13928284 ~ 13929057 (+)
G126186 NA non-coding upstream 204639 13925629 ~ 13925860 (+)
G126262 NA non-coding downstream 228378 14375565 ~ 14442503 (+)
G126285 NA non-coding downstream 323573 14470760 ~ 14471015 (+)
LOC122323060 NA non-coding downstream 593599 14740786 ~ 14743444 (+)
G126347 NA non-coding downstream 785134 14932321 ~ 14984748 (+)
G126345 ltbp4,LOC107724163,LOC107566282,LOC107692515 non-coding downstream 789738 14936925 ~ 14937634 (+)
G126146 gramd1bb other upstream 189130 13940095 ~ 13941369 (+)
G126175 NA other upstream 217699 13909564 ~ 13912800 (+)
lbhl lbhl other upstream 261167 13861871 ~ 13869332 (+)
daw1 daw1,LOC107727686,LOC107576612,LOC107717604 other upstream 424385 13670289 ~ 13706114 (+)
gemin7 NA other downstream 679601 14826788 ~ 14828292 (+)
LOC122322993 LOC107709552 other downstream 759429 14906616 ~ 14910157 (+)
LOC122362588 NA other downstream 888196 15035383 ~ 15047893 (+)
LOC122362954 LOC107740354 other downstream 1803795 15950982 ~ 15953653 (+)
LOC122362745 si:ch211-71n6.4,si:dkey-30c15.17,LOC107686550,LOC107559644,LOC107753016,LOC107758068,LOC107670624,LOC107672404,LOC107733274 other downstream 1899882 16047069 ~ 16055627 (+)

Expression


Co-expression Network